GPN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C8' | C7' | sing | 1.51Å | 1.54Å | |
C8' | N9 | sing | 1.46Å | 1.49Å | |
C8' | H8'1 | sing | 1.09Å | 1.10Å | |
C8' | H8'2 | sing | 1.09Å | 1.10Å | |
C7' | O7' | doub | 1.21Å | 1.23Å | |
C7' | N4' | sing | 1.35Å | 1.36Å | |
C5' | C | sing | 1.51Å | 1.54Å | |
C5' | N4' | sing | 1.46Å | 1.48Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
N4' | C3' | sing | 1.47Å | 1.48Å | |
C3' | C2' | sing | 1.53Å | 1.54Å | |
C3' | H3'1 | sing | 1.09Å | 1.10Å | |
C3' | H3'2 | sing | 1.09Å | 1.10Å | |
C2' | N | sing | 1.47Å | 1.47Å | |
C2' | H2'1 | sing | 1.09Å | 1.10Å | |
C2' | H2'2 | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
N | H3 | sing | 1.01Å | 1.00Å | |
N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.45Å | |
C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.23Å | |
C6 | N1 | sing | 1.35Å | 1.40Å | |
N1 | C2 | sing | 1.36Å | 1.39Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.33Å | |
C2 | N3 | doub | 1.31Å | 1.35Å | |
N2 | HN21 | sing | 0.97Å | 1.00Å | |
N2 | HN22 | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.37Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C7' | C8' | N9 | 115.4° | 109.4° |
C7' | C8' | H8'1 | 107.6° | 109.5° |
C7' | C8' | H8'2 | 107.6° | 109.5° |
C8' | C7' | O7' | 117.2° | 120.0° |
C8' | C7' | N4' | 121.3° | 120.0° |
N9 | C8' | H8'1 | 107.5° | 109.5° |
N9 | C8' | H8'2 | 107.6° | 109.5° |
C8' | N9 | C8 | 126.5° | 126.2° |
C8' | N9 | C4 | 128.7° | 126.3° |
H8'1 | C8' | H8'2 | 111.3° | 109.5° |
O7' | C7' | N4' | 121.5° | 120.0° |
C7' | N4' | C5' | 120.4° | 120.0° |
C7' | N4' | C3' | 124.5° | 120.0° |
C | C5' | N4' | 113.6° | 109.5° |
C | C5' | H5'1 | 108.1° | 109.5° |
C | C5' | H5'2 | 108.1° | 109.5° |
C5' | C | O | 120.3° | 120.0° |
C5' | C | OXT | 117.2° | 120.0° |
N4' | C5' | H5'1 | 108.1° | 109.5° |
N4' | C5' | H5'2 | 108.1° | 109.5° |
C5' | N4' | C3' | 115.1° | 120.0° |
H5'1 | C5' | H5'2 | 110.8° | 109.4° |
O | C | OXT | 122.5° | 120.0° |
C | OXT | HXT | 109.5° | 117.0° |
N4' | C3' | C2' | 112.9° | 109.5° |
N4' | C3' | H3'1 | 108.3° | 109.5° |
N4' | C3' | H3'2 | 108.3° | 109.4° |
C2' | C3' | H3'1 | 108.3° | 109.5° |
C2' | C3' | H3'2 | 108.3° | 109.5° |
C3' | C2' | N | 112.2° | 109.4° |
C3' | C2' | H2'1 | 108.6° | 109.5° |
C3' | C2' | H2'2 | 108.6° | 109.4° |
H3'1 | C3' | H3'2 | 110.6° | 109.4° |
N | C2' | H2'1 | 108.6° | 109.5° |
N | C2' | H2'2 | 108.6° | 109.5° |
C2' | N | H | 109.5° | 109.4° |
C2' | N | H2 | 109.4° | 109.5° |
C2' | N | H3 | 109.5° | 109.5° |
H2'1 | C2' | H2'2 | 110.3° | 109.5° |
H | N | H2 | 109.5° | 109.5° |
H | N | H3 | 109.5° | 109.5° |
H2 | N | H3 | 109.5° | 109.5° |
C8 | N9 | C4 | 104.7° | 107.4° |
N9 | C8 | N7 | 114.8° | 109.8° |
N9 | C8 | H8 | 122.6° | 125.1° |
