GPK

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1A	C2A	doub	1.35Å	1.39Å
C1A	N1'	sing	1.37Å	1.42Å
F1	C2A	sing	1.35Å	1.34Å
C2A	C3A	sing	1.42Å	1.40Å
C3A	O3A	doub	1.22Å	1.24Å
C3A	N4	sing	1.35Å	1.36Å
N4	C5A	sing	1.35Å	1.35Å
C5A	O5A	doub	1.22Å	1.26Å
C5A	N1'	sing	1.35Å	1.41Å
C1	N1'	sing	1.46Å	1.50Å
C1	C2	sing	1.53Å	1.53Å
C1	O5	sing	1.43Å	1.44Å
C2	O2	sing	1.43Å	1.43Å
C2	C3	sing	1.53Å	1.54Å
C3	O3	sing	1.43Å	1.41Å
C3	C4	sing	1.53Å	1.52Å
C4	O4	sing	1.43Å	1.44Å
C4	C5	sing	1.53Å	1.54Å
C5	O5	sing	1.43Å	1.42Å
C5	C6	sing	1.53Å	1.54Å
C6	O6	sing	1.43Å	1.44Å
C1A	H1A	sing	1.08Å	1.08Å
N4	HN4	sing	0.97Å	1.00Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2A	C1A	N1'	118.8°	119.6°
C1A	C2A	F1	119.5°	120.4°
C1A	C2A	C3A	119.5°	119.2°
C2A	C1A	H1A	120.6°	120.2°
C1A	N1'	C5A	119.1°	120.6°
C1A	N1'	C1	120.2°	119.7°
N1'	C1A	H1A	120.6°	120.2°
F1	C2A	C3A	121.0°	120.4°
C2A	C3A	O3A	119.2°	120.3°
C2A	C3A	N4	120.8°	119.4°
O3A	C3A	N4	120.0°	120.3°
C3A	N4	C5A	121.3°	120.3°
C3A	N4	HN4	119.3°	119.8°
N4	C5A	O5A	121.5°	119.5°
N4	C5A	N1'	119.8°	120.9°
C5A	N4	HN4	119.4°	119.8°
O5A	C5A	N1'	118.4°	119.5°
C5A	N1'	C1	119.4°	119.7°
N1'	C1	C2	114.5°	109.5°
N1'	C1	O5	109.6°	109.5°
N1'	C1	H1	105.9°	109.5°
C2	C1	O5	109.5°	109.4°
C1	C2	O2	109.9°	109.6°
C1	C2	C3	107.8°	109.1°
C2	C1	H1	106.0°	109.4°
C1	C2	H2	111.0°	109.5°
C1	O5	C5	111.6°	114.1°
O5	C1	H1	111.3°	109.5°
O2	C2	C3	111.5°	109.5°
O2	C2	H2	107.3°	109.5°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	110.7°	109.5°
C2	C3	C4	111.7°	109.1°
C3	C2	H2	109.4°	109.6°
C2	C3	H3	107.1°	109.6°
O3	C3	C4	109.6°	109.5°
O3	C3	H3	109.4°	109.5°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	107.6°	109.5°
C3	C4	C5	112.2°	109.1°
C4	C3	H3	108.3°	109.6°
C3	C4	H4	109.8°	109.5°
O4	C4	C5	111.9°	109.6°
O4	C4	H4	110.1°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	O5	109.4°	109.5°
C4	C5	C6	115.0°	109.5°
C5	C4	H4	105.2°	109.5°
C4	C5	H5	104.4°	109.4°
O5	C5	C6	105.1°	109.5°
O5	C5	H5	114.5°	109.5°
C5	C6	O6	111.0°	109.5°
C6	C5	H5	108.8°	109.5°
C5	C6	H61	109.0°	109.5°
C5	C6	H62	109.0°	109.4°
O6	C6	H61	109.0°	109.4°
O6	C6	H62	108.9°	109.5°
C6	O6	HO6	109.5°	114.0°
H61	C6	H62	110.0°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2A	C1A	N1'	H1A	180.0°	179.8°
C1A	C2A	F1	C3A	179.3°	179.9°
C1A	C2A	C3A	O3A	178.6°	179.9°
C1A	C2A	C3A	N4	0.3°	0.0°
C2A	C1A	N1'	C5A	8.8°	0.1°
C2A	C1A	N1'	C1	175.9°	180.0°
N1'	C1A	C2A	F1	175.9°	180.0°
N1'	C1A	C2A	C3A	4.8°	0.1°
C1A	N1'	C5A	N4	8.4°	0.0°
C1A	N1'	C5A	O5A	177.8°	180.0°
C1A	N1'	C5A	C1	167.2°	179.9°
C1A	N1'	C1	C2	39.2°	115.0°
C1A	N1'	C1	O5	84.3°	125.0°
C1A	N1'	C1	H1	155.6°	5.0°
F1	C2A	C3A	O3A	0.7°	0.0°
F1	C2A	C3A	N4	179.6°	179.9°
F1	C2A	C1A	H1A	4.1°	0.2°
C2A	C3A	O3A	N4	178.9°	179.9°
C2A	C3A	N4	C5A	0.2°	0.1°
C3A	C2A	C1A	H1A	175.2°	179.8°
