GO5
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C8 | C7 | sing | 1.53Å | 1.52Å | |
C8 | C6 | sing | 1.52Å | 1.50Å | |
C4 | C7 | sing | 1.53Å | 1.52Å | |
C4 | C3 | sing | 1.53Å | 1.50Å | |
C7 | N | sing | 1.46Å | 1.45Å | |
O | C6 | doub | 1.21Å | 1.23Å | |
C3 | C2 | sing | 1.53Å | 1.49Å | |
C6 | C5 | sing | 1.52Å | 1.51Å | |
CD1 | CE1 | doub | 1.38Å | 1.37Å | Aromatic |
CD1 | CG | sing | 1.38Å | 1.36Å | Aromatic |
N | CA | sing | 1.47Å | 1.50Å | |
N | C1 | sing | 1.46Å | 1.45Å | |
CB | CA | sing | 1.53Å | 1.50Å | |
CB | CG | sing | 1.51Å | 1.47Å | |
CE1 | CZ | sing | 1.38Å | 1.36Å | Aromatic |
C2 | C1 | sing | 1.53Å | 1.51Å | |
C5 | C1 | sing | 1.53Å | 1.51Å | |
CG | CD2 | doub | 1.38Å | 1.36Å | Aromatic |
CZ | CL1 | sing | 1.74Å | 1.72Å | |
CZ | CE2 | doub | 1.38Å | 1.36Å | Aromatic |
CD2 | CE2 | sing | 1.38Å | 1.38Å | Aromatic |
C4 | H1 | sing | 1.09Å | 1.10Å | |
C4 | H2 | sing | 1.09Å | 1.10Å | |
C5 | H3 | sing | 1.09Å | 1.10Å | |
C5 | H4 | sing | 1.09Å | 1.10Å | |
C7 | H5 | sing | 1.09Å | 1.10Å | |
C8 | H6 | sing | 1.09Å | 1.10Å | |
C8 | H7 | sing | 1.09Å | 1.10Å | |
C1 | H9 | sing | 1.09Å | 1.10Å | |
C2 | H10 | sing | 1.09Å | 1.10Å | |
C2 | H11 | sing | 1.09Å | 1.10Å | |
C3 | H12 | sing | 1.09Å | 1.10Å | |
C3 | H13 | sing | 1.09Å | 1.10Å | |
CA | H14 | sing | 1.09Å | 1.10Å | |
CA | H15 | sing | 1.09Å | 1.10Å | |
CB | H16 | sing | 1.09Å | 1.10Å | |
CB | H17 | sing | 1.09Å | 1.10Å | |
CD1 | H18 | sing | 1.08Å | 1.08Å | |
CE1 | H19 | sing | 1.08Å | 1.08Å | |
CE2 | H20 | sing | 1.08Å | 1.08Å | |
CD2 | H21 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C7 | C8 | C6 | 116.2° | 108.3° |
C8 | C7 | C4 | 110.9° | 109.8° |
C8 | C7 | N | 113.5° | 110.1° |
C8 | C7 | H5 | 107.6° | 108.6° |
C7 | C8 | H6 | 107.7° | 109.7° |
C7 | C8 | H7 | 107.8° | 109.7° |
C8 | C6 | O | 119.0° | 121.2° |
C8 | C6 | C5 | 117.7° | 117.6° |
C6 | C8 | H6 | 107.8° | 109.7° |
C6 | C8 | H7 | 107.8° | 109.7° |
C7 | C4 | C3 | 111.6° | 109.4° |
C4 | C7 | N | 108.5° | 110.3° |
C7 | C4 | H1 | 108.9° | 109.5° |
C7 | C4 | H2 | 108.9° | 109.5° |
C4 | C7 | H5 | 107.6° | 109.0° |
C4 | C3 | C2 | 108.6° | 108.9° |