N9 | C4 | C5 | 106.5° | 106.2° |
N9 | C4 | N3 | 127.6° | 134.1° |
N7 | C8 | H8 | 122.6° | 125.1° |
C8 | N7 | C5 | 104.0° | 109.3° |
N7 | C5 | C6 | 130.4° | 134.1° |
N7 | C5 | C4 | 110.0° | 107.2° |
C6 | C5 | C4 | 119.6° | 118.6° |
C5 | C6 | O6 | 128.7° | 120.9° |
C5 | C6 | N1 | 113.1° | 118.3° |
C5 | C4 | N3 | 125.9° | 119.7° |
O6 | C6 | N1 | 118.2° | 120.8° |
C6 | N1 | C2 | 123.3° | 120.3° |
C6 | N1 | HN1 | 118.4° | 119.8° |
C2 | N1 | HN1 | 118.3° | 119.8° |
N1 | C2 | N2 | 116.5° | 119.0° |
N1 | C2 | N3 | 123.7° | 121.9° |
N2 | C2 | N3 | 119.8° | 119.1° |
C2 | N2 | HN21 | 120.0° | 120.0° |
C2 | N2 | HN22 | 120.0° | 119.9° |
C2 | N3 | C4 | 114.1° | 121.1° |
HN21 | N2 | HN22 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C7' | C8' | N9 | H8'1 | 120.0° | 120.0° |
C7' | C8' | N9 | H8'2 | 120.0° | 120.0° |
C7' | C8' | H8'1 | H8'2 | 117.6° | 120.0° |
C8' | C7' | O7' | N4' | 178.1° | 180.0° |
C8' | C7' | N4' | C5' | 173.0° | 180.0° |
C8' | C7' | N4' | C3' | 8.2° | 0.0° |
C7' | C8' | N9 | C8 | 144.9° | 95.0° |
C7' | C8' | N9 | C4 | 39.3° | 84.7° |
N9 | C8' | H8'1 | H8'2 | 117.6° | 120.0° |
N9 | C8' | C7' | O7' | 69.9° | 0.0° |
N9 | C8' | C7' | N4' | 112.0° | 180.0° |
C8' | N9 | C8 | C4 | 176.6° | 179.7° |
C8' | N9 | C8 | N7 | 176.8° | 180.0° |
C8' | N9 | C8 | H8 | 3.2° | 0.0° |
C8' | N9 | C4 | C5 | 177.4° | 179.9° |
C8' | N9 | C4 | N3 | 2.8° | 0.7° |
H8'1 | C8' | C7' | O7' | 170.1° | 120.0° |
H8'1 | C8' | C7' | N4' | 8.0° | 60.0° |
H8'1 | C8' | N9 | C8 | 95.1° | 145.1° |
H8'1 | C8' | N9 | C4 | 80.8° | 35.3° |
H8'2 | C8' | C7' | O7' | 50.1° | 120.0° |
H8'2 | C8' | C7' | N4' | 127.9° | 60.0° |
H8'2 | C8' | N9 | C8 | 24.9° | 25.0° |
H8'2 | C8' | N9 | C4 | 159.3° | 155.3° |
O7' | C7' | N4' | C5' | 5.0° | 0.0° |
O7' | C7' | N4' | C3' | 173.8° | 180.0° |
C7' | N4' | C5' | C | 109.0° | 90.0° |
C7' | N4' | C5' | C3' | 178.9° | 180.0° |
C7' | N4' | C5' | H5'1 | 131.0° | 30.0° |
C7' | N4' | C5' | H5'2 | 11.0° | 150.0° |
C7' | N4' | C3' | C2' | 102.3° | 90.0° |
C7' | N4' | C3' | H3'1 | 17.7° | 150.0° |
C7' | N4' | C3' | H3'2 | 137.7° | 30.0° |
C | C5' | N4' | H5'1 | 120.0° | 120.0° |
C | C5' | N4' | H5'2 | 120.0° | 120.0° |
C | C5' | H5'1 | H5'2 | 118.3° | 120.0° |
C5' | C | O | OXT | 179.6° | 180.0° |
C5' | C | OXT | HXT | 179.6° | 180.0° |
C | C5' | N4' | C3' | 69.9° | 90.0° |
N4' | C5' | H5'1 | H5'2 | 118.3° | 120.0° |
N4' | C5' | C | O | 87.8° | 0.0° |
N4' | C5' | C | OXT | 92.5° | 180.0° |
C5' | N4' | C3' | C2' | 78.9° | 90.0° |
C5' | N4' | C3' | H3'1 | 161.2° | 30.0° |
C5' | N4' | C3' | H3'2 | 41.1° | 150.0° |
H5'1 | C5' | C | O | 32.2° | 120.0° |
H5'1 | C5' | C | OXT | 147.5° | 60.0° |
H5'1 | C5' | N4' | C3' | 50.1° | 150.0° |
H5'2 | C5' | C | O | 152.2° | 120.0° |
