GNG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5'	C5'	sing	1.43Å	1.43Å
O5'	H5'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.52Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C3'	sing	1.55Å	1.53Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.43Å
C1'	N9	sing	1.46Å	1.46Å
C1'	C2'	sing	1.54Å	1.52Å
C1'	H1'	sing	1.09Å	1.12Å
N9	C8	sing	1.36Å	1.37Å	Aromatic
N9	C4	sing	1.36Å	1.38Å	Aromatic
C8	N7	doub	1.30Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.35Å	1.38Å	Aromatic
C5	C4	doub	1.39Å	1.39Å	Aromatic
C5	C6	sing	1.47Å	1.42Å
C4	N3	sing	1.37Å	1.35Å
N3	C2	sing	1.36Å	1.33Å
N3	HN3	sing	0.97Å	1.02Å
C2	N1	doub	1.32Å	1.38Å
C2	N2	sing	1.37Å	1.34Å
N1	C6	sing	1.34Å	1.39Å
C6	O6	doub	1.22Å	1.24Å
N2	HN21	sing	0.97Å	1.02Å
N2	HN22	sing	0.97Å	1.02Å
C2'	C3'	sing	1.55Å	1.52Å
C2'	H2'1	sing	1.09Å	1.12Å
C2'	H2'2	sing	1.09Å	1.11Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.11Å
O3'	H1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5'	O5'	H5'	111.0°	106.8°
O5'	C5'	C4'	111.0°	109.4°
O5'	C5'	H5'1	111.7°	109.4°
O5'	C5'	H5'2	111.7°	109.5°
C4'	C5'	H5'1	111.6°	109.5°
C4'	C5'	H5'2	111.6°	109.4°
C5'	C4'	O4'	110.8°	110.8°
C5'	C4'	C3'	112.9°	110.6°
C5'	C4'	H4'	105.0°	110.6°
H5'1	C5'	H5'2	98.8°	109.6°
O4'	C4'	C3'	105.6°	103.6°
O4'	C4'	H4'	112.4°	110.5°
C4'	O4'	C1'	111.2°	106.9°
C3'	C4'	H4'	110.3°	110.5°
C4'	C3'	C2'	104.0°	102.1°
C4'	C3'	O3'	112.2°	111.0°
C4'	C3'	H3'	111.5°	110.9°
O4'	C1'	N9	107.7°	109.9°
O4'	C1'	C2'	106.0°	107.4°
O4'	C1'	H1'	113.2°	109.9°
N9	C1'	C2'	110.3°	109.9°
N9	C1'	H1'	109.0°	109.8°
C1'	N9	C8	125.8°	126.2°
C1'	N9	C4	127.8°	126.3°
C2'	C1'	H1'	110.6°	109.9°
C1'	C2'	C3'	104.0°	104.2°
C1'	C2'	H2'1	114.3°	110.5°
C1'	C2'	H2'2	114.3°	110.5°
C8	N9	C4	106.4°	107.5°
N9	C8	N7	113.3°	109.5°
N9	C8	H8	125.6°	125.3°
N9	C4	C5	104.8°	106.4°
N9	C4	N3	126.6°	134.7°
N7	C8	H8	121.1°	125.2°
C8	N7	C5	104.4°	109.1°
N7	C5	C4	111.1°	107.4°
N7	C5	C6	129.8°	134.5°
C4	C5	C6	119.1°	118.2°
C5	C4	N3	128.5°	118.9°