C3 | C4 | H1 | 108.9° | 109.4° |
C3 | C4 | H2 | 108.9° | 109.5° |
C4 | C3 | H12 | 109.7° | 109.6° |
C4 | C3 | H13 | 109.7° | 109.6° |
C7 | N | CA | 116.0° | 111.0° |
C7 | N | C1 | 111.3° | 112.8° |
N | C7 | H5 | 108.5° | 109.0° |
O | C6 | C5 | 122.4° | 121.3° |
C3 | C2 | C1 | 124.4° | 109.4° |
C3 | C2 | H10 | 105.6° | 109.5° |
C3 | C2 | H11 | 105.6° | 109.5° |
C2 | C3 | H12 | 109.7° | 109.6° |
C2 | C3 | H13 | 109.7° | 109.6° |
C6 | C5 | C1 | 112.6° | 108.4° |
C6 | C5 | H3 | 108.7° | 109.6° |
C6 | C5 | H4 | 108.7° | 109.7° |
CE1 | CD1 | CG | 122.9° | 120.1° |
CD1 | CE1 | CZ | 118.4° | 120.0° |
CE1 | CD1 | H18 | 118.5° | 119.9° |
CD1 | CE1 | H19 | 120.8° | 120.1° |
CD1 | CG | CB | 117.4° | 120.0° |
CD1 | CG | CD2 | 118.6° | 120.0° |
CG | CD1 | H18 | 118.5° | 120.0° |
CA | N | C1 | 105.4° | 111.0° |
N | CA | CB | 109.9° | 109.5° |
N | CA | H14 | 109.4° | 109.5° |
N | CA | H15 | 109.4° | 109.5° |
N | C1 | C2 | 104.8° | 110.3° |
N | C1 | C5 | 119.4° | 110.1° |
N | C1 | H9 | 111.5° | 109.0° |
CA | CB | CG | 109.0° | 109.4° |
CB | CA | H14 | 109.4° | 109.5° |
CB | CA | H15 | 109.4° | 109.4° |
CA | CB | H16 | 109.6° | 109.5° |
CA | CB | H17 | 109.6° | 109.4° |
CB | CG | CD2 | 124.0° | 120.0° |
CG | CB | H16 | 109.6° | 109.5° |
CG | CB | H17 | 109.6° | 109.5° |
CE1 | CZ | CL1 | 118.7° | 120.0° |
CE1 | CZ | CE2 | 119.0° | 120.0° |
CZ | CE1 | H19 | 120.8° | 120.0° |
C2 | C1 | C5 | 98.8° | 109.8° |
C2 | C1 | H9 | 110.6° | 108.5° |
C1 | C2 | H10 | 105.6° | 109.5° |
C1 | C2 | H11 | 105.6° | 109.5° |
C1 | C5 | H3 | 108.7° | 109.7° |
C1 | C5 | H4 | 108.7° | 109.7° |
C5 | C1 | H9 | 110.6° | 109.0° |
CG | CD2 | CE2 | 119.0° | 120.0° |
CG | CD2 | H21 | 120.5° | 119.9° |
CL1 | CZ | CE2 | 122.1° | 120.0° |
CZ | CE2 | CD2 | 122.0° | 120.0° |
CZ | CE2 | H20 | 119.0° | 120.0° |
CD2 | CE2 | H20 | 119.0° | 120.0° |
CE2 | CD2 | H21 | 120.5° | 120.0° |
H1 | C4 | H2 | 109.5° | 109.5° |
H3 | C5 | H4 | 109.5° | 109.7° |
H6 | C8 | H7 | 109.4° | 109.7° |
H10 | C2 | H11 | 109.5° | 109.4° |
H12 | C3 | H13 | 109.5° | 109.6° |
H14 | CA | H15 | 109.5° | 109.4° |
