GN7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.64Å | |
| P | O5' | sing | 1.61Å | 1.62Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.45Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C1' | N7 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| N9 | C8 | doub | 1.31Å | 1.30Å | Aromatic |
| N9 | C4 | sing | 1.34Å | 1.39Å | Aromatic |
| C8 | N7 | sing | 1.35Å | 1.36Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.09Å | |
| N7 | C5 | sing | 1.38Å | 1.38Å | Aromatic |
| C5 | C6 | sing | 1.40Å | 1.43Å | |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | HN1 | sing | 0.97Å | 1.02Å | |
| C2 | N2 | sing | 1.37Å | 1.31Å | |
| C2 | N3 | doub | 1.31Å | 1.33Å | |
| N2 | HN21 | sing | 0.97Å | 1.01Å | |
| N2 | HN22 | sing | 0.97Å | 1.01Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.5° | 109.4° |
| OP1 | P | OP3 | 108.5° | 109.5° |
| OP1 | P | O5' | 107.9° | 109.5° |
| OP2 | P | OP3 | 107.9° | 109.4° |
| OP2 | P | O5' | 107.9° | 109.5° |
| P | OP2 | HOP2 | 119.5° | 106.9° |
| OP3 | P | O5' | 104.1° | 109.5° |
| P | OP3 | HOP3 | 108.5° | 106.8° |
| P | O5' | C5' | 124.8° | 106.8° |
| O5' | C5' | C4' | 110.8° | 109.5° |
| O5' | C5' | H5' | 110.6° | 109.4° |
| O5' | C5' | H5'' | 108.9° | 109.6° |
| C4' | C5' | H5' | 109.3° | 109.4° |
| C4' | C5' | H5'' | 108.9° | 109.4° |
| C5' | C4' | O4' | 111.9° | 110.8° |
| C5' | C4' | C3' | 116.2° | 110.7° |
| C5' | C4' | H4' | 107.2° | 110.6° |
| H5' | C5' | H5'' | 108.3° | 109.5° |
| O4' | C4' | C3' | 104.1° | 103.6° |
| O4' | C4' | H4' | 108.5° | 110.5° |
| C4' | O4' | C1' | 110.6° | 106.8° |
| C3' | C4' | H4' | 108.8° | 110.6° |
| C4' | C3' | O3' | 106.2° | 110.9° |
| C4' | C3' | C2' | 99.2° | 102.1° |
| C4' | C3' | H3' | 111.7° | 110.9° |
| O4' | C1' | C2' | 103.4° | 107.4° |
| O4' | C1' | N7 | 107.2° | 109.9° |
| O4' | C1' | H1' | 110.1° | 109.9° |
| O3' | C3' | C2' | 111.6° | 110.9° |
| O3' | C3' | H3' | 112.3° | 110.8° |
| C3' | O3' | HO3' | 106.2° | 106.8° |
| C2' | C3' | H3' | 114.8° | 111.0° |
| C3' | C2' | C1' | 101.9° | 104.2° |
| C3' | C2' | H2' | 108.5° | 110.5° |
| C3' | C2' | H2'' | 114.3° | 110.5° |
| C1' | C2' | H2' | 109.9° | 110.5° |
| C1' | C2' | H2'' | 112.4° | 110.5° |
| C2' | C1' | N7 | 116.9° | 109.9° |
| C2' | C1' | H1' | 108.8° | 109.8° |
| H2' | C2' | H2'' | 109.6° | 110.5° |
| N7 | C1' | H1' | 110.1° | 109.9° |
| C1' | N7 | C8 | 128.2° | 126.4° |
| C1' | N7 | C5 | 128.0° | 126.5° |
| C8 | N9 | C4 | 102.7° | 109.9° |
| N9 | C8 | N7 | 116.3° | 110.0° |
| N9 | C8 | H8 | 122.0° | 125.0° |
| N9 | C4 | C5 | 110.3° | 106.9° |
| N9 | C4 | N3 | 122.8° | 133.9° |
| N7 | C8 | H8 | 121.7° | 125.0° |
| C8 | N7 | C5 | 103.8° | 107.1° |
| N7 | C5 | C6 | 132.2° | 134.7° |
| N7 | C5 | C4 | 106.9° | 106.2° |
| C6 | C5 | C4 | 120.9° | 119.1° |
| C5 | C6 | O6 | 128.5° | 120.8° |
| C5 | C6 | N1 | 111.0° | 118.4° |
| C5 | C4 | N3 | 126.9° | 119.3° |
| O6 | C6 | N1 | 120.5° | 120.8° |