C2A	C3A	N4	HN4	179.8°	180.0°
O3A	C3A	N4	C5A	179.1°	180.0°
O3A	C3A	N4	HN4	0.9°	0.1°
C3A	N4	C5A	HN4	180.0°	179.9°
C3A	N4	C5A	O5A	177.5°	179.9°
C3A	N4	C5A	N1'	3.9°	0.1°
N4	C5A	O5A	N1'	173.7°	180.0°
N4	C5A	N1'	C1	175.6°	179.9°
O5A	C5A	N1'	C1	10.6°	0.1°
O5A	C5A	N4	HN4	2.5°	0.0°
C5A	N1'	C1	C2	127.8°	65.1°
C5A	N1'	C1	O5	108.6°	54.9°
C5A	N1'	C1A	H1A	171.2°	179.8°
N1'	C5A	N4	HN4	176.1°	180.0°
C5A	N1'	C1	H1	11.5°	175.0°
N1'	C1	C2	O5	123.6°	120.0°
N1'	C1	C2	H1	116.3°	120.0°
N1'	C1	O5	H1	116.8°	120.1°
N1'	C1	C2	O2	54.6°	62.5°
N1'	C1	C2	C3	176.3°	177.6°
N1'	C1	O5	C5	165.6°	178.9°
C1	N1'	C1A	H1A	4.1°	0.2°
N1'	C1	C2	H2	63.9°	57.6°
C2	C1	O5	H1	116.8°	120.0°
C1	C2	O2	C3	119.5°	119.7°
C1	C2	O2	H2	120.8°	120.1°
C1	C2	C3	H2	120.8°	119.9°
C1	C2	C3	O3	174.0°	176.8°
C1	C2	C3	C4	51.6°	57.0°
C2	C1	O5	C5	67.9°	61.1°
C1	C2	O2	HO2	180.0°	180.0°
C1	C2	C3	H3	66.8°	63.0°
O5	C1	C2	O2	178.2°	177.5°
O5	C1	C2	C3	60.1°	57.6°
C1	O5	C5	C4	62.2°	61.2°
C1	O5	C5	C6	173.8°	178.8°
O5	C1	C2	H2	59.6°	62.3°
C1	O5	C5	H5	54.5°	58.8°
O2	C2	C3	H2	118.5°	120.2°
O2	C2	C3	O3	65.3°	63.2°
O2	C2	C3	C4	172.3°	176.9°
O2	C2	C1	H1	61.8°	57.5°
O2	C2	C3	H3	53.9°	56.9°
C2	C3	O3	C4	123.6°	119.6°
C2	C3	O3	H3	117.8°	120.2°
C2	C3	C4	H3	117.8°	120.0°
C2	C3	C4	O4	172.3°	176.9°
C2	C3	C4	C5	48.8°	57.0°
C3	C2	C1	H1	60.0°	62.4°
C3	C2	O2	HO2	60.5°	60.3°
C2	C3	O3	HO3	180.0°	180.0°
C2	C3	C4	H4	67.9°	62.9°
O3	C3	C4	H3	119.3°	120.2°
O3	C3	C4	O4	64.7°	63.2°
O3	C3	C4	C5	171.7°	176.8°
O3	C3	C2	H2	53.2°	57.0°
O3	C3	C4	H4	55.1°	56.9°
C3	C4	O4	C5	123.7°	119.7°
C3	C4	O4	H4	119.6°	120.1°
C3	C4	C5	H4	119.3°	119.9°
C3	C4	C5	O5	52.4°	57.6°
C3	C4	C5	C6	170.3°	177.6°
C4	C3	C2	H2	69.2°	62.9°
C4	C3	O3	HO3	56.4°	60.4°
C3	C4	O4	HO4	180.0°	60.0°
C3	C4	C5	H5	70.6°	62.4°
O4	C4	C5	H4	119.6°	120.2°
O4	C4	C5	O5	173.4°	177.5°
O4	C4	C5	C6	68.6°	62.5°
O4	C4	C3	H3	54.5°	56.9°
O4	C4	C5	H5	50.5°	57.5°
C4	C5	O5	C6	124.0°	120.0°
C4	C5	O5	H5	116.7°	120.0°
C4	C5	C6	H5	116.6°	120.0°
C4	C5	C6	O6	45.1°	175.0°
C5	C4	C3	H3	69.0°	63.0°
C5	C4	O4	HO4	56.2°	179.7°
C4	C5	C6	H61	165.2°	55.0°
C4	C5	C6	H62	74.9°	65.0°
O5	C5	C6	H5	123.0°	120.0°
O5	C5	C6	O6	75.2°	65.0°
C5	O5	C1	H1	48.9°	58.8°
O5	C5	C4	H4	66.9°	62.3°
O5	C5	C6	H61	44.8°	175.0°
O5	C5	C6	H62	164.8°	55.0°
C5	C6	O6	H61	120.0°	120.0°
C5	C6	O6	H62	120.0°	120.0°
C6	C5	C4	H4	51.0°	57.7°
C5	C6	H61	H62	119.4°	120.0°
C5	C6	O6	HO6	180.0°	179.9°
O6	C6	C5	H5	161.7°	55.0°
O6	C6	H61	H62	119.3°	120.0°
H1	C1	C2	H2	179.7°	177.7°
H2	C2	O2	HO2	59.2°	59.9°
H2	C2	C3	H3	172.3°	177.1°
H3	C3	O3	HO3	62.2°	59.8°
H3	C3	C4	H4	174.3°	177.1°
H4	C4	O4	HO4	60.5°	60.1°
H4	C4	C5	H5	170.1°	177.7°
H5	C5	C6	H61	78.2°	65.0°
H5	C5	C6	H62	41.7°	175.0°
H61	C6	O6	HO6	60.0°	60.0°
H62	C6	O6	HO6	60.0°	60.0°

Definition date:	2011-08-10
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	3SYR