GOM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | HN2 | sing | 1.01Å | 1.02Å | |
| N | HN3 | sing | 1.01Å | 1.02Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| C | CA | sing | 1.53Å | 1.54Å | |
| C | OP3 | sing | 1.43Å | 1.42Å | |
| C | HC1 | sing | 1.09Å | 1.12Å | |
| C | HC2 | sing | 1.09Å | 1.11Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| CB | CG | sing | 1.53Å | 1.52Å | |
| CB | HB1 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CG | CD | sing | 1.51Å | 1.51Å | |
| CG | HG1 | sing | 1.09Å | 1.12Å | |
| CG | HG2 | sing | 1.09Å | 1.12Å | |
| CD | OE1 | doub | 1.22Å | 1.25Å | |
| CD | OE2 | sing | 1.22Å | 1.24Å | |
| P | OP1 | doub | 1.54Å | 1.49Å | |
| P | OP2 | sing | 1.55Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.35Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.38Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C6 | C5 | doub | 1.40Å | 1.41Å | Aromatic |
| N6 | HN61 | sing | 0.97Å | 1.02Å | |
| N6 | HN62 | sing | 0.97Å | 1.02Å | |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | HN2 | 111.6° | 109.5° |
| CA | N | HN3 | 111.1° | 109.5° |
| CA | N | H | 111.6° | 109.5° |
| N | CA | C | 111.1° | 109.5° |
| N | CA | CB | 109.5° | 109.5° |
| N | CA | HA | 108.4° | 109.5° |
| HN2 | N | HN3 | 111.6° | 109.5° |
| HN2 | N | H | 98.8° | 109.4° |
| HN3 | N | H | 111.6° | 109.4° |
| CA | C | OP3 | 110.3° | 109.5° |
| CA | C | HC1 | 111.9° | 109.4° |
| CA | C | HC2 | 111.9° | 109.5° |
| C | CA | CB | 109.9° | 109.5° |
| C | CA | HA | 108.1° | 109.4° |
| OP3 | C | HC1 | 111.9° | 109.4° |
| OP3 | C | HC2 | 111.9° | 109.5° |
| C | OP3 | P | 121.1° | 106.8° |
| HC1 | C | HC2 | 98.5° | 109.5° |
| CB | CA | HA | 109.8° | 109.4° |
| CA | CB | CG | 114.4° | 109.4° |
| CA | CB | HB1 | 110.4° | 109.5° |
| CA | CB | HB2 | 110.4° | 109.5° |
| CG | CB | HB1 | 110.4° | 109.5° |
| CG | CB | HB2 | 110.4° | 109.5° |
| CB | CG | CD | 112.5° | 109.4° |
| CB | CG | HG1 | 111.1° | 109.5° |
| CB | CG | HG2 | 111.1° | 109.5° |
| HB1 | CB | HB2 | 99.9° | 109.5° |
| CD | CG | HG1 | 111.1° | 109.5° |
| CD | CG | HG2 | 111.1° | 109.5° |
| CG | CD | OE1 | 119.3° | 120.0° |
| CG | CD | OE2 | 117.3° | 120.0° |
| HG1 | CG | HG2 | 99.2° | 109.5° |
| OE1 | CD | OE2 | 123.4° | 120.0° |
| OP1 | P | OP2 | 119.4° | 109.5° |
| OP1 | P | OP3 | 107.0° | 109.5° |
| OP1 | P | O5' | 109.6° | 109.4° |
| OP2 | P | OP3 | 108.7° | 109.4° |
| OP2 | P | O5' | 106.7° | 109.4° |
| OP3 | P | O5' | 104.5° | 109.5° |
| P | O5' | C5' | 121.7° | 106.8° |