| C6 | N1 | C2 | 123.8° | 120.3° |
| C6 | N1 | HN1 | 119.1° | 119.8° |
| C2 | N1 | HN1 | 117.1° | 119.9° |
| N1 | C2 | N2 | 115.3° | 119.0° |
| N1 | C2 | N3 | 125.3° | 122.0° |
| N2 | C2 | N3 | 119.4° | 119.0° |
| C2 | N2 | HN21 | 117.0° | 120.0° |
| C2 | N2 | HN22 | 121.8° | 120.0° |
| C2 | N3 | C4 | 112.1° | 121.0° |
| HN21 | N2 | HN22 | 121.2° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 124.5° | 119.9° |
| OP1 | P | OP2 | O5' | 123.6° | 120.0° |
| OP1 | P | OP3 | O5' | 114.7° | 120.1° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 77.0° | 60.0° |
| OP2 | P | OP3 | O5' | 114.4° | 120.0° |
| OP2 | P | OP3 | HOP3 | 49.2° | 60.1° |
| OP2 | P | O5' | C5' | 53.4° | 179.9° |
| OP3 | P | OP2 | HOP2 | 55.6° | 59.9° |
| OP3 | P | O5' | C5' | 167.9° | 60.1° |
| O5' | P | OP2 | HOP2 | 56.4° | 180.0° |
| O5' | P | OP3 | HOP3 | 65.2° | 59.9° |
| P | O5' | C5' | C4' | 132.8° | 180.0° |
| P | O5' | C5' | H5' | 11.4° | 60.1° |
| P | O5' | C5' | H5'' | 107.5° | 60.0° |
| O5' | C5' | C4' | H5' | 122.2° | 119.9° |
| O5' | C5' | C4' | H5'' | 119.7° | 120.1° |
| O5' | C5' | H5' | H5'' | 119.2° | 120.1° |
| O5' | C5' | C4' | O4' | 59.3° | 65.7° |
| O5' | C5' | C4' | C3' | 178.6° | 180.0° |
| O5' | C5' | C4' | H4' | 59.5° | 57.0° |
| C4' | C5' | H5' | H5'' | 118.5° | 119.9° |
| C5' | C4' | O4' | C3' | 126.2° | 118.7° |
| C5' | C4' | O4' | H4' | 118.1° | 122.8° |
| C5' | C4' | C3' | H4' | 121.0° | 122.9° |
| C5' | C4' | O4' | C1' | 108.9° | 158.5° |
| C5' | C4' | C3' | O3' | 158.9° | 86.1° |
| C5' | C4' | C3' | C2' | 85.3° | 155.7° |
| C5' | C4' | C3' | H3' | 36.2° | 37.4° |
| H5' | C5' | C4' | O4' | 178.5° | 174.3° |
| H5' | C5' | C4' | C3' | 59.2° | 60.0° |
| H5' | C5' | C4' | H4' | 62.7° | 62.9° |
| H5'' | C5' | C4' | O4' | 60.4° | 54.4° |
| H5'' | C5' | C4' | C3' | 58.9° | 59.9° |
| H5'' | C5' | C4' | H4' | 179.2° | 177.1° |
| O4' | C4' | C3' | H4' | 115.5° | 118.3° |
| O4' | C4' | C3' | O3' | 77.7° | 155.2° |
| O4' | C4' | C3' | C2' | 38.2° | 36.9° |
| O4' | C4' | C3' | H3' | 159.6° | 81.3° |
| C4' | O4' | C1' | C2' | 11.3° | 26.3° |
| C4' | O4' | C1' | N7 | 135.3° | 145.8° |
| C4' | O4' | C1' | H1' | 104.9° | 93.2° |
| C3' | C4' | O4' | C1' | 17.3° | 39.8° |
| C4' | C3' | O3' | C2' | 107.1° | 112.7° |
| C4' | C3' | O3' | H3' | 122.3° | 123.6° |
| C4' | C3' | C2' | H3' | 119.2° | 118.2° |
| C4' | C3' | O3' | HO3' | 180.0° | 174.3° |
| C4' | C3' | C2' | C1' | 44.6° | 20.9° |
| C4' | C3' | C2' | H2' | 71.2° | 97.8° |
| C4' | C3' | C2' | H2'' | 166.1° | 139.6° |
| H4' | C4' | O4' | C1' | 133.1° | 78.6° |
| H4' | C4' | C3' | O3' | 37.8° | 36.8° |
| H4' | C4' | C3' | C2' | 153.7° | 81.4° |
| H4' | C4' | C3' | H3' | 84.9° | 160.3° |
| O4' | C1' | C2' | C3' | 35.4° | 1.9° |
| O4' | C1' | C2' | N7 | 117.5° | 119.5° |
| O4' | C1' | C2' | H1' | 117.0° | 119.5° |
| O4' | C1' | C2' | H2' | 79.5° | 120.6° |
| O4' | C1' | C2' | H2'' | 158.2° | 116.7° |