H5'2 | C5' | C | OXT | 27.5° | 59.9° |
H5'2 | C5' | N4' | C3' | 170.1° | 30.0° |
O | C | OXT | HXT | 0.0° | 0.0° |
N4' | C3' | C2' | H3'1 | 120.0° | 120.0° |
N4' | C3' | C2' | H3'2 | 120.0° | 120.0° |
N4' | C3' | H3'1 | H3'2 | 118.6° | 119.9° |
N4' | C3' | C2' | N | 62.8° | 180.0° |
N4' | C3' | C2' | H2'1 | 177.2° | 60.0° |
N4' | C3' | C2' | H2'2 | 57.2° | 60.0° |
C2' | C3' | H3'1 | H3'2 | 118.6° | 120.0° |
C3' | C2' | N | H2'1 | 120.0° | 120.0° |
C3' | C2' | N | H2'2 | 120.0° | 119.9° |
C3' | C2' | H2'1 | H2'2 | 118.9° | 120.0° |
C3' | C2' | N | H | 180.0° | 180.0° |
C3' | C2' | N | H2 | 60.0° | 60.0° |
C3' | C2' | N | H3 | 60.0° | 60.1° |
H3'1 | C3' | C2' | N | 57.2° | 59.9° |
H3'1 | C3' | C2' | H2'1 | 62.8° | 179.9° |
H3'1 | C3' | C2' | H2'2 | 177.2° | 60.0° |
H3'2 | C3' | C2' | N | 177.2° | 60.1° |
H3'2 | C3' | C2' | H2'1 | 57.2° | 60.0° |
H3'2 | C3' | C2' | H2'2 | 62.8° | 180.0° |
N | C2' | H2'1 | H2'2 | 118.9° | 120.0° |
C2' | N | H | H2 | 120.0° | 120.0° |
C2' | N | H | H3 | 120.0° | 120.0° |
C2' | N | H2 | H3 | 120.0° | 120.0° |
H2'1 | C2' | N | H | 60.0° | 60.0° |
H2'1 | C2' | N | H2 | 180.0° | 180.0° |
H2'1 | C2' | N | H3 | 60.0° | 60.0° |
H2'2 | C2' | N | H | 60.0° | 60.1° |
H2'2 | C2' | N | H2 | 60.0° | 59.9° |
H2'2 | C2' | N | H3 | 180.0° | 180.0° |
H | N | H2 | H3 | 120.0° | 120.0° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.7° | 0.0° |
C8 | N9 | C4 | C5 | 0.9° | 0.4° |
C8 | N9 | C4 | N3 | 179.3° | 179.5° |
C4 | N9 | C8 | N7 | 0.1° | 0.3° |
C4 | N9 | C8 | H8 | 179.8° | 179.7° |
N9 | C4 | C5 | N7 | 1.4° | 0.4° |
N9 | C4 | C5 | C6 | 179.0° | 179.8° |
N9 | C4 | C5 | N3 | 179.8° | 179.3° |
N9 | C4 | N3 | C2 | 177.0° | 179.6° |
C8 | N7 | C5 | C6 | 179.2° | 180.0° |
C8 | N7 | C5 | C4 | 1.3° | 0.2° |
H8 | C8 | N7 | C5 | 179.3° | 180.0° |
N7 | C5 | C6 | C4 | 179.5° | 179.8° |
N7 | C5 | C6 | O6 | 2.0° | 0.0° |
N7 | C5 | C6 | N1 | 177.5° | 180.0° |
N7 | C5 | C4 | N3 | 178.8° | 179.7° |
C5 | C6 | O6 | N1 | 179.6° | 179.9° |
C5 | C6 | N1 | C2 | 4.8° | 0.0° |
C5 | C6 | N1 | HN1 | 175.2° | 180.0° |
C6 | C5 | C4 | N3 | 0.8° | 0.5° |
C4 | C5 | C6 | O6 | 177.5° | 179.7° |
C4 | C5 | C6 | N1 | 2.9° | 0.2° |
C5 | C4 | N3 | C2 | 2.7° | 0.5° |
O6 | C6 | N1 | C2 | 175.5° | 179.9° |
O6 | C6 | N1 | HN1 | 4.4° | 0.0° |
C6 | N1 | C2 | HN1 | 180.0° | 180.0° |
C6 | N1 | C2 | N2 | 177.1° | 180.0° |
C6 | N1 | C2 | N3 | 3.2° | 0.0° |
N1 | C2 | N2 | N3 | 179.8° | 180.0° |
N1 | C2 | N2 | HN21 | 179.8° | 0.0° |
N1 | C2 | N2 | HN22 | 0.3° | 180.0° |
N1 | C2 | N3 | C4 | 0.8° | 0.3° |
HN1 | N1 | C2 | N2 | 2.9° | 0.0° |
HN1 | N1 | C2 | N3 | 176.9° | 180.0° |
C2 | N2 | HN21 | HN22 | 179.9° | 179.9° |
N2 | C2 | N3 | C4 | 179.0° | 179.7° |
N3 | C2 | N2 | HN21 | 0.0° | 180.0° |
N3 | C2 | N2 | HN22 | 180.0° | 0.0° |