| O5' | C5' | C4' | 110.5° | 109.5° |
| O5' | C5' | H5' | 111.8° | 109.5° |
| O5' | C5' | H5'' | 111.8° | 109.4° |
| C4' | C5' | H5' | 111.8° | 109.5° |
| C4' | C5' | H5'' | 111.8° | 109.5° |
| C5' | C4' | O4' | 109.4° | 110.4° |
| C5' | C4' | C3' | 111.8° | 110.5° |
| C5' | C4' | H4' | 106.8° | 110.3° |
| H5' | C5' | H5'' | 98.6° | 109.5° |
| O4' | C4' | C3' | 105.6° | 104.8° |
| O4' | C4' | H4' | 112.9° | 110.4° |
| C4' | O4' | C1' | 110.1° | 105.3° |
| C3' | C4' | H4' | 110.5° | 110.4° |
| C4' | C3' | C2' | 106.7° | 104.1° |
| C4' | C3' | O3' | 117.5° | 110.5° |
| C4' | C3' | H3' | 109.7° | 110.5° |
| O4' | C1' | N9 | 111.2° | 110.4° |
| O4' | C1' | C2' | 110.2° | 104.9° |
| O4' | C1' | H1' | 111.8° | 110.4° |
| N9 | C1' | C2' | 118.7° | 110.4° |
| N9 | C1' | H1' | 101.6° | 110.3° |
| C1' | N9 | C4 | 123.3° | 126.3° |
| C1' | N9 | C8 | 130.9° | 126.3° |
| C2' | C1' | H1' | 102.8° | 110.4° |
| C1' | C2' | O2' | 108.4° | 110.8° |
| C1' | C2' | C3' | 101.6° | 104.0° |
| C1' | C2' | H2' | 115.7° | 110.4° |
| C4 | N9 | C8 | 105.8° | 107.4° |
| N9 | C4 | N3 | 127.0° | 134.9° |
| N9 | C4 | C5 | 105.9° | 106.0° |
| N9 | C8 | N7 | 113.7° | 110.0° |
| N9 | C8 | H8 | 125.2° | 125.0° |
| N3 | C4 | C5 | 127.0° | 119.1° |
| C4 | N3 | C2 | 110.6° | 120.6° |
| C4 | C5 | C6 | 116.8° | 118.1° |
| C4 | C5 | N7 | 110.7° | 107.1° |
| N3 | C2 | N1 | 129.1° | 122.5° |
| N3 | C2 | H2 | 115.0° | 118.8° |
| N1 | C2 | H2 | 115.8° | 118.7° |
| C2 | N1 | C6 | 118.6° | 121.2° |
| N1 | C6 | N6 | 118.4° | 120.8° |
| N1 | C6 | C5 | 117.8° | 118.5° |
| N6 | C6 | C5 | 123.8° | 120.8° |
| C6 | N6 | HN61 | 109.0° | 120.0° |
| C6 | N6 | HN62 | 118.4° | 120.0° |
| C6 | C5 | N7 | 132.5° | 134.7° |
| HN61 | N6 | HN62 | 109.0° | 119.9° |
| C5 | N7 | C8 | 103.9° | 109.4° |
| N7 | C8 | H8 | 121.2° | 125.0° |
| O2' | C2' | C3' | 111.3° | 110.5° |
| O2' | C2' | H2' | 106.8° | 110.5° |
| C2' | O2' | HO2' | 108.4° | 106.7° |
| C3' | C2' | H2' | 113.0° | 110.5° |
| C2' | C3' | O3' | 118.3° | 110.5° |
| C2' | C3' | H3' | 108.7° | 110.5° |
| O3' | C3' | H3' | 94.9° | 110.5° |
| C3' | O3' | HO3' | 117.6° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | HN2 | HN3 | 125.0° | 120.0° |
| CA | N | HN2 | H | 117.5° | 120.0° |
| CA | N | HN3 | H | 125.2° | 120.0° |
| N | CA | C | CB | 121.3° | 120.0° |
| N | CA | C | HA | 118.9° | 120.0° |
| N | CA | C | OP3 | 32.2° | 64.9° |
| N | CA | C | HC1 | 93.1° | 55.0° |
| N | CA | C | HC2 | 157.4° | 175.0° |
| N | CA | CB | HA | 118.9° | 120.1° |
| N | CA | CB | CG | 178.4° | 65.0° |