H16 | CB | H17 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C7 | C8 | C6 | H6 | 121.0° | 119.7° |
C7 | C8 | C6 | H7 | 121.0° | 119.7° |
C8 | C7 | C4 | N | 125.3° | 121.5° |
C8 | C7 | C4 | H5 | 117.5° | 118.8° |
C8 | C7 | C4 | C3 | 64.3° | 63.7° |
C8 | C7 | N | H5 | 119.6° | 119.0° |
C7 | C8 | C6 | O | 137.7° | 130.4° |
C7 | C8 | C6 | C5 | 31.5° | 49.6° |
C8 | C7 | N | CA | 67.9° | 62.3° |
C8 | C7 | N | C1 | 52.6° | 63.0° |
C8 | C7 | C4 | H1 | 175.4° | 176.3° |
C8 | C7 | C4 | H2 | 56.0° | 56.3° |
C7 | C8 | H6 | H7 | 116.9° | 120.6° |
C6 | C8 | C7 | C4 | 77.9° | 68.8° |
C6 | C8 | C7 | N | 44.6° | 52.9° |
C8 | C6 | O | C5 | 168.6° | 180.0° |
C8 | C6 | C5 | C1 | 26.5° | 49.6° |
C8 | C6 | C5 | H3 | 147.0° | 169.3° |
C8 | C6 | C5 | H4 | 93.9° | 70.1° |
C6 | C8 | C7 | H5 | 164.6° | 172.2° |
C6 | C8 | H6 | H7 | 117.0° | 120.5° |
C7 | C4 | C3 | H1 | 120.3° | 120.0° |
C7 | C4 | C3 | H2 | 120.3° | 120.0° |
C4 | C7 | N | H5 | 116.6° | 119.7° |
C7 | C4 | C3 | C2 | 42.2° | 58.4° |
C4 | C7 | N | CA | 168.4° | 176.4° |
C4 | C7 | N | C1 | 71.2° | 58.3° |
C7 | C4 | H1 | H2 | 119.0° | 120.1° |
C4 | C7 | C8 | H6 | 43.1° | 171.5° |
C4 | C7 | C8 | H7 | 161.1° | 50.9° |
C7 | C4 | C3 | H12 | 162.0° | 178.3° |
C7 | C4 | C3 | H13 | 77.7° | 61.4° |
C3 | C4 | C7 | N | 61.0° | 57.8° |
C4 | C3 | C2 | H12 | 119.9° | 119.9° |
C4 | C3 | C2 | H13 | 119.9° | 119.9° |
C4 | C3 | C2 | C1 | 37.3° | 58.4° |
C3 | C4 | H1 | H2 | 119.0° | 120.0° |
C3 | C4 | C7 | H5 | 178.2° | 177.5° |
C4 | C3 | C2 | H10 | 84.8° | 178.5° |
C4 | C3 | C2 | H11 | 159.3° | 61.6° |
C4 | C3 | H12 | H13 | 120.4° | 120.3° |
C7 | N | CA | C1 | 123.6° | 126.3° |
C7 | N | CA | CB | 73.1° | 170.0° |
C7 | N | C1 | C2 | 58.1° | 58.4° |
C7 | N | C1 | C5 | 51.3° | 63.0° |
N | C7 | C4 | H1 | 59.3° | 62.2° |
N | C7 | C4 | H2 | 178.7° | 177.8° |
N | C7 | C8 | H6 | 165.6° | 66.8° |
N | C7 | C8 | H7 | 76.4° | 172.6° |
C7 | N | C1 | H9 | 177.8° | 177.5° |
C7 | N | CA | H14 | 166.9° | 69.9° |
C7 | N | CA | H15 | 47.0° | 50.1° |
O | C6 | C5 | C1 | 142.2° | 130.4° |
O | C6 | C5 | H3 | 21.7° | 10.7° |
O | C6 | C5 | H4 | 97.3° | 109.9° |
O | C6 | C8 | H6 | 16.7° | 109.9° |
