GMV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
VB	O1B	sing	1.84Å	1.69Å
VB	O2B	sing	1.84Å	1.73Å
VB	O3B	sing	1.84Å	1.87Å
VB	O4B	sing	1.84Å	2.18Å
VB	O3A	sing	1.84Å	2.01Å
O3A	PA	sing	1.61Å	1.57Å
PA	O1A	doub	1.48Å	1.49Å
PA	O2A	sing	1.61Å	1.52Å
PA	O5'	sing	1.61Å	1.59Å
O5'	C5'	sing	1.43Å	1.46Å
C5'	C4'	sing	1.53Å	1.50Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C3'	sing	1.54Å	1.55Å
O4'	C1'	sing	1.44Å	1.42Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	C2'	sing	1.55Å	1.51Å
C2'	O2'	sing	1.43Å	1.44Å
C2'	C1'	sing	1.55Å	1.52Å
C1'	N9	sing	1.47Å	1.46Å
N9	C8	sing	1.37Å	1.37Å	Aromatic
N9	C4	sing	1.37Å	1.36Å	Aromatic
C8	N7	doub	1.30Å	1.37Å	Aromatic
N7	C5	sing	1.36Å	1.38Å	Aromatic
C5	C6	sing	1.41Å	1.51Å
C5	C4	doub	1.40Å	1.48Å	Aromatic
C6	O6	doub	1.22Å	1.26Å
C6	N1	sing	1.35Å	1.38Å
N1	C2	sing	1.36Å	1.37Å
C2	N2	sing	1.37Å	1.32Å
C2	N3	doub	1.31Å	1.40Å
C4	N3	sing	1.34Å	1.37Å
O1B	H1B	sing	0.97Å	0.95Å
O2B	H2B	sing	0.97Å	0.95Å
O3B	H3B	sing	0.97Å	0.95Å
O4B	H4B	sing	0.97Å	0.95Å
O2A	H2A	sing	0.97Å	0.95Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
O3'	HA	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HB	sing	0.97Å	0.95Å
C8	H8	sing	1.08Å	1.08Å
N1	H1	sing	0.97Å	1.00Å
N2	H21N	sing	0.97Å	1.00Å
N2	H22N	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1B	VB	O2B	114.8°	120.0°
O1B	VB	O3B	120.4°	120.0°
O1B	VB	O4B	89.2°	90.0°
O1B	VB	O3A	97.2°	90.0°
VB	O1B	H1B	109.5°	114.0°
O2B	VB	O3B	124.2°	120.0°
O2B	VB	O4B	88.9°	90.0°
O2B	VB	O3A	91.2°	90.0°
VB	O2B	H2B	109.5°	114.0°
O3B	VB	O4B	84.0°	90.0°
O3B	VB	O3A	90.1°	90.0°
VB	O3B	H3B	109.5°	114.0°
O4B	VB	O3A	172.9°	180.0°
VB	O4B	H4B	109.5°	114.1°
VB	O3A	PA	135.5°	114.0°
O3A	PA	O1A	110.1°	109.4°
O3A	PA	O2A	111.0°	109.5°
O3A	PA	O5'	104.1°	109.5°
O1A	PA	O2A	112.9°	109.5°
O1A	PA	O5'	109.7°	109.5°
O2A	PA	O5'	108.6°	109.5°
PA	O2A	H2A	109.5°	114.0°
PA	O5'	C5'	124.5°	123.0°
O5'	C5'	C4'	105.5°	109.5°
O5'	C5'	H5'1	110.5°	109.5°
O5'	C5'	H5'2	110.5°	109.5°
C5'	C4'	O4'	107.1°	109.8°
C5'	C4'	C3'	111.9°	109.9°
C4'	C5'	H5'1	110.4°	109.4°