| N | CA | CB | HB1 | 53.2° | 55.0° |
| N | CA | CB | HB2 | 56.3° | 175.0° |
| HN2 | N | HN3 | H | 109.5° | 120.0° |
| HN2 | N | CA | C | 54.7° | 60.0° |
| HN2 | N | CA | CB | 66.8° | 180.0° |
| HN2 | N | CA | HA | 173.4° | 60.0° |
| HN3 | N | CA | C | 180.0° | 60.0° |
| HN3 | N | CA | CB | 58.5° | 60.0° |
| HN3 | N | CA | HA | 61.3° | 180.0° |
| H | N | CA | C | 54.7° | 180.0° |
| H | N | CA | CB | 176.3° | 60.0° |
| H | N | CA | HA | 63.9° | 60.0° |
| CA | C | OP3 | HC1 | 125.3° | 119.9° |
| CA | C | OP3 | HC2 | 125.2° | 120.1° |
| CA | C | HC1 | HC2 | 117.8° | 120.1° |
| C | CA | CB | HA | 118.7° | 119.9° |
| C | CA | CB | CG | 56.1° | 175.0° |
| C | CA | CB | HB1 | 69.1° | 65.0° |
| C | CA | CB | HB2 | 178.6° | 55.0° |
| CA | C | OP3 | P | 179.4° | 180.0° |
| OP3 | C | HC1 | HC2 | 117.8° | 120.0° |
| OP3 | C | CA | CB | 153.5° | 175.0° |
| OP3 | C | CA | HA | 86.7° | 55.1° |
| C | OP3 | P | OP1 | 122.2° | 54.9° |
| C | OP3 | P | OP2 | 107.6° | 65.1° |
| C | OP3 | P | O5' | 6.0° | 175.0° |
| HC1 | C | CA | CB | 28.3° | 65.1° |
| HC1 | C | CA | HA | 148.0° | 175.0° |
| HC1 | C | OP3 | P | 54.1° | 60.1° |
| HC2 | C | CA | CB | 81.2° | 55.0° |
| HC2 | C | CA | HA | 38.5° | 65.0° |
| HC2 | C | OP3 | P | 55.4° | 59.9° |
| CA | CB | CG | HB1 | 125.3° | 120.0° |
| CA | CB | CG | HB2 | 125.3° | 120.0° |
| CA | CB | HB1 | HB2 | 116.3° | 120.0° |
| CA | CB | CG | CD | 176.8° | 180.0° |
| CA | CB | CG | HG1 | 51.5° | 60.0° |
| CA | CB | CG | HG2 | 58.0° | 60.0° |
| HA | CA | CB | CG | 62.6° | 55.0° |
| HA | CA | CB | HB1 | 172.1° | 175.1° |
| HA | CA | CB | HB2 | 62.7° | 65.0° |
| CG | CB | HB1 | HB2 | 116.2° | 120.0° |
| CB | CG | CD | HG1 | 125.2° | 120.0° |
| CB | CG | CD | HG2 | 125.3° | 120.0° |
| CB | CG | HG1 | HG2 | 117.0° | 120.0° |
| CB | CG | CD | OE1 | 78.3° | 0.0° |
| CB | CG | CD | OE2 | 101.2° | 179.9° |
| HB1 | CB | CG | CD | 58.0° | 60.0° |
| HB1 | CB | CG | HG1 | 176.8° | 180.0° |
| HB1 | CB | CG | HG2 | 67.3° | 60.0° |
| HB2 | CB | CG | CD | 51.5° | 60.0° |
| HB2 | CB | CG | HG1 | 73.8° | 60.0° |
| HB2 | CB | CG | HG2 | 176.8° | 180.0° |
| CD | CG | HG1 | HG2 | 117.0° | 120.0° |
| CG | CD | OE1 | OE2 | 179.4° | 179.9° |
| HG1 | CG | CD | OE1 | 46.9° | 120.0° |
| HG1 | CG | CD | OE2 | 133.6° | 59.9° |
| HG2 | CG | CD | OE1 | 156.4° | 120.0° |
| HG2 | CG | CD | OE2 | 24.1° | 60.1° |
| OP1 | P | OP2 | OP3 | 123.0° | 120.1° |
| OP1 | P | OP2 | O5' | 124.8° | 120.0° |
| OP1 | P | OP3 | O5' | 116.2° | 120.0° |
| OP1 | P | O5' | C5' | 23.5° | 55.0° |
