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Summary Geometry PCM/PTM Related PDB entries

GNC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N	sing	1.47Å	1.47Å
NE2	CD	sing	1.35Å	1.44Å
OE1	CD	doub	1.21Å	1.23Å
O	C	doub	1.21Å	1.24Å
CG	CB	sing	1.53Å	1.53Å
CG	CD	sing	1.51Å	1.49Å
CB	CA	sing	1.53Å	1.51Å
C	CA	sing	1.51Å	1.52Å
C	OXT	sing	1.34Å	1.48Å
CA	N	sing	1.47Å	1.48Å
C1	HC1	sing	1.09Å	1.10Å
C1	HC2	sing	1.09Å	1.10Å
C1	HC3	sing	1.09Å	1.10Å
NE2	HE21	sing	0.97Å	1.00Å
NE2	HE22	sing	0.97Å	1.00Å
CG	HG2	sing	1.09Å	1.10Å
CG	HG3	sing	1.09Å	1.10Å
CB	HB2	sing	1.09Å	1.10Å
CB	HB3	sing	1.09Å	1.10Å
CA	HA	sing	1.09Å	1.10Å
OXT	HXT	sing	0.97Å	0.95Å
N	H	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N	CA	118.8°	111.0°
N	C1	HC1	109.5°	109.5°
N	C1	HC2	109.5°	109.5°
N	C1	HC3	109.5°	109.4°
C1	N	H	107.1°	110.9°
NE2	CD	OE1	121.1°	120.0°
NE2	CD	CG	120.2°	120.0°
CD	NE2	HE21	120.0°	120.0°
CD	NE2	HE22	120.0°	120.0°
OE1	CD	CG	118.7°	120.0°
O	C	CA	122.6°	120.0°
O	C	OXT	121.7°	120.0°
CB	CG	CD	113.6°	109.5°
CG	CB	CA	118.2°	109.5°
CB	CG	HG2	108.4°	109.5°
CB	CG	HG3	108.4°	109.4°
CG	CB	HB2	107.3°	109.4°
CG	CB	HB3	107.3°	109.5°
CD	CG	HG2	108.4°	109.5°
CD	CG	HG3	108.4°	109.4°
CB	CA	C	112.0°	109.5°
CB	CA	N	113.8°	109.5°
CA	CB	HB2	107.2°	109.5°
CA	CB	HB3	107.2°	109.5°
CB	CA	HA	107.6°	109.5°
CA	C	OXT	115.8°	120.0°
C	CA	N	107.7°	109.5°
C	CA	HA	107.5°	109.5°
C	OXT	HXT	109.5°	117.0°
N	CA	HA	108.0°	109.5°
CA	N	H	107.1°	111.0°
HC1	C1	HC2	109.5°	109.5°
HC1	C1	HC3	109.5°	109.5°
HC2	C1	HC3	109.5°	109.5°
HE21	NE2	HE22	120.0°	120.1°
HG2	CG	HG3	109.5°	109.5°
HB2	CB	HB3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N	CA	CB	84.7°	155.0°
C1	N	CA	C	40.0°	85.0°
C1	N	CA	H	121.4°	123.9°
N	C1	HC1	HC2	120.0°	120.0°
N	C1	HC1	HC3	120.0°	119.9°
N	C1	HC2	HC3	120.0°	119.9°
C1	N	CA	HA	155.9°	35.0°
NE2	CD	OE1	CG	179.1°	180.0°
NE2	CD	CG	CB	99.5°	180.0°
CD	NE2	HE21	HE22	180.0°	179.9°
NE2	CD	CG	HG2	139.9°	60.0°
NE2	CD	CG	HG3	21.2°	60.0°
OE1	CD	CG	CB	79.6°	0.1°
OE1	CD	NE2	HE21	0.0°	0.0°
OE1	CD	NE2	HE22	180.0°	179.9°
OE1	CD	CG	HG2	41.0°	120.0°
OE1	CD	CG	HG3	159.8°	120.0°
O	C	CA	CB	18.4°	120.0°
O	C	CA	OXT	178.7°	180.0°
O	C	CA	N	107.4°	0.0°
O	C	CA	HA	136.4°	120.0°
O	C	OXT	HXT	0.0°	0.0°
CB	CG	CD	HG2	120.6°	120.0°
CB	CG	CD	HG3	120.6°	119.9°
CG	CB	CA	HB2	121.2°	120.0°
CG	CB	CA	HB3	121.2°	120.0°
CG	CB	CA	C	178.2°	175.0°
CG	CB	CA	N	59.4°	65.0°
CB	CG	HG2	HG3	118.1°	120.0°
CG	CB	HB2	HB3	116.1°	120.0°
CG	CB	CA	HA	60.2°	55.0°
CD	CG	CB	CA	174.7°	180.0°
CG	CD	NE2	HE21	179.0°	179.9°
CG	CD	NE2	HE22	1.0°	0.0°
CD	CG	HG2	HG3	118.1°	120.0°
CD	CG	CB	HB2	64.1°	60.1°
CD	CG	CB	HB3	53.5°	60.0°
CB	CA	C	N	125.8°	120.0°
CB	CA	C	HA	118.0°	120.0°
CB	CA	C	OXT	160.3°	60.0°
CB	CA	N	HA	119.4°	120.0°
CA	CB	CG	HG2	64.7°	60.0°
CA	CB	CG	HG3	54.1°	60.0°
CA	CB	HB2	HB3	116.0°	120.0°
CB	CA	N	H	153.9°	31.1°
C	CA	N	HA	115.9°	120.0°
C	CA	CB	HB2	56.9°	55.0°
C	CA	CB	HB3	60.6°	65.0°
CA	C	OXT	HXT	178.7°	180.0°
C	CA	N	H	81.3°	151.1°
OXT	C	CA	N	73.8°	180.0°
OXT	C	CA	HA	42.3°	60.0°
CA	N	C1	HC1	180.0°	180.0°
CA	N	C1	HC2	60.0°	60.0°
CA	N	C1	HC3	60.0°	60.0°
N	CA	CB	HB2	179.4°	175.0°
N	CA	CB	HB3	61.9°	55.0°
HC1	C1	HC2	HC3	120.0°	120.1°
HC1	C1	N	H	58.7°	56.0°
HC2	C1	N	H	61.3°	64.0°
HC3	C1	N	H	178.7°	176.0°
HG2	CG	CB	HB2	56.6°	60.0°
HG2	CG	CB	HB3	174.1°	180.0°
HG3	CG	CB	HB2	175.3°	NaN°
HG3	CG	CB	HB3	67.1°	60.0°
HB2	CB	CA	HA	61.0°	65.0°
HB3	CB	CA	HA	178.5°	175.0°
HA	CA	N	H	34.5°	88.9°

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