C5	C6	N1	111.7°	118.6°
C5	C6	O6	128.2°	120.7°
C4	N3	C2	111.7°	120.5°
C4	N3	HN3	111.4°	119.8°
C2	N3	HN3	111.3°	119.7°
N3	C2	N1	124.0°	122.5°
N3	C2	N2	120.3°	118.7°
N1	C2	N2	115.7°	118.8°
C2	N1	C6	124.9°	121.4°
C2	N2	HN21	120.4°	120.0°
C2	N2	HN22	108.4°	120.0°
N1	C6	O6	120.1°	120.7°
HN21	N2	HN22	108.3°	120.0°
C3'	C2'	H2'1	114.3°	110.5°
C3'	C2'	H2'2	114.3°	110.4°
C2'	C3'	O3'	109.8°	110.9°
C2'	C3'	H3'	113.8°	110.9°
H2'1	C2'	H2'2	96.2°	110.6°
O3'	C3'	H3'	105.7°	110.8°
C3'	O3'	H1	112.2°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	C5'	C4'	H5'1	125.3°	119.9°
O5'	C5'	C4'	H5'2	125.3°	119.9°
O5'	C5'	H5'1	H5'2	117.6°	120.0°
O5'	C5'	C4'	O4'	60.4°	65.8°
O5'	C5'	C4'	C3'	178.6°	180.0°
O5'	C5'	C4'	H4'	61.3°	57.2°
H5'	O5'	C5'	C4'	180.0°	180.0°
H5'	O5'	C5'	H5'1	54.8°	60.1°
H5'	O5'	C5'	H5'2	54.8°	60.0°
C4'	C5'	H5'1	H5'2	117.5°	120.0°
C5'	C4'	O4'	C3'	122.6°	118.6°
C5'	C4'	O4'	H4'	117.2°	123.0°
C5'	C4'	C3'	H4'	117.1°	122.8°
C5'	C4'	O4'	C1'	115.9°	158.5°
C5'	C4'	C3'	C2'	98.1°	155.7°
C5'	C4'	C3'	O3'	143.3°	86.1°
C5'	C4'	C3'	H3'	24.9°	37.5°
H5'1	C5'	C4'	O4'	64.9°	174.3°
H5'1	C5'	C4'	C3'	53.3°	60.0°
H5'1	C5'	C4'	H4'	173.5°	62.7°
H5'2	C5'	C4'	O4'	174.4°	54.2°
H5'2	C5'	C4'	C3'	56.2°	60.1°
H5'2	C5'	C4'	H4'	64.0°	177.1°
O4'	C4'	C3'	H4'	121.7°	118.4°
C4'	O4'	C1'	N9	130.6°	145.8°
C4'	O4'	C1'	C2'	12.6°	26.3°
C4'	O4'	C1'	H1'	108.8°	93.2°
O4'	C4'	C3'	C2'	23.2°	36.9°
O4'	C4'	C3'	O3'	95.5°	155.1°
O4'	C4'	C3'	H3'	146.1°	81.3°
C3'	C4'	O4'	C1'	6.7°	39.8°
C4'	C3'	C2'	C1'	30.3°	20.9°
C4'	C3'	C2'	O3'	120.3°	118.3°
C4'	C3'	C2'	H3'	121.4°	118.2°
C4'	C3'	C2'	H2'1	155.5°	139.6°
C4'	C3'	C2'	H2'2	95.0°	97.8°
C4'	C3'	O3'	H3'	121.7°	123.6°
C4'	C3'	O3'	H1	180.0°	174.2°
H4'	C4'	O4'	C1'	127.0°	78.6°
H4'	C4'	C3'	C2'	144.8°	81.5°
H4'	C4'	C3'	O3'	26.2°	36.7°
H4'	C4'	C3'	H3'	92.2°	160.3°
O4'	C1'	N9	C2'	115.2°	118.0°
O4'	C1'	N9	H1'	123.1°	121.0°
O4'	C1'	C2'	H1'	123.0°	119.5°
O4'	C1'	N9	C8	35.3°	28.2°
O4'	C1'	N9	C4	147.3°	151.7°
O4'	C1'	C2'	C3'	26.7°	2.0°