| OP2 | P | OP3 | O5' | 113.6° | 120.0° |
| OP2 | P | O5' | C5' | 154.1° | 65.0° |
| OP3 | P | O5' | C5' | 90.9° | 175.1° |
| P | O5' | C5' | C4' | 171.6° | 180.0° |
| P | O5' | C5' | H5' | 63.1° | 59.9° |
| P | O5' | C5' | H5'' | 46.3° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.1° |
| O5' | C5' | C4' | H5'' | 125.2° | 119.9° |
| O5' | C5' | H5' | H5'' | 117.7° | 119.9° |
| O5' | C5' | C4' | O4' | 69.4° | 66.4° |
| O5' | C5' | C4' | C3' | 47.2° | 178.1° |
| O5' | C5' | C4' | H4' | 168.2° | 55.8° |
| C4' | C5' | H5' | H5'' | 117.8° | 120.0° |
| C5' | C4' | O4' | C3' | 120.5° | 119.0° |
| C5' | C4' | O4' | H4' | 118.7° | 122.2° |
| C5' | C4' | C3' | H4' | 118.8° | 122.3° |
| C5' | C4' | O4' | C1' | 113.1° | 159.4° |
| C5' | C4' | C3' | C2' | 98.9° | 142.9° |
| C5' | C4' | C3' | O3' | 125.5° | 98.4° |
| C5' | C4' | C3' | H3' | 18.7° | 24.2° |
| H5' | C5' | C4' | O4' | 55.8° | 173.5° |
| H5' | C5' | C4' | C3' | 172.5° | 58.1° |
| H5' | C5' | C4' | H4' | 66.6° | 64.3° |
| H5'' | C5' | C4' | O4' | 165.4° | 53.5° |
| H5'' | C5' | C4' | C3' | 78.0° | 61.9° |
| H5'' | C5' | C4' | H4' | 42.9° | 175.8° |
| O4' | C4' | C3' | H4' | 122.4° | 118.8° |
| C4' | O4' | C1' | N9 | 141.8° | 159.3° |
| C4' | O4' | C1' | C2' | 8.2° | 40.4° |
| C4' | O4' | C1' | H1' | 105.4° | 78.5° |
| O4' | C4' | C3' | C2' | 20.0° | 24.0° |
| O4' | C4' | C3' | O3' | 115.6° | 142.7° |
| O4' | C4' | C3' | H3' | 137.6° | 94.7° |
| C3' | C4' | O4' | C1' | 7.4° | 40.5° |
| C4' | C3' | C2' | C1' | 23.7° | 0.1° |
| C4' | C3' | C2' | O2' | 138.9° | 118.8° |
| C4' | C3' | C2' | O3' | 135.2° | 118.7° |
| C4' | C3' | C2' | H3' | 118.3° | 118.7° |
| C4' | C3' | C2' | H2' | 101.0° | 118.6° |
| C4' | C3' | O3' | H3' | 115.3° | 122.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| H4' | C4' | O4' | C1' | 128.2° | 78.4° |
| H4' | C4' | C3' | C2' | 142.4° | 94.8° |
| H4' | C4' | C3' | O3' | 6.7° | 23.9° |
| H4' | C4' | C3' | H3' | 100.1° | 146.5° |
| O4' | C1' | N9 | C2' | 129.3° | 115.5° |
| O4' | C1' | N9 | H1' | 119.0° | 122.2° |
| O4' | C1' | C2' | H1' | 119.2° | 118.9° |
| O4' | C1' | N9 | C4 | 107.3° | 157.9° |
| O4' | C1' | N9 | C8 | 75.2° | 22.1° |
| O4' | C1' | C2' | O2' | 137.3° | 142.6° |
| O4' | C1' | C2' | C3' | 19.9° | 23.8° |
| O4' | C1' | C2' | H2' | 102.9° | 94.7° |
| N9 | C1' | C2' | H1' | 111.0° | 122.2° |
| C1' | N9 | C4 | C8 | 178.1° | 180.0° |
| C1' | N9 | C4 | N3 | 2.8° | 0.0° |
| C1' | N9 | C4 | C5 | 176.4° | 179.7° |
| C1' | N9 | C8 | N7 | 176.2° | 180.0° |
