GNE
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | sing | 1.62Å | 1.48Å | |
| P | OP2 | doub | 1.50Å | 1.47Å | |
| P | OP3 | sing | 1.62Å | 56.78Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| OP1 | HO1 | sing | 0.98Å | 0.95Å | |
| OP3 | HO3 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.43Å | |
| C5' | C4' | sing | 1.52Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.52Å | 1.53Å | |
| C4' | H4' | sing | 1.10Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.51Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.52Å | 1.53Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| C2' | H2'' | sing | 1.09Å | 1.11Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.10Å | 1.11Å | |
| N9 | C8 | sing | 1.37Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.36Å | 1.33Å | Aromatic |
| C8 | N7 | doub | 1.32Å | 1.33Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.37Å | 1.33Å | Aromatic |
| C5 | C6 | sing | 1.44Å | 1.39Å | |
| C5 | C4 | doub | 1.38Å | 1.39Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.40Å | 1.39Å | |
| N1 | C2 | sing | 1.43Å | 1.40Å | |
| N1 | C11 | sing | 1.38Å | 1.34Å | |
| C2 | N2 | sing | 1.38Å | 1.34Å | |
| C2 | N3 | doub | 1.30Å | 1.34Å | |
| N2 | CM2 | sing | 1.37Å | 1.47Å | |
| N2 | H2 | sing | 1.01Å | 1.02Å | |
| CM2 | C11 | doub | 1.34Å | 1.52Å | |
| CM2 | HM2 | sing | 1.08Å | 1.10Å | |
| N3 | C4 | sing | 1.36Å | 1.34Å | |
| C11 | H11 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 118.9° | 115.3° |
| OP1 | P | OP3 | 110.1° | 103.3° |
| OP1 | P | O5' | 108.2° | 103.7° |
| P | OP1 | HO1 | 118.9° | 118.9° |
| OP2 | P | OP3 | 130.9° | 115.0° |
| OP2 | P | O5' | 109.8° | 115.0° |
| OP3 | P | O5' | 47.4° | 102.9° |
| P | OP3 | HO3 | 110.1° | 118.9° |
| P | O5' | C5' | 122.1° | 118.5° |
| O5' | C5' | C4' | 113.4° | 108.7° |
| O5' | C5' | H5' | 110.7° | 109.2° |
| O5' | C5' | H5'' | 110.7° | 109.2° |
| C4' | C5' | H5' | 110.8° | 110.1° |
| C4' | C5' | H5'' | 110.8° | 110.1° |
| C5' | C4' | O4' | 113.5° | 108.0° |
| C5' | C4' | C3' | 115.1° | 112.7° |
| C5' | C4' | H4' | 107.6° | 109.4° |
| H5' | C5' | H5'' | 99.6° | 109.6° |
| O4' | C4' | C3' | 105.1° | 106.8° |
| O4' | C4' | H4' | 107.6° | 107.7° |
| C4' | O4' | C1' | 103.9° | 108.7° |
| C3' | C4' | H4' | 107.6° | 112.0° |
| C4' | C3' | O3' | 109.1° | 109.6° |
| C4' | C3' | C2' | 102.4° | 103.2° |
| C4' | C3' | H3' | 112.7° | 114.0° |
| O4' | C1' | C2' | 100.8° | 106.7° |
| O4' | C1' | N9 | 115.1° | 110.0° |
| O4' | C1' | H1' | 108.7° | 108.1° |
| O3' | C3' | C2' | 106.5° | 108.4° |
