GPM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.60Å
C1	C7	sing	1.53Å	1.57Å
C1	O5	sing	1.43Å	1.48Å
C1	H1	sing	1.09Å	1.10Å
C2	C3	sing	1.53Å	1.56Å
C2	O2	sing	1.43Å	1.44Å
C2	H2	sing	1.09Å	1.10Å
C3	C4	sing	1.53Å	1.54Å
C3	O3	sing	1.43Å	1.42Å
C3	H3	sing	1.09Å	1.10Å
C4	C5	sing	1.53Å	1.56Å
C4	O4	sing	1.43Å	1.42Å
C4	H4	sing	1.09Å	1.10Å
C5	C6	sing	1.53Å	1.51Å
C5	O5	sing	1.43Å	1.46Å
C5	H5	sing	1.09Å	1.10Å
C6	O6	sing	1.43Å	1.44Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
C7	P	sing	1.82Å	1.79Å
C7	H71	sing	1.09Å	1.10Å
C7	H72	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6	HO6	sing	0.97Å	0.95Å
P	O1P	doub	1.48Å	1.52Å
P	O2P	sing	1.61Å	1.52Å
P	O3P	sing	1.61Å	1.53Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C7	122.9°	109.5°
C2	C1	O5	107.2°	109.4°
C2	C1	H1	107.4°	109.5°
C1	C2	C3	106.8°	109.2°
C1	C2	O2	118.0°	109.6°
C1	C2	H2	107.1°	109.5°
C7	C1	O5	102.1°	109.5°
C7	C1	H1	107.7°	109.4°
C1	C7	P	127.5°	109.5°
C1	C7	H71	104.8°	109.5°
C1	C7	H72	104.8°	109.5°
O5	C1	H1	108.9°	109.5°
C1	O5	C5	115.7°	114.1°
C3	C2	O2	108.1°	109.5°
C3	C2	H2	107.5°	109.5°
C2	C3	C4	107.6°	109.0°
C2	C3	O3	109.1°	109.6°
C2	C3	H3	108.8°	109.6°
O2	C2	H2	109.0°	109.5°
C2	O2	HO2	109.5°	114.1°
C4	C3	O3	111.2°	109.5°
C4	C3	H3	109.2°	109.5°
C3	C4	C5	111.6°	109.1°
C3	C4	O4	111.7°	109.5°
C3	C4	H4	108.1°	109.5°
O3	C3	H3	110.9°	109.6°
C3	O3	HO3	109.5°	114.0°
C5	C4	O4	108.1°	109.5°
C5	C4	H4	107.7°	109.6°
C4	C5	C6	116.1°	109.5°
C4	C5	O5	108.5°	109.4°
C4	C5	H5	107.3°	109.5°
O4	C4	H4	109.5°	109.6°
C4	O4	HO4	109.5°	113.9°
C6	C5	O5	108.2°	109.5°
C6	C5	H5	108.0°	109.5°
C5	C6	O6	109.1°	109.5°
C5	C6	H61	109.6°	109.5°
C5	C6	H62	109.6°	109.5°
O5	C5	H5	108.6°	109.5°
O6	C6	H61	109.6°	109.5°
O6	C6	H62	109.6°	109.5°
C6	O6	HO6	109.5°	114.0°
H61	C6	H62	109.5°	109.5°
P	C7	H71	104.8°	109.5°
P	C7	H72	104.8°	109.5°
C7	P	O1P	108.7°	109.5°
C7	P	O2P	102.7°	109.5°
C7	P	O3P	103.7°	109.5°
H71	C7	H72	109.4°	109.5°
O1P	P	O2P	115.3°	109.5°
O1P	P	O3P	108.7°	109.5°
O2P	P	O3P	116.7°	109.4°
P	O2P	HOP2	109.5°	114.0°
P	O3P	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C7	O5	120.0°	120.0°
C2	C1	C7	H1	125.5°	120.0°
C2	C1	O5	H1	116.0°	120.0°
C1	C2	C3	O2	127.9°	119.9°
C1	C2	C3	H2	114.6°	120.0°
C1	C2	O2	H2	122.3°	120.2°
C1	C2	C3	C4	62.0°	57.0°
C1	C2	C3	O3	177.2°	176.8°
C1	C2	C3	H3	56.2°	62.9°
C2	C1	O5	C5	61.9°	61.2°
C2	C1	C7	P	59.6°	175.0°
C2	C1	C7	H71	62.8°	55.0°
C2	C1	C7	H72	178.0°	65.0°
C1	C2	O2	HO2	180.0°	179.9°
C7	C1	O5	H1	113.7°	120.0°
C7	C1	C2	C3	55.8°	62.4°
C7	C1	C2	O2	66.0°	57.5°
C7	C1	C2	H2	170.7°	177.7°
C7	C1	O5	C5	68.4°	58.8°
C1	C7	P	H71	122.4°	120.0°
C1	C7	P	H72	122.4°	120.0°