| O4' | C1' | N7 | H1' | 119.7° | 121.0° |
| O4' | C1' | N7 | C8 | 41.3° | 28.3° |
| O4' | C1' | N7 | C5 | 135.4° | 151.8° |
| O3' | C3' | C2' | H3' | 129.3° | 123.6° |
| O3' | C3' | C2' | C1' | 66.9° | 139.1° |
| O3' | C3' | C2' | H2' | 177.2° | 20.4° |
| O3' | C3' | C2' | H2'' | 54.6° | 102.2° |
| C2' | C3' | O3' | HO3' | 72.9° | 61.5° |
| C3' | C2' | C1' | H2' | 114.8° | 118.7° |
| C3' | C2' | C1' | H2'' | 122.8° | 118.7° |
| C3' | C2' | H2' | H2'' | 125.4° | 122.6° |
| C3' | C2' | C1' | N7 | 152.8° | 121.5° |
| C3' | C2' | C1' | H1' | 81.7° | 117.5° |
| H3' | C3' | O3' | HO3' | 57.7° | 62.2° |
| H3' | C3' | C2' | C1' | 163.8° | 97.3° |
| H3' | C3' | C2' | H2' | 47.9° | 144.0° |
| H3' | C3' | C2' | H2'' | 74.7° | 21.4° |
| C1' | C2' | H2' | H2'' | 124.0° | 122.6° |
| C2' | C1' | N7 | H1' | 124.9° | 121.0° |
| C2' | C1' | N7 | C8 | 74.1° | 89.8° |
| C2' | C1' | N7 | C5 | 109.2° | 90.2° |
| H2' | C2' | C1' | N7 | 38.0° | 119.8° |
| H2' | C2' | C1' | H1' | 163.5° | 1.2° |
| H2'' | C2' | C1' | N7 | 84.4° | 2.8° |
| H2'' | C2' | C1' | H1' | 41.2° | 123.8° |
| C1' | N7 | C8 | N9 | 177.1° | 180.0° |
| C1' | N7 | C8 | C5 | 177.3° | 180.0° |
| C1' | N7 | C8 | H8 | 2.8° | 0.0° |
| C1' | N7 | C5 | C6 | 2.8° | 0.1° |
| C1' | N7 | C5 | C4 | 177.1° | 180.0° |
| H1' | C1' | N7 | C8 | 161.0° | 149.3° |
| H1' | C1' | N7 | C5 | 15.7° | 30.8° |
| N9 | C8 | N7 | H8 | 179.9° | 180.0° |
| N9 | C8 | N7 | C5 | 0.2° | 0.0° |
| C8 | N9 | C4 | C5 | 0.0° | 0.0° |
| C8 | N9 | C4 | N3 | 179.9° | 180.0° |
| C4 | N9 | C8 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | H8 | 179.9° | 180.0° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| N9 | C4 | C5 | C6 | 179.9° | 179.9° |
| N9 | C4 | C5 | N3 | 179.9° | 180.0° |
| N9 | C4 | N3 | C2 | 180.0° | 180.0° |
| C8 | N7 | C5 | C6 | 179.9° | 179.9° |
| C8 | N7 | C5 | C4 | 0.2° | 0.0° |
| H8 | C8 | N7 | C5 | 179.9° | 180.0° |
| N7 | C5 | C6 | C4 | 179.9° | 179.9° |
| N7 | C5 | C6 | O6 | 0.6° | 0.1° |
| N7 | C5 | C6 | N1 | 179.8° | 179.7° |
| N7 | C5 | C4 | N3 | 179.8° | 179.9° |
| C5 | C6 | O6 | N1 | 179.6° | 179.8° |
| C5 | C6 | N1 | C2 | 0.0° | 0.4° |
| C5 | C6 | N1 | HN1 | 179.6° | 179.9° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C4 | C5 | C6 | O6 | 179.5° | 180.0° |
| C4 | C5 | C6 | N1 | 0.1° | 0.1° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| O6 | C6 | N1 | C2 | 179.6° | 179.7° |
| O6 | C6 | N1 | HN1 | 0.0° | 0.2° |
| C6 | N1 | C2 | HN1 | 179.6° | 179.5° |
| C6 | N1 | C2 | N2 | 179.5° | 179.8° |
| C6 | N1 | C2 | N3 | 0.0° | 0.6° |
| N1 | C2 | N2 | N3 | 179.5° | 179.7° |
| N1 | C2 | N2 | HN21 | 0.9° | 179.7° |
| N1 | C2 | N2 | HN22 | 178.7° | 0.6° |
| N1 | C2 | N3 | C4 | 0.0° | 0.3° |
| HN1 | N1 | C2 | N2 | 0.1° | 0.3° |
| HN1 | N1 | C2 | N3 | 179.6° | 180.0° |
| C2 | N2 | HN21 | HN22 | 179.6° | 179.7° |
| N2 | C2 | N3 | C4 | 179.4° | 180.0° |
| N3 | C2 | N2 | HN21 | 179.6° | 0.0° |
| N3 | C2 | N2 | HN22 | 0.8° | 179.7° |