| O3' | C3' | H3' | 112.8° | 107.8° |
| C3' | O3' | HA | 109.1° | 106.5° |
| C2' | C3' | H3' | 112.7° | 113.7° |
| C3' | C2' | C1' | 94.0° | 101.6° |
| C3' | C2' | H2' | 118.3° | 110.0° |
| C3' | C2' | H2'' | 118.3° | 114.2° |
| C1' | C2' | H2' | 118.3° | 110.5° |
| C1' | C2' | H2'' | 118.3° | 111.7° |
| C2' | C1' | N9 | 114.5° | 114.3° |
| C2' | C1' | H1' | 108.7° | 111.7° |
| H2' | C2' | H2'' | 91.9° | 108.7° |
| N9 | C1' | H1' | 108.7° | 105.9° |
| C1' | N9 | C8 | 125.9° | 125.9° |
| C1' | N9 | C4 | 125.4° | 127.1° |
| C8 | N9 | C4 | 108.7° | 107.0° |
| N9 | C8 | N7 | 109.2° | 112.4° |
| N9 | C8 | H8 | 125.4° | 122.1° |
| N9 | C4 | C5 | 106.3° | 104.7° |
| N9 | C4 | N3 | 132.9° | 125.8° |
| N7 | C8 | H8 | 125.4° | 125.5° |
| C8 | N7 | C5 | 107.8° | 104.0° |
| N7 | C5 | C6 | 133.1° | 128.0° |
| N7 | C5 | C4 | 108.1° | 111.9° |
| C6 | C5 | C4 | 118.9° | 120.1° |
| C5 | C6 | O6 | 119.5° | 123.5° |
| C5 | C6 | N1 | 119.3° | 109.3° |
| C5 | C4 | N3 | 120.8° | 129.6° |
| O6 | C6 | N1 | 121.1° | 127.1° |
| C6 | N1 | C2 | 119.5° | 125.5° |
| C6 | N1 | C11 | 130.5° | 126.8° |
| C2 | N1 | C11 | 110.0° | 107.8° |
| N1 | C2 | N2 | 110.5° | 105.1° |
| N1 | C2 | N3 | 119.3° | 124.1° |
| N1 | C11 | CM2 | 107.7° | 108.4° |
| N1 | C11 | H11 | 126.1° | 122.2° |
| N2 | C2 | N3 | 130.2° | 130.7° |
| C2 | N2 | CM2 | 109.3° | 109.4° |
| C2 | N2 | H2 | 125.3° | 127.7° |
| C2 | N3 | C4 | 122.1° | 111.4° |
| CM2 | N2 | H2 | 125.3° | 122.9° |
| N2 | CM2 | C11 | 102.4° | 109.3° |
| N2 | CM2 | HM2 | 128.8° | 120.8° |
| C11 | CM2 | HM2 | 128.8° | 129.9° |
| CM2 | C11 | H11 | 126.1° | 129.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 175.5° | 120.1° |
| OP1 | P | OP2 | O5' | 125.3° | 120.6° |
| OP1 | P | OP3 | O5' | 96.6° | 107.7° |
| OP1 | P | OP3 | HO3 | 180.0° | 78.5° |
| OP1 | P | O5' | C5' | 143.9° | 53.2° |
| OP2 | P | OP3 | O5' | 79.3° | 125.8° |
| OP2 | P | OP1 | HO1 | 180.0° | 48.8° |
| OP2 | P | OP3 | HO3 | 4.2° | 48.0° |
| OP2 | P | O5' | C5' | 12.6° | 180.0° |
| OP3 | P | OP1 | HO1 | 3.6° | 77.5° |
| OP3 | P | O5' | C5' | 115.2° | 54.2° |
| O5' | P | OP1 | HO1 | 53.9° | 175.4° |
| O5' | P | OP3 | HO3 | 83.4° | 173.9° |
| P | O5' | C5' | C4' | 154.2° | 180.0° |
| P | O5' | C5' | H5' | 29.0° | 59.9° |
| P | O5' | C5' | H5'' | 80.5° | 59.9° |
| O5' | C5' | C4' | H5' | 125.2° | 119.6° |
| O5' | C5' | C4' | H5'' | 125.2° | 119.5° |
| O5' | C5' | H5' | H5'' | 116.6° | 119.6° |
| O5' | C5' | C4' | O4' | 69.3° | 61.8° |
| O5' | C5' | C4' | C3' | 51.9° | 179.5° |
| O5' | C5' | C4' | H4' | 171.8° | 55.2° |