C1	C7	H71	H72	111.9°	120.0°
C1	C7	P	O1P	175.6°	55.0°
C1	C7	P	O2P	53.0°	65.0°
C1	C7	P	O3P	68.9°	175.0°
O5	C1	C2	C3	61.7°	57.6°
O5	C1	C2	O2	176.5°	177.5°
O5	C1	C2	H2	53.2°	62.3°
C1	O5	C5	C4	57.4°	61.2°
C1	O5	C5	C6	175.9°	178.9°
C1	O5	C5	H5	58.9°	58.8°
O5	C1	C7	P	179.6°	65.1°
O5	C1	C7	H71	57.2°	175.0°
O5	C1	C7	H72	58.0°	55.0°
H1	C1	C2	C3	178.6°	177.6°
H1	C1	C2	O2	59.6°	62.5°
H1	C1	C2	H2	63.7°	57.7°
H1	C1	O5	C5	177.9°	178.8°
H1	C1	C7	P	65.9°	54.9°
H1	C1	C7	H71	171.7°	65.0°
H1	C1	C7	H72	56.5°	175.0°
C3	C2	O2	H2	116.5°	120.1°
C2	C3	C4	O3	119.4°	119.9°
C2	C3	C4	H3	117.9°	119.9°
C2	C3	O3	H3	119.8°	120.3°
C2	C3	C4	C5	59.7°	57.0°
C2	C3	C4	O4	179.1°	176.8°
C2	C3	C4	H4	58.6°	62.9°
C3	C2	O2	HO2	58.9°	60.4°
C2	C3	O3	HO3	180.0°	180.0°
O2	C2	C3	C4	170.1°	176.9°
O2	C2	C3	O3	49.4°	63.2°
O2	C2	C3	H3	71.7°	57.0°
H2	C2	C3	C4	52.6°	63.0°
H2	C2	C3	O3	68.2°	56.9°
H2	C2	C3	H3	170.8°	177.2°
H2	C2	O2	HO2	57.6°	59.8°
C4	C3	O3	H3	121.7°	120.2°
C3	C4	C5	O4	123.2°	119.9°
C3	C4	C5	H4	118.5°	119.9°
C3	C4	O4	H4	119.7°	120.1°
C3	C4	C5	C6	177.0°	177.6°
C3	C4	C5	O5	55.0°	57.6°
C3	C4	C5	H5	62.2°	62.3°
C4	C3	O3	HO3	61.5°	60.4°
C3	C4	O4	HO4	180.0°	180.0°
O3	C3	C4	C5	179.1°	176.9°
O3	C3	C4	O4	59.7°	63.3°
O3	C3	C4	H4	60.8°	57.0°
H3	C3	C4	C5	58.2°	62.9°
H3	C3	C4	O4	63.0°	57.0°
H3	C3	C4	H4	176.5°	177.2°
H3	C3	O3	HO3	60.2°	59.8°
C5	C4	O4	H4	117.1°	120.2°
C4	C5	C6	O5	122.1°	119.9°
C4	C5	C6	H5	120.5°	120.1°
C4	C5	O5	H5	116.3°	120.0°
C4	C5	C6	O6	58.0°	175.0°
C4	C5	C6	H61	178.0°	55.1°
C4	C5	C6	H62	61.9°	64.9°
C5	C4	O4	HO4	56.8°	60.4°
O4	C4	C5	C6	59.8°	62.6°
O4	C4	C5	O5	178.2°	177.5°
O4	C4	C5	H5	61.1°	57.5°
H4	C4	C5	C6	58.5°	57.7°
H4	C4	C5	O5	63.5°	62.2°
H4	C4	C5	H5	179.3°	177.8°
H4	C4	O4	HO4	60.3°	59.8°
C6	C5	O5	H5	117.0°	120.1°
C5	C6	O6	H61	119.9°	120.0°
C5	C6	O6	H62	119.9°	120.0°
C5	C6	H61	H62	120.2°	120.0°
C5	C6	O6	HO6	180.0°	180.0°
O5	C5	C6	O6	64.1°	65.1°
O5	C5	C6	H61	55.9°	174.9°
O5	C5	C6	H62	176.0°	54.9°
H5	C5	C6	O6	178.5°	54.9°
H5	C5	C6	H61	61.5°	65.0°
H5	C5	C6	H62	58.6°	175.0°
O6	C6	H61	H62	120.2°	120.0°
H61	C6	O6	HO6	60.1°	60.0°
H62	C6	O6	HO6	60.1°	60.0°
P	C7	H71	H72	112.0°	120.0°
C7	P	O1P	O2P	114.7°	120.0°
C7	P	O1P	O3P	112.2°	120.0°
C7	P	O2P	O3P	112.6°	120.0°
C7	P	O2P	HOP2	118.1°	60.0°
C7	P	O3P	HOP3	115.6°	179.9°
H71	C7	P	O1P	62.0°	175.0°
H71	C7	P	O2P	175.4°	55.0°
H71	C7	P	O3P	53.5°	65.0°
H72	C7	P	O1P	53.2°	65.0°
H72	C7	P	O2P	69.4°	175.0°
H72	C7	P	O3P	168.7°	55.0°
O1P	P	O2P	O3P	129.3°	120.0°
O1P	P	O2P	HOP2	0.0°	180.0°
O1P	P	O3P	HOP3	0.0°	59.9°
O2P	P	O3P	HOP3	132.4°	60.1°
O3P	P	O2P	HOP2	129.3°	60.0°

Definition date:	1999-07-08
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	5GPB