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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Pdoub1.51Å1.51Å
PO2Psing1.63Å1.48Å
PO5'sing1.63Å1.62Å
PNZsing1.66Å1.63Å
O2PHOP2sing0.98Å0.95Å
O5'C5'sing1.42Å1.45Å
C5'C4'sing1.52Å1.51Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.45Å1.44Å
C4'C3'sing1.52Å1.47Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.41Å
C3'C2'sing1.52Å1.48Å
C3'H3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.41Å1.43Å
C2'C1'sing1.52Å1.52Å
C2'H2'sing1.10Å1.12Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.45Å
C1'H1'sing1.10Å1.12Å
N9C8sing1.38Å1.35ÅAromatic
N9C4sing1.37Å1.35ÅAromatic
C8N7doub1.32Å1.30ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.41ÅAromatic
C5C6sing1.44Å1.43Å
C5C4doub1.37Å1.35ÅAromatic
C6O6doub1.22Å1.22Å
C6N1sing1.40Å1.41Å
N1C2sing1.42Å1.39Å
N1HN1sing1.02Å1.02Å
C2N2sing1.37Å1.35Å
C2N3doub1.32Å1.34Å
N2HN21sing0.99Å1.02Å
N2HN22sing0.99Å1.02Å
N3C4sing1.35Å1.37Å
NCAsing1.44Å1.45Å
NHsing1.01Å1.02Å
NH2sing1.01Å1.02Å
CACBsing1.53Å1.53Å
CACsing1.52Å1.53Å
CAHAsing1.09Å1.12Å
CBCGsing1.53Å1.52Å
CBHB2sing1.10Å1.11Å
CBHB3sing1.10Å1.12Å
CGCDsing1.53Å1.52Å
CGHG2sing1.10Å1.12Å
CGHG3sing1.10Å1.12Å
CDCEsing1.53Å1.52Å
CDHD2sing1.10Å1.11Å
CDHD3sing1.10Å1.11Å
CENZsing1.46Å1.44Å
CEHE2sing1.10Å1.12Å
CEHE3sing1.10Å1.11Å
NZHZsing1.02Å1.02Å
COdoub1.22Å1.24Å
COXTsing1.36Å61.16Å
OXTHXTsing0.98Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P116.0°111.4°
O1PPO5'108.9°111.8°
O1PPNZ100.8°116.5°
O2PPO5'109.9°101.7°
O2PPNZ101.1°106.3°
PO2PHOP2116.0°118.6°
O5'PNZ120.1°108.1°
PO5'C5'125.6°120.3°
PNZCE111.4°118.6°
PNZHZ111.5°115.6°
O5'C5'C4'118.5°109.0°
O5'C5'H5'1109.0°108.8°
O5'C5'H5'2109.0°108.8°
C4'C5'H5'1109.0°110.5°
C4'C5'H5'2108.9°110.6°
C5'C4'O4'119.4°108.4°
C5'C4'C3'113.2°112.9°
C5'C4'H4'97.7°109.3°
H5'1C5'H5'2101.1°109.1°
O4'C4'C3'104.3°106.5°
O4'C4'H4'107.8°107.6°
C4'O4'C1'106.2°108.8°
C3'C4'H4'114.7°112.0°
C4'C3'O3'111.8°108.8°
C4'C3'C2'102.0°102.3°
C4'C3'H3'113.1°114.6°
O4'C1'C2'106.4°106.2°
O4'C1'N9115.4°109.7°
O4'C1'H1'109.1°108.9°
O3'C3'C2'110.3°109.5°
O3'C3'H3'105.2°107.7°
C3'O3'HO3'111.8°106.4°