O4'	C1'	C2'	H2'1	152.0°	116.7°
O4'	C1'	C2'	H2'2	98.6°	120.6°
N9	C1'	C2'	H1'	120.7°	120.9°
C1'	N9	C8	C4	177.9°	179.9°
C1'	N9	C8	N7	176.2°	179.9°
C1'	N9	C8	H8	3.7°	0.1°
C1'	N9	C4	C5	176.1°	179.9°
C1'	N9	C4	N3	2.7°	0.3°
N9	C1'	C2'	C3'	143.1°	121.5°
N9	C1'	C2'	H2'1	91.7°	2.8°
N9	C1'	C2'	H2'2	17.8°	119.9°
C2'	C1'	N9	C8	79.9°	89.8°
C2'	C1'	N9	C4	97.5°	90.3°
C1'	C2'	C3'	H2'1	125.2°	118.7°
C1'	C2'	C3'	H2'2	125.3°	118.7°
C1'	C2'	H2'1	H2'2	120.2°	122.7°
C1'	C2'	C3'	O3'	90.0°	139.2°
C1'	C2'	C3'	H3'	151.7°	97.3°
H1'	C1'	N9	C8	158.4°	149.2°
H1'	C1'	N9	C4	24.2°	30.7°
H1'	C1'	C2'	C3'	96.3°	117.6°
H1'	C1'	C2'	H2'1	29.0°	123.8°
H1'	C1'	C2'	H2'2	138.4°	1.0°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.7°	0.0°
C8	N9	C4	C5	1.8°	0.0°
C8	N9	C4	N3	179.5°	179.7°
C4	N9	C8	N7	1.6°	0.0°
C4	N9	C8	H8	178.4°	180.0°
N9	C4	C5	N7	1.4°	0.0°
N9	C4	C5	N3	178.7°	179.7°
N9	C4	C5	C6	178.1°	179.9°
N9	C4	N3	C2	178.3°	179.8°
N9	C4	N3	HN3	56.4°	0.0°
C8	N7	C5	C4	0.5°	0.0°
C8	N7	C5	C6	179.0°	179.9°
H8	C8	N7	C5	179.3°	179.9°
N7	C5	C4	C6	179.5°	179.9°
N7	C5	C4	N3	179.9°	179.7°
N7	C5	C6	N1	179.6°	179.9°
N7	C5	C6	O6	1.4°	0.1°
C5	C4	N3	C2	0.1°	0.6°
C5	C4	N3	HN3	125.1°	179.6°
C4	C5	C6	N1	1.0°	0.1°
C4	C5	C6	O6	178.0°	180.0°
C6	C5	C4	N3	0.6°	0.4°
C5	C6	N1	C2	1.0°	0.0°
C5	C6	N1	O6	179.1°	179.9°
C4	N3	C2	HN3	125.3°	179.8°
C4	N3	C2	N1	0.1°	0.5°
C4	N3	C2	N2	179.6°	179.7°
N3	C2	N1	N2	179.7°	179.8°
N3	C2	N1	C6	0.6°	0.2°
N3	C2	N2	HN21	180.0°	179.8°
N3	C2	N2	HN22	54.7°	0.6°
HN3	N3	C2	N1	125.2°	179.7°
HN3	N3	C2	N2	55.1°	0.1°
C2	N1	C6	O6	178.1°	179.9°
N1	C2	N2	HN21	0.3°	0.0°
N1	C2	N2	HN22	125.6°	179.6°
N2	C2	N1	C6	179.1°	180.0°
C2	N2	HN21	HN22	125.3°	179.6°
C3'	C2'	H2'1	H2'2	120.2°	122.5°
C2'	C3'	O3'	H3'	123.1°	123.6°
C2'	C3'	O3'	H1	64.8°	61.5°
H2'1	C2'	C3'	O3'	35.2°	102.1°
H2'1	C2'	C3'	H3'	83.0°	21.4°
H2'2	C2'	C3'	O3'	144.7°	20.5°
H2'2	C2'	C3'	H3'	26.4°	144.0°
H3'	C3'	O3'	H1	58.3°	62.1°

Definition date:	2003-02-13
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1NH3