C4'	C5'	H5'2	110.5°	109.4°
C5'	C4'	H4'	110.4°	109.9°
O4'	C4'	C3'	106.3°	107.3°
C4'	O4'	C1'	110.1°	106.9°
O4'	C4'	H4'	111.3°	109.8°
C4'	C3'	O3'	110.7°	110.5°
C4'	C3'	C2'	103.9°	104.2°
C3'	C4'	H4'	109.8°	110.0°
C4'	C3'	H3'	110.1°	110.5°
O4'	C1'	C2'	106.2°	103.5°
O4'	C1'	N9	109.7°	110.6°
O4'	C1'	H1'	112.1°	110.6°
O3'	C3'	C2'	109.5°	110.5°
O3'	C3'	H3'	111.7°	110.5°
C3'	O3'	HA	109.5°	114.0°
C3'	C2'	O2'	114.0°	110.9°
C3'	C2'	C1'	102.9°	102.1°
C2'	C3'	H3'	110.7°	110.6°
C3'	C2'	H2'	108.2°	110.9°
O2'	C2'	C1'	114.1°	111.0°
O2'	C2'	H2'	109.1°	110.8°
C2'	O2'	HB	109.5°	114.0°
C2'	C1'	N9	106.4°	110.6°
C2'	C1'	H1'	110.6°	110.6°
C1'	C2'	H2'	108.1°	111.0°
C1'	N9	C8	129.1°	126.3°
C1'	N9	C4	120.5°	126.2°
N9	C1'	H1'	111.5°	110.7°
C8	N9	C4	110.3°	107.5°
N9	C8	N7	108.9°	109.8°
N9	C8	H8	125.5°	125.1°
N9	C4	C5	105.5°	106.1°
N9	C4	N3	135.1°	134.2°
C8	N7	C5	109.2°	109.3°
N7	C8	H8	125.6°	125.1°
N7	C5	C6	137.7°	134.1°
N7	C5	C4	106.0°	107.3°
C6	C5	C4	116.4°	118.6°
C5	C6	O6	118.7°	120.8°
C5	C6	N1	120.4°	118.4°
C5	C4	N3	119.4°	119.7°
O6	C6	N1	120.9°	120.8°
C6	N1	C2	119.4°	120.3°
C6	N1	H1	120.3°	119.9°
N1	C2	N2	119.4°	119.1°
N1	C2	N3	123.8°	121.9°
C2	N1	H1	120.3°	119.8°
N2	C2	N3	116.7°	119.0°
C2	N2	H21N	120.0°	120.0°
C2	N2	H22N	120.0°	120.0°
C2	N3	C4	120.7°	121.1°
H5'1	C5'	H5'2	109.5°	109.4°
H21N	N2	H22N	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1B	VB	O2B	O3B	170.6°	179.9°
O1B	VB	O2B	O4B	88.6°	90.1°
O1B	VB	O2B	O3A	98.5°	90.0°
O1B	VB	O3B	O4B	85.5°	90.0°
O1B	VB	O3B	O3A	98.4°	90.0°
O1B	VB	O4B	O3A	154.5°	155.3°
O1B	VB	O3A	PA	147.1°	60.0°
O1B	VB	O2B	H2B	180.0°	180.0°
O1B	VB	O3B	H3B	180.0°	90.1°
O1B	VB	O4B	H4B	180.0°	180.0°
O2B	VB	O3B	O4B	84.6°	90.0°
O2B	VB	O3B	O3A	91.5°	89.9°
O2B	VB	O4B	O3A	90.7°	84.7°
O2B	VB	O3A	PA	97.8°	60.0°
O2B	VB	O1B	H1B	180.0°	179.9°
O2B	VB	O3B	H3B	9.8°	90.0°
O2B	VB	O4B	H4B	65.2°	59.9°
O3B	VB	O4B	O3A	33.8°	35.3°
O3B	VB	O3A	PA	26.4°	180.0°
O3B	VB	O1B	H1B	9.0°	0.0°
O3B	VB	O2B	H2B	9.4°	0.1°
O3B	VB	O4B	H4B	59.3°	60.0°
O4B	VB	O3A	PA	7.3°	144.7°
O4B	VB	O1B	H1B	91.6°	90.0°