| C1' | N9 | C8 | H8 | 3.8° | 0.1° |
| N9 | C1' | C2' | O2' | 93.0° | 98.5° |
| N9 | C1' | C2' | C3' | 149.7° | 142.8° |
| N9 | C1' | C2' | H2' | 26.9° | 24.2° |
| C2' | C1' | N9 | C4 | 123.4° | 86.5° |
| C2' | C1' | N9 | C8 | 54.1° | 93.4° |
| C1' | C2' | O2' | C3' | 111.0° | 114.7° |
| C1' | C2' | O2' | H2' | 125.3° | 122.6° |
| C1' | C2' | C3' | H2' | 124.7° | 118.5° |
| C1' | C2' | O2' | HO2' | 180.0° | 176.2° |
| C1' | C2' | C3' | O3' | 111.5° | 118.8° |
| C1' | C2' | C3' | H3' | 141.9° | 118.6° |
| H1' | C1' | N9 | C4 | 11.8° | 35.7° |
| H1' | C1' | N9 | C8 | 165.8° | 144.3° |
| H1' | C1' | C2' | O2' | 18.1° | 23.7° |
| H1' | C1' | C2' | C3' | 99.3° | 95.0° |
| H1' | C1' | C2' | H2' | 137.9° | 146.4° |
| N9 | C4 | N3 | C5 | 179.0° | 179.7° |
| N9 | C4 | N3 | C2 | 178.6° | 180.0° |
| N9 | C4 | C5 | C6 | 178.5° | 179.6° |
| N9 | C4 | C5 | N7 | 1.3° | 0.4° |
| C4 | N9 | C8 | N7 | 1.6° | 0.0° |
| C4 | N9 | C8 | H8 | 178.3° | 179.9° |
| C8 | N9 | C4 | N3 | 179.1° | 180.0° |
| C8 | N9 | C4 | C5 | 1.7° | 0.2° |
| N9 | C8 | N7 | C5 | 0.8° | 0.3° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| C4 | N3 | C2 | N1 | 0.1° | 0.1° |
| C4 | N3 | C2 | H2 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.7° | 0.6° |
| N3 | C4 | C5 | N7 | 179.5° | 179.8° |
| C5 | C4 | N3 | C2 | 0.4° | 0.4° |
| C4 | C5 | C6 | N1 | 0.5° | 0.6° |
| C4 | C5 | C6 | N6 | 179.1° | 179.7° |
| C4 | C5 | C6 | N7 | 179.8° | 178.9° |
| C4 | C5 | N7 | C8 | 0.3° | 0.5° |
| N3 | C2 | N1 | H2 | 180.0° | 180.0° |
| N3 | C2 | N1 | C6 | 0.2° | 0.1° |
| C2 | N1 | C6 | N6 | 179.5° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.3° |
| H2 | C2 | N1 | C6 | 179.8° | 180.0° |
| N1 | C6 | N6 | C5 | 179.6° | 179.7° |
| N1 | C6 | N6 | HN61 | 54.7° | 0.0° |
| N1 | C6 | N6 | HN62 | 180.0° | 179.7° |
| N1 | C6 | C5 | N7 | 179.7° | 179.5° |
| C6 | N6 | HN61 | HN62 | 130.6° | 179.7° |
| N6 | C6 | C5 | N7 | 0.6° | 0.8° |
| C5 | C6 | N6 | HN61 | 125.6° | 179.7° |
| C5 | C6 | N6 | HN62 | 0.4° | 0.6° |
| C6 | C5 | N7 | C8 | 179.4° | 179.5° |
| C5 | N7 | C8 | H8 | 179.2° | 179.8° |
| O2' | C2' | C3' | H2' | 120.1° | 122.7° |
| O2' | C2' | C3' | O3' | 3.7° | 0.1° |
| O2' | C2' | C3' | H3' | 102.9° | 122.5° |
| C3' | C2' | O2' | HO2' | 69.1° | 61.5° |
| C2' | C3' | O3' | H3' | 114.3° | 122.6° |
| C2' | C3' | O3' | HO3' | 49.5° | 65.3° |
| H2' | C2' | O2' | HO2' | 54.7° | 61.2° |
| H2' | C2' | C3' | O3' | 123.8° | 122.7° |
| H2' | C2' | C3' | H3' | 17.3° | 0.1° |
| H3' | C3' | O3' | HO3' | 64.8° | 57.3° |