| C4' | C5' | H5' | H5'' | 116.7° | 121.2° |
| C5' | C4' | O4' | C3' | 126.7° | 121.5° |
| C5' | C4' | O4' | H4' | 118.9° | 118.0° |
| C5' | C4' | C3' | H4' | 119.9° | 123.8° |
| C5' | C4' | O4' | C1' | 144.6° | 116.0° |
| C5' | C4' | C3' | O3' | 140.2° | 152.1° |
| C5' | C4' | C3' | C2' | 107.2° | 92.6° |
| C5' | C4' | C3' | H3' | 14.2° | 31.2° |
| H5' | C5' | C4' | O4' | 56.0° | 57.8° |
| H5' | C5' | C4' | C3' | 177.2° | 60.0° |
| H5' | C5' | C4' | H4' | 62.9° | 174.7° |
| H5'' | C5' | C4' | O4' | 165.5° | 178.7° |
| H5'' | C5' | C4' | C3' | 73.3° | 60.9° |
| H5'' | C5' | C4' | H4' | 46.6° | 64.3° |
| O4' | C4' | C3' | H4' | 114.4° | 117.7° |
| O4' | C4' | C3' | O3' | 94.1° | 89.4° |
| O4' | C4' | C3' | C2' | 18.4° | 25.9° |
| O4' | C4' | C3' | H3' | 139.8° | 149.7° |
| C4' | O4' | C1' | C2' | 48.0° | 17.3° |
| C4' | O4' | C1' | N9 | 171.8° | 141.8° |
| C4' | O4' | C1' | H1' | 66.1° | 103.1° |
| C3' | C4' | O4' | C1' | 17.9° | 5.5° |
| C4' | C3' | O3' | C2' | 109.8° | 111.9° |
| C4' | C3' | O3' | H3' | 126.1° | 124.6° |
| C4' | C3' | C2' | H3' | 121.4° | 123.9° |
| C4' | C3' | O3' | HA | 180.0° | 43.1° |
| C4' | C3' | C2' | C1' | 44.2° | 34.8° |
| C4' | C3' | C2' | H2' | 169.5° | 82.2° |
| C4' | C3' | C2' | H2'' | 81.1° | 155.2° |
| H4' | C4' | O4' | C1' | 96.5° | 126.0° |
| H4' | C4' | C3' | O3' | 20.4° | 28.3° |
| H4' | C4' | C3' | C2' | 132.9° | 143.6° |
| H4' | C4' | C3' | H3' | 105.7° | 92.6° |
| O4' | C1' | C2' | C3' | 56.8° | 32.7° |
| O4' | C1' | C2' | N9 | 124.2° | 121.8° |
| O4' | C1' | C2' | H1' | 114.1° | 117.9° |
| O4' | C1' | C2' | H2' | 177.9° | 84.0° |
| O4' | C1' | C2' | H2'' | 68.4° | 154.9° |
| O4' | C1' | N9 | H1' | 122.1° | 116.5° |
| O4' | C1' | N9 | C8 | 78.2° | 33.5° |
| O4' | C1' | N9 | C4 | 102.3° | 146.6° |
| O3' | C3' | C2' | H3' | 124.1° | 119.9° |
| O3' | C3' | C2' | C1' | 70.2° | 81.3° |
| O3' | C3' | C2' | H2' | 55.0° | 161.6° |
| O3' | C3' | C2' | H2'' | 164.5° | 39.1° |
| C2' | C3' | O3' | HA | 70.2° | 68.8° |
| C3' | C2' | C1' | H2' | 125.3° | 116.7° |
| C3' | C2' | C1' | H2'' | 125.2° | 122.2° |
| C3' | C2' | H2' | H2'' | 123.8° | 125.7° |
| C3' | C2' | C1' | N9 | 179.0° | 154.5° |
| C3' | C2' | C1' | H1' | 57.3° | 85.2° |
| H3' | C3' | O3' | HA | 53.9° | 167.7° |
| H3' | C3' | C2' | C1' | 165.6° | 158.8° |
| H3' | C3' | C2' | H2' | 69.1° | 41.7° |
| H3' | C3' | C2' | H2'' | 40.3° | 80.8° |
| C1' | C2' | H2' | H2'' | 123.9° | 122.9° |
| C2' | C1' | N9 | H1' | 121.7° | 123.5° |
| C2' | C1' | N9 | C8 | 38.0° | 86.6° |
| C2' | C1' | N9 | C4 | 141.5° | 93.4° |