C2'C3'H3'114.6°113.8°
C3'C2'O2'108.2°113.1°
C3'C2'C1'103.3°101.4°
C3'C2'H2'113.4°110.3°
O2'C2'C1'107.3°111.9°
O2'C2'H2'109.9°108.9°
C2'O2'HO2'108.2°107.3°
C1'C2'H2'114.3°111.1°
C2'C1'N9113.3°114.0°
C2'C1'H1'111.3°112.7°
N9C1'H1'101.5°105.3°
C1'N9C8128.6°126.0°
C1'N9C4127.0°127.3°
C8N9C4104.4°106.6°
N9C8N7115.9°112.4°
N9C8H8123.8°122.0°
N9C4C5108.0°104.9°
N9C4N3124.9°126.0°
N7C8H8120.3°125.6°
C8N7C5102.0°103.9°
N7C5C6129.8°128.7°
N7C5C4109.8°112.1°
C6C5C4120.4°119.2°
C5C6O6127.7°123.8°
C5C6N1111.9°110.8°
C5C4N3127.2°129.0°
O6C6N1120.3°125.4°
C6N1C2124.5°125.3°
C6N1HN1118.3°117.4°
C2N1HN1117.2°117.3°
N1C2N2118.5°115.4°
N1C2N3122.1°122.6°
N2C2N3119.4°122.0°
C2N2HN21118.5°118.3°
C2N2HN22109.0°118.3°
C2N3C4113.8°113.0°
HN21N2HN22109.0°123.4°
CANH109.5°119.1°
CANH2112.2°119.1°
NCACB109.5°112.5°
NCAC107.2°106.5°
NCAHA111.4°106.2°
HNH2112.2°120.5°
CBCAC110.9°110.2°
CBCAHA107.8°112.2°
CACBCG115.3°114.6°
CACBHB2110.0°109.4°
CACBHB3110.1°109.5°
CCAHA110.0°109.0°
CACO120.4°125.2°
CACOXT133.9°111.9°
CGCBHB2110.1°108.1°
CGCBHB3110.1°109.0°
CBCGCD106.5°113.2°
CBCGHG2113.3°107.9°
CBCGHG3113.3°109.7°
HB2CBHB3100.2°105.9°
CDCGHG2113.3°108.9°
CDCGHG3113.3°110.3°
CGCDCE110.7°113.0°
CGCDHD2111.7°110.2°
CGCDHD3111.7°109.2°
HG2CGHG397.1°106.5°
CECDHD2111.7°109.2°
CECDHD3111.7°108.4°
CDCENZ111.0°112.0°
CDCEHE2111.6°110.0°
CDCEHE3111.7°109.1°
HD2CDHD398.7°106.7°
NZCEHE2111.6°109.2°
NZCEHE3111.6°109.0°
CENZHZ111.5°108.2°
HE2CEHE398.8°107.4°
OCOXT104.2°122.8°
COXTHXT133.9°115.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO5'124.1°119.2°
O1PPO2PNZ108.0°127.8°
O1PPO5'NZ115.3°129.5°
O1PPO2PHOP2180.0°6.6°
O1PPO5'C5'43.9°170.5°
O1PPNZCE159.6°60.0°
O1PPNZHZ75.0°169.1°
O2PPO5'NZ116.6°111.6°
O2PPO5'C5'172.0°51.6°
O2PPNZCE80.8°175.3°
O2PPNZHZ44.5°44.4°
O5'PO2PHOP255.9°112.6°
PO5'C5'C4'8.5°180.0°
PO5'C5'H5'1133.8°59.4°
PO5'C5'H5'2116.7°59.3°
O5'PNZCE40.1°66.8°
O5'PNZHZ165.5°64.1°
NZPO2PHOP272.0°134.4°
NZPO5'C5'71.4°60.0°
PNZCECD169.1°165.8°
PNZCEHZ125.3°134.2°
PNZCEHE265.7°43.7°
PNZCEHE343.8°73.3°
O5'C5'C4'H5'1125.3°119.5°
O5'C5'C4'H5'2125.3°119.6°
O5'C5'H5'1H5'2114.7°118.6°
O5'C5'C4'O4'56.0°61.8°