O | C6 | C8 | H7 | 101.3° | 10.6° |
C3 | C2 | C1 | N | 44.0° | 57.8° |
C3 | C2 | C1 | H10 | 122.0° | 120.0° |
C3 | C2 | C1 | H11 | 122.0° | 120.0° |
C3 | C2 | C1 | C5 | 79.7° | 63.7° |
C2 | C3 | C4 | H1 | 78.1° | 61.6° |
C2 | C3 | C4 | H2 | 162.5° | 178.4° |
C3 | C2 | C1 | H9 | 164.3° | 177.2° |
C3 | C2 | H10 | H11 | 113.3° | 120.0° |
C2 | C3 | H12 | H13 | 120.4° | 120.2° |
C6 | C5 | C1 | N | 37.4° | 52.9° |
C6 | C5 | C1 | C2 | 75.2° | 68.8° |
C6 | C5 | C1 | H3 | 120.5° | 119.6° |
C6 | C5 | C1 | H4 | 120.5° | 119.8° |
C6 | C5 | H3 | H4 | 118.6° | 120.5° |
C5 | C6 | C8 | H6 | 152.5° | 70.1° |
C5 | C6 | C8 | H7 | 89.5° | 169.4° |
C6 | C5 | C1 | H9 | 168.8° | 172.4° |
CE1 | CD1 | CG | H18 | 180.0° | 180.0° |
CE1 | CD1 | CG | CB | 179.7° | 180.0° |
CD1 | CE1 | CZ | H19 | 180.0° | 180.0° |
CE1 | CD1 | CG | CD2 | 0.2° | 0.3° |
CD1 | CE1 | CZ | CL1 | 178.0° | 180.0° |
CD1 | CE1 | CZ | CE2 | 2.6° | 0.1° |
CD1 | CG | CB | CA | 128.3° | 89.7° |
CD1 | CG | CB | CD2 | 179.5° | 179.8° |
CG | CD1 | CE1 | CZ | 1.2° | 0.0° |
CD1 | CG | CD2 | CE2 | 0.1° | 0.6° |
CD1 | CG | CB | H16 | 8.4° | 150.3° |
CD1 | CG | CB | H17 | 111.8° | 30.2° |
CG | CD1 | CE1 | H19 | 178.8° | 179.9° |
CD1 | CG | CD2 | H21 | 179.8° | 179.7° |
N | CA | CB | H14 | 120.1° | 120.1° |
N | CA | CB | H15 | 120.0° | 120.0° |
N | CA | CB | CG | 174.0° | 180.0° |
CA | N | C1 | C2 | 175.4° | 176.4° |
CA | N | C1 | C5 | 75.2° | 62.3° |
CA | N | C7 | H5 | 51.7° | 56.8° |
CA | N | C1 | H9 | 55.7° | 57.3° |
N | CA | H14 | H15 | 119.8° | 120.0° |
N | CA | CB | H16 | 66.0° | 60.0° |
N | CA | CB | H17 | 54.1° | 60.1° |
C1 | N | CA | CB | 163.3° | 63.8° |
N | C1 | C2 | C5 | 123.7° | 121.5° |
N | C1 | C2 | H9 | 120.3° | 119.4° |
N | C1 | C5 | H9 | 131.3° | 119.5° |
N | C1 | C5 | H3 | 157.9° | 172.5° |
N | C1 | C5 | H4 | 83.0° | 66.9° |
C1 | N | C7 | H5 | 172.2° | 178.0° |
N | C1 | C2 | H10 | 78.0° | 177.8° |
N | C1 | C2 | H11 | 166.0° | 62.2° |
C1 | N | CA | H14 | 43.3° | 56.3° |
C1 | N | CA | H15 | 76.6° | 176.3° |
CA | CB | CG | H16 | 119.9° | 120.0° |
CA | CB | CG | H17 | 119.9° | 119.9° |
CA | CB | CG | CD2 | 52.2° | 90.0° |