| H2' | C2' | C1' | N9 | 53.7° | 37.8° |
| H2' | C2' | C1' | H1' | 68.0° | 158.1° |
| H2'' | C2' | C1' | N9 | 55.8° | 83.3° |
| H2'' | C2' | C1' | H1' | 177.5° | 37.0° |
| C1' | N9 | C8 | C4 | 179.6° | 179.9° |
| C1' | N9 | C8 | N7 | 179.9° | 180.0° |
| C1' | N9 | C8 | H8 | 0.1° | 0.1° |
| C1' | N9 | C4 | C5 | 179.9° | 180.0° |
| C1' | N9 | C4 | N3 | 0.3° | 0.0° |
| H1' | C1' | N9 | C8 | 159.7° | 150.0° |
| H1' | C1' | N9 | C4 | 19.8° | 30.1° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| C8 | N9 | C4 | C5 | 0.5° | 0.0° |
| C8 | N9 | C4 | N3 | 179.9° | 179.9° |
| C4 | N9 | C8 | N7 | 0.3° | 0.0° |
| C4 | N9 | C8 | H8 | 179.7° | 179.9° |
| N9 | C4 | C5 | N7 | 0.5° | 0.0° |
| N9 | C4 | C5 | C6 | 179.5° | 179.9° |
| N9 | C4 | C5 | N3 | 179.7° | 179.9° |
| N9 | C4 | N3 | C2 | 179.6° | 179.9° |
| C8 | N7 | C5 | C6 | 179.7° | 179.9° |
| C8 | N7 | C5 | C4 | 0.3° | 0.0° |
| H8 | C8 | N7 | C5 | 179.9° | 179.9° |
| N7 | C5 | C6 | C4 | 180.0° | 179.9° |
| N7 | C5 | C6 | O6 | 1.8° | 0.0° |
| N7 | C5 | C6 | N1 | 179.8° | 180.0° |
| N7 | C5 | C4 | N3 | 179.8° | 179.9° |
| C5 | C6 | O6 | N1 | 178.4° | 179.9° |
| C5 | C6 | N1 | C2 | 0.0° | 0.0° |
| C5 | C6 | N1 | C11 | 178.9° | 179.9° |
| C6 | C5 | C4 | N3 | 0.1° | 0.0° |
| C4 | C5 | C6 | O6 | 178.2° | 179.9° |
| C4 | C5 | C6 | N1 | 0.2° | 0.0° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| O6 | C6 | N1 | C2 | 178.4° | 179.9° |
| O6 | C6 | N1 | C11 | 2.7° | 0.0° |
| C6 | N1 | C2 | C11 | 179.1° | 179.9° |
| C6 | N1 | C2 | N2 | 178.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.2° | 0.1° |
| C6 | N1 | C11 | CM2 | 179.9° | 180.0° |
| C6 | N1 | C11 | H11 | 0.1° | 0.1° |
| N1 | C2 | N2 | N3 | 178.7° | 180.0° |
| N1 | C2 | N2 | CM2 | 1.7° | 0.1° |
| N1 | C2 | N2 | H2 | 178.4° | 179.6° |
| C2 | N1 | C11 | CM2 | 0.9° | 0.1° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| C2 | N1 | C11 | H11 | 179.1° | 180.0° |
| C11 | N1 | C2 | N2 | 0.5° | 0.1° |
| C11 | N1 | C2 | N3 | 179.4° | 179.9° |
| N1 | C11 | CM2 | N2 | 1.7° | 0.0° |
| N1 | C11 | CM2 | H11 | 180.0° | 179.9° |
| N1 | C11 | CM2 | HM2 | 178.3° | 180.0° |
| C2 | N2 | CM2 | H2 | 180.0° | 179.6° |
| C2 | N2 | CM2 | C11 | 2.1° | 0.0° |
| C2 | N2 | CM2 | HM2 | 178.0° | 180.0° |
| N2 | C2 | N3 | C4 | 178.4° | 180.0° |
| N3 | C2 | N2 | CM2 | 179.6° | 180.0° |
| N3 | C2 | N2 | H2 | 0.4° | 0.4° |
| N2 | CM2 | C11 | HM2 | 180.0° | 180.0° |
| N2 | CM2 | C11 | H11 | 178.3° | 180.0° |
| H2 | N2 | CM2 | C11 | 178.0° | 179.6° |
| H2 | N2 | CM2 | HM2 | 2.0° | 0.4° |
| HM2 | CM2 | C11 | H11 | 1.7° | 0.1° |