O5'C5'C4'C3'179.4°179.5°
O5'C5'C4'H4'59.5°55.1°
C4'C5'H5'1H5'2114.6°121.8°
C5'C4'O4'C3'127.6°121.8°
C5'C4'O4'H4'110.1°118.0°
C5'C4'C3'H4'111.0°123.8°
C5'C4'O4'C1'161.1°114.3°
C5'C4'C3'O3'68.1°154.1°
C5'C4'C3'C2'174.1°90.2°
C5'C4'C3'H3'50.5°33.5°
H5'1C5'C4'O4'69.3°57.7°
H5'1C5'C4'C3'54.1°60.0°
H5'1C5'C4'H4'175.2°174.7°
H5'2C5'C4'O4'178.7°178.6°
H5'2C5'C4'C3'55.3°60.9°
H5'2C5'C4'H4'65.8°64.4°
O4'C4'C3'H4'117.7°117.3°
O4'C4'C3'O3'160.6°87.1°
O4'C4'C3'C2'42.8°28.6°
O4'C4'C3'H3'80.8°152.3°
C4'O4'C1'C2'10.9°17.0°
C4'O4'C1'N9137.4°140.6°
C4'O4'C1'H1'109.2°104.6°
C3'C4'O4'C1'33.4°7.5°
C4'C3'O3'C2'112.8°111.0°
C4'C3'O3'H3'123.2°124.7°
C4'C3'C2'H3'122.6°124.1°
C4'C3'O3'HO3'180.0°66.6°
C4'C3'C2'O2'78.7°157.4°
C4'C3'C2'C1'34.9°37.4°
C4'C3'C2'H2'159.2°80.3°
H4'C4'O4'C1'88.9°127.7°
H4'C4'C3'O3'42.9°30.2°
H4'C4'C3'C2'74.9°146.0°
H4'C4'C3'H3'161.5°90.4°
O4'C1'C2'C3'15.4°34.3°
O4'C1'C2'O2'98.8°155.0°
O4'C1'C2'N9127.8°120.9°
O4'C1'C2'H1'118.7°119.2°
O4'C1'C2'H2'139.1°83.0°
O4'C1'N9H1'117.7°117.1°
O4'C1'N9C898.9°62.9°
O4'C1'N9C480.2°117.1°
O3'C3'C2'H3'118.5°120.6°
O3'C3'C2'O2'40.3°42.1°
O3'C3'C2'C1'153.8°77.8°
O3'C3'C2'H2'81.9°164.4°
C2'C3'O3'HO3'67.2°177.7°
C3'C2'O2'C1'110.9°113.8°
C3'C2'O2'H2'124.3°123.0°
C3'C2'C1'H2'123.7°117.2°
C3'C2'O2'HO2'180.0°77.7°
C3'C2'C1'N9112.4°155.2°
C3'C2'C1'H1'134.1°84.9°
H3'C3'O3'HO3'56.8°58.1°
H3'C3'C2'O2'158.7°78.5°
H3'C3'C2'C1'87.7°161.6°
H3'C3'C2'H2'36.6°43.8°
O2'C2'C1'H2'122.1°122.0°
O2'C2'C1'N9133.4°84.1°
O2'C2'C1'H1'19.9°35.9°
C1'C2'O2'HO2'69.1°36.0°
C2'C1'N9H1'119.4°124.0°
C2'C1'N9C8138.2°56.0°
C2'C1'N9C442.7°123.9°
H2'C2'O2'HO2'55.7°159.2°
H2'C2'C1'N911.3°37.9°
H2'C2'C1'H1'102.2°157.9°
C1'N9C8C4179.2°180.0°
C1'N9C8N7179.1°180.0°
C1'N9C8H80.9°0.0°
C1'N9C4C5179.0°180.0°
C1'N9C4N30.0°0.1°
H1'C1'N9C818.8°180.0°
H1'C1'N9C4162.1°0.1°
N9C8N7H8180.0°180.0°
N9C8N7C50.0°0.0°
C8N9C4C50.3°0.1°
C8N9C4N3179.2°180.0°
C4N9C8N70.2°0.1°
C4N9C8H8179.8°180.0°
N9C4C5N70.3°0.1°
N9C4C5C6178.0°180.0°
N9C4C5N3178.9°179.9°
N9C4N3C2179.0°179.9°
C8N7C5C6177.6°180.0°
C8N7C5C40.2°0.0°
H8C8N7C5180.0°180.0°
N7C5C6C4177.2°180.0°
N7C5C6O62.9°0.0°
N7C5C6N1179.8°180.0°