CB | CA | H14 | H15 | 119.8° | 119.9° |
CA | CB | H16 | H17 | 120.2° | 120.0° |
CB | CG | CD2 | CE2 | 179.6° | 179.7° |
CG | CB | CA | H14 | 54.0° | 59.9° |
CG | CB | CA | H15 | 65.9° | 60.0° |
CG | CB | H16 | H17 | 120.2° | 120.0° |
CB | CG | CD1 | H18 | 0.3° | 0.0° |
CB | CG | CD2 | H21 | 0.3° | 0.1° |
CE1 | CZ | CL1 | CE2 | 175.3° | 179.9° |
CE1 | CZ | CE2 | CD2 | 2.7° | 0.3° |
CZ | CE1 | CD1 | H18 | 178.8° | 180.0° |
CE1 | CZ | CE2 | H20 | 177.2° | 180.0° |
C2 | C1 | C5 | H9 | 116.0° | 118.8° |
C2 | C1 | C5 | H3 | 45.3° | 50.8° |
C2 | C1 | C5 | H4 | 164.3° | 171.4° |
C1 | C2 | H10 | H11 | 113.3° | 120.1° |
C1 | C2 | C3 | H12 | 157.1° | 178.3° |
C1 | C2 | C3 | H13 | 82.6° | 61.4° |
C1 | C5 | H3 | H4 | 118.6° | 120.6° |
C5 | C1 | C2 | H10 | 158.2° | 56.3° |
C5 | C1 | C2 | H11 | 42.3° | 176.3° |
CG | CD2 | CE2 | CZ | 1.3° | 0.6° |
CG | CD2 | CE2 | H21 | 180.0° | 179.8° |
CD2 | CG | CB | H16 | 172.1° | 30.0° |
CD2 | CG | CB | H17 | 67.7° | 150.0° |
CD2 | CG | CD1 | H18 | 179.8° | 179.8° |
CG | CD2 | CE2 | H20 | 178.6° | 179.7° |
CL1 | CZ | CE2 | CD2 | 178.0° | 179.7° |
CL1 | CZ | CE1 | H19 | 2.0° | 0.0° |
CL1 | CZ | CE2 | H20 | 2.0° | 0.0° |
CZ | CE2 | CD2 | H20 | 180.0° | 179.7° |
CE2 | CZ | CE1 | H19 | 177.4° | 179.9° |
CZ | CE2 | CD2 | H21 | 178.7° | 179.7° |
H1 | C4 | C7 | H5 | 57.9° | 57.5° |
H1 | C4 | C3 | H12 | 41.7° | 58.3° |
H1 | C4 | C3 | H13 | 162.0° | 178.6° |
H2 | C4 | C7 | H5 | 61.5° | 62.5° |
H2 | C4 | C3 | H12 | 77.6° | 61.7° |
H2 | C4 | C3 | H13 | 42.6° | 58.6° |
H3 | C5 | C1 | H9 | 70.7° | 68.0° |
H4 | C5 | C1 | H9 | 48.3° | 52.6° |
H5 | C7 | C8 | H6 | 74.4° | 52.5° |
H5 | C7 | C8 | H7 | 43.6° | 68.1° |
H9 | C1 | C2 | H10 | 42.2° | 62.8° |
H9 | C1 | C2 | H11 | 73.7° | 57.3° |
H10 | C2 | C3 | H12 | 35.1° | 61.6° |
H10 | C2 | C3 | H13 | 155.3° | 58.6° |
H11 | C2 | C3 | H12 | 80.9° | 58.3° |
H11 | C2 | C3 | H13 | 39.4° | 178.6° |
H14 | CA | CB | H16 | 173.9° | 179.9° |
H14 | CA | CB | H17 | 66.0° | 60.0° |
H15 | CA | CB | H16 | 54.0° | 60.0° |
H15 | CA | CB | H17 | 174.1° | 180.0° |
H18 | CD1 | CE1 | H19 | 1.1° | 0.0° |
H20 | CE2 | CD2 | H21 | 1.3° | 0.0° |