O4B	VB	O2B	H2B	91.4°	89.9°
O4B	VB	O3B	H3B	94.5°	0.0°
VB	O3A	PA	O1A	135.5°	60.0°
VB	O3A	PA	O2A	9.7°	60.0°
VB	O3A	PA	O5'	107.0°	180.0°
O3A	VB	O1B	H1B	85.4°	90.0°
O3A	VB	O2B	H2B	81.5°	90.0°
O3A	VB	O3B	H3B	81.6°	179.9°
O3A	VB	O4B	H4B	25.5°	24.8°
O3A	PA	O1A	O2A	124.7°	120.0°
O3A	PA	O1A	O5'	114.1°	120.0°
O3A	PA	O2A	O5'	113.9°	120.0°
O3A	PA	O5'	C5'	176.7°	175.0°
O3A	PA	O2A	H2A	124.2°	60.0°
O1A	PA	O2A	O5'	121.8°	120.0°
O1A	PA	O5'	C5'	65.5°	55.1°
O1A	PA	O2A	H2A	0.0°	180.0°
O2A	PA	O5'	C5'	58.3°	65.0°
PA	O5'	C5'	C4'	163.4°	180.0°
O5'	PA	O2A	H2A	121.9°	60.0°
PA	O5'	C5'	H5'1	77.2°	60.0°
PA	O5'	C5'	H5'2	44.0°	60.0°
O5'	C5'	C4'	H5'1	119.4°	120.0°
O5'	C5'	C4'	H5'2	119.4°	120.0°
O5'	C5'	C4'	O4'	174.8°	66.4°
O5'	C5'	C4'	C3'	58.8°	175.7°
O5'	C5'	H5'1	H5'2	121.9°	120.0°
O5'	C5'	C4'	H4'	63.8°	54.5°
C5'	C4'	O4'	C3'	119.7°	119.4°
C5'	C4'	O4'	H4'	120.8°	121.0°
C5'	C4'	C3'	H4'	122.9°	121.1°
C5'	C4'	O4'	C1'	123.7°	145.9°
C5'	C4'	C3'	O3'	142.5°	119.9°
C5'	C4'	C3'	C2'	100.0°	121.5°
C4'	C5'	H5'1	H5'2	121.8°	119.9°
C5'	C4'	C3'	H3'	18.5°	2.7°
O4'	C4'	C3'	H4'	120.5°	119.5°
O4'	C4'	C3'	O3'	100.9°	120.7°
O4'	C4'	C3'	C2'	16.5°	2.0°
C4'	O4'	C1'	C2'	23.0°	40.0°
C4'	O4'	C1'	N9	137.6°	158.5°
O4'	C4'	C5'	H5'1	65.8°	53.6°
O4'	C4'	C5'	H5'2	55.4°	173.5°
O4'	C4'	C3'	H3'	135.1°	116.7°
C4'	O4'	C1'	H1'	97.9°	78.4°
C3'	C4'	O4'	C1'	4.0°	26.5°
C4'	C3'	O3'	C2'	114.0°	114.7°
C4'	C3'	O3'	H3'	123.1°	122.6°
C4'	C3'	C2'	H3'	118.2°	118.7°
C4'	C3'	C2'	O2'	153.3°	139.1°
C4'	C3'	C2'	C1'	29.2°	20.9°
C3'	C4'	C5'	H5'1	178.1°	64.3°
C3'	C4'	C5'	H5'2	60.6°	55.7°
C4'	C3'	O3'	HA	180.0°	180.0°
C4'	C3'	C2'	H2'	85.1°	97.4°
O4'	C1'	C2'	C3'	32.6°	37.0°
O4'	C1'	C2'	O2'	156.7°	155.2°
O4'	C1'	C2'	N9	116.8°	118.5°
O4'	C1'	C2'	H1'	121.9°	118.5°
O4'	C1'	N9	H1'	124.8°	123.0°
O4'	C1'	N9	C8	50.6°	23.6°
O4'	C1'	N9	C4	130.9°	156.7°
C1'	O4'	C4'	H4'	115.5°	93.1°
O4'	C1'	C2'	H2'	81.8°	81.2°
O3'	C3'	C2'	H3'	123.5°	122.6°
O3'	C3'	C2'	O2'	34.9°	20.5°
O3'	C3'	C2'	C1'	89.2°	97.8°
O3'	C3'	C4'	H4'	19.6°	1.2°
O3'	C3'	C2'	H2'	156.6°	144.0°