N7C5C4N3179.2°180.0°
C5C6O6N1176.7°180.0°
C5C6N1C22.7°0.0°
C5C6N1HN1177.3°180.0°
C6C5C4N33.1°0.1°
C4C5C6O6179.9°180.0°
C4C5C6N13.0°0.1°
C5C4N3C22.2°0.1°
O6C6N1C2179.9°180.0°
O6C6N1HN10.1°0.0°
C6N1C2HN1180.0°180.0°
C6N1C2N2179.0°180.0°
C6N1C2N32.2°0.0°
N1C2N2N3178.8°180.0°
N1C2N2HN21179.9°79.4°
N1C2N2HN2254.7°100.6°
N1C2N3C41.6°0.0°
HN1N1C2N20.9°0.0°
HN1N1C2N3177.8°180.0°
C2N2HN21HN22125.3°180.0°
N2C2N3C4179.6°179.9°
N3C2N2HN211.3°100.6°
N3C2N2HN22124.1°79.4°
CANHH2125.2°166.5°
NCACBC118.1°118.7°
NCACBHA121.4°119.7°
NCACHA121.3°114.2°
NCACBCG173.8°57.1°
NCACBHB248.6°178.7°
NCACBHB360.9°65.6°
NCACO79.1°5.8°
NCACOXT117.7°176.6°
HNCACB180.0°167.1°
HNCAC59.7°72.1°
HNCAHA60.8°44.0°
H2NCACB54.8°0.4°
H2NCAC175.1°121.2°
H2NCAHA64.4°122.7°
CBCACHA119.2°123.5°
CACBCGHB2125.2°122.2°
CACBCGHB3125.2°123.1°
CACBHB2HB3115.9°117.9°
CACBCGCD173.8°177.8°
CACBCGHG260.9°61.6°
CACBCGHG348.5°54.1°
CBCACO40.4°116.5°
CBCACOXT122.8°61.2°
CCACBCG68.1°61.5°
CCACBHB2166.7°60.0°
CCACBHB357.1°175.7°
CACOOXT167.6°177.4°
CACOXTHXT180.0°177.7°
HACACBCG52.4°176.8°
HACACBHB272.8°61.7°
HACACBHB3177.7°54.0°
HACACO159.6°120.0°
HACACOXT3.6°62.3°
CGCBHB2HB3115.9°116.7°
CBCGCDHG2125.3°120.0°
CBCGCDHG3125.3°123.4°
CBCGHG2HG3119.2°117.7°
CBCGCDCE172.5°177.6°
CBCGCDHD247.3°60.0°
CBCGCDHD362.2°56.9°
HB2CBCGCD48.6°59.9°
HB2CBCGHG2173.9°60.7°
HB2CBCGHG376.7°176.3°
HB3CBCGCD61.0°54.8°
HB3CBCGHG264.3°175.4°
HB3CBCGHG3173.7°69.0°
CDCGHG2HG3119.2°119.0°
CGCDCEHD2125.2°123.0°
CGCDCEHD3125.3°121.2°
CGCDHD2HD3117.7°118.5°
CGCDCENZ64.1°178.4°
CGCDCEHE261.1°59.9°
CGCDCEHE3170.6°57.7°
HG2CGCDCE62.2°57.5°
HG2CGCDHD2172.6°179.9°
HG2CGCDHD363.1°63.1°
HG3CGCDCE47.2°59.0°
HG3CGCDHD278.0°63.3°
HG3CGCDHD3172.5°179.7°
CECDHD2HD3117.7°116.9°
CDCENZHE2125.2°122.1°
CDCENZHE3125.3°120.8°
CDCEHE2HE3117.6°118.7°
CDCENZHZ43.8°60.0°
HD2CDCENZ170.7°58.7°
HD2CDCEHE264.1°63.0°
HD2CDCEHE345.4°179.4°
HD3CDCENZ61.2°57.2°
HD3CDCEHE2173.6°178.9°
HD3CDCEHE364.1°63.5°
NZCEHE2HE3117.5°118.1°
HE2CENZHZ169.0°177.9°
HE3CENZHZ81.5°60.8°
OCOXTHXT14.9°0.0°

222415

PDB entries from 2024-07-10

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