C3'	C2'	O2'	C1'	117.9°	112.7°
C3'	C2'	O2'	H2'	121.2°	123.6°
C3'	C2'	C1'	H2'	114.4°	118.2°
C3'	C2'	C1'	N9	149.5°	155.5°
C2'	C3'	C4'	H4'	137.0°	117.4°
C3'	C2'	C1'	H1'	89.2°	81.5°
C2'	C3'	O3'	HA	66.0°	65.3°
C3'	C2'	O2'	HB	180.0°	61.4°
O2'	C2'	C1'	H2'	121.5°	123.6°
O2'	C2'	C1'	N9	86.5°	86.3°
O2'	C2'	C3'	H3'	88.6°	102.2°
O2'	C2'	C1'	H1'	34.8°	36.7°
C2'	C1'	N9	H1'	120.7°	122.9°
C2'	C1'	N9	C8	63.9°	90.5°
C2'	C1'	N9	C4	114.6°	89.2°
C1'	C2'	C3'	H3'	147.3°	139.6°
C1'	C2'	O2'	HB	62.1°	174.2°
C1'	N9	C8	C4	178.7°	179.8°
C1'	N9	C8	N7	178.4°	180.0°
C1'	N9	C4	C5	178.5°	179.9°
C1'	N9	C4	N3	1.2°	0.7°
N9	C1'	C2'	H2'	35.1°	37.3°
C1'	N9	C8	H8	1.6°	0.0°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.0°	0.0°
C8	N9	C4	C5	0.3°	0.4°
C8	N9	C4	N3	180.0°	179.6°
C8	N9	C1'	H1'	175.4°	146.5°
C4	N9	C8	N7	0.2°	0.3°
N9	C4	C5	N7	0.3°	0.3°
N9	C4	C5	C6	179.7°	179.8°
N9	C4	C5	N3	179.7°	179.3°
N9	C4	N3	C2	178.4°	179.6°
C4	N9	C1'	H1'	6.1°	33.7°
C4	N9	C8	H8	179.8°	179.8°
C8	N7	C5	C6	179.9°	180.0°
C8	N7	C5	C4	0.2°	0.2°
N7	C5	C6	C4	180.0°	179.8°
N7	C5	C6	O6	0.4°	0.1°
N7	C5	C6	N1	179.6°	180.0°
N7	C5	C4	N3	180.0°	179.7°
C5	N7	C8	H8	180.0°	180.0°
C5	C6	O6	N1	180.0°	179.9°
C5	C6	N1	C2	0.3°	0.0°
C6	C5	C4	N3	0.0°	0.5°
C5	C6	N1	H1	179.6°	180.0°
C4	C5	C6	O6	179.6°	179.7°
C4	C5	C6	N1	0.5°	0.2°
C5	C4	N3	C2	1.2°	0.5°
O6	C6	N1	C2	179.6°	180.0°
O6	C6	N1	H1	0.4°	0.1°
C6	N1	C2	H1	180.0°	180.0°
C6	N1	C2	N2	178.9°	180.0°
C6	N1	C2	N3	1.7°	0.1°
N1	C2	N2	N3	177.4°	179.9°
N1	C2	N3	C4	2.2°	0.2°
N1	C2	N2	H21N	177.4°	0.0°
N1	C2	N2	H22N	2.6°	180.0°
N2	C2	N3	C4	179.5°	179.7°
N2	C2	N1	H1	1.1°	0.0°
C2	N2	H21N	H22N	180.0°	180.0°
N3	C2	N1	H1	178.3°	180.0°
N3	C2	N2	H21N	0.0°	180.0°
N3	C2	N2	H22N	180.0°	0.1°
H5'1	C5'	C4'	H4'	55.6°	174.5°
H5'2	C5'	C4'	H4'	176.8°	65.5°
H4'	C4'	C3'	H3'	104.4°	123.8°
H3'	C3'	O3'	HA	56.9°	57.4°
H3'	C3'	C2'	H2'	33.1°	21.3°
H1'	C1'	C2'	H2'	156.4°	160.3°
H2'	C2'	O2'	HB	58.8°	62.1°

Release date:	2013-07-17
Definition date:	2013-06-04
Last modified:	2014-09-05
Release status:	REL
Processing site:	EBI
Derived from:	4BRL