GMU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.62Å | 1.47Å | |
| OP3 | H3P | sing | 0.98Å | 0.95Å | |
| P | OP2 | sing | 1.62Å | 1.49Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| P | OP1 | doub | 1.50Å | 12.50Å | |
| OP2 | H2P | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.52Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.46Å | |
| C3' | C2' | sing | 1.51Å | 1.51Å | |
| C3' | H1 | sing | 1.09Å | 1.11Å | |
| O3' | H3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.52Å | 1.52Å | |
| C2' | O2' | sing | 1.41Å | 1.42Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| C1' | N1 | sing | 1.43Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N1 | C2 | sing | 1.41Å | 1.40Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| C2 | O2 | doub | 1.23Å | 1.22Å | |
| C2 | N3 | sing | 1.40Å | 1.36Å | |
| N3 | C4 | sing | 1.39Å | 1.36Å | |
| N3 | HN3 | sing | 1.02Å | 1.02Å | |
| C6 | C5 | doub | 1.34Å | 1.34Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C5 | C5M | sing | 1.50Å | 1.48Å | |
| C5 | C4 | sing | 1.49Å | 1.46Å | |
| C5M | H71 | sing | 1.09Å | 1.11Å | |
| C5M | H72 | sing | 1.09Å | 1.11Å | |
| C5M | H73 | sing | 1.09Å | 1.12Å | |
| C4 | O4 | doub | 1.23Å | 1.21Å | |
| O2' | CA' | sing | 1.42Å | 1.41Å | |
| CA' | CB' | sing | 1.52Å | 1.52Å | |
| CA' | HA'1 | sing | 1.09Å | 1.12Å | |
| CA' | HA'2 | sing | 1.10Å | 1.12Å | |
| CB' | NC' | sing | 1.48Å | 1.48Å | |
| CB' | HB'1 | sing | 1.10Å | 1.12Å | |
| CB' | HB'2 | sing | 1.09Å | 1.12Å | |
| NC' | CD' | sing | 1.46Å | 1.36Å | |
| NC' | HC' | sing | 1.01Å | 1.02Å | |
| CD' | NE' | sing | 1.46Å | 1.35Å | |
| CD' | NF' | sing | 1.46Å | 1.34Å | |
| CD' | HD' | sing | 1.10Å | 1.11Å | |
| NE' | HE'1 | sing | 1.02Å | 1.02Å | |
| NE' | HE'2 | sing | 1.02Å | 1.02Å | |
| NF' | HF'1 | sing | 1.02Å | 1.02Å | |
| NF' | HF'2 | sing | 1.02Å | 1.02Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | H3P | 118.8° | 119.0° |
| OP3 | P | OP2 | 118.8° | 103.3° |
| OP3 | P | O5' | 111.7° | 103.8° |
| OP3 | P | OP1 | 128.6° | 115.3° |
| OP2 | P | O5' | 104.0° | 102.9° |
| OP2 | P | OP1 | 105.2° | 114.9° |
| P | OP2 | H2P | 118.8° | 119.0° |
| O5' | P | OP1 | 79.3° | 115.0° |
| P | O5' | C5' | 119.4° | 118.5° |
| O5' | C5' | C4' | 109.7° | 108.6° |
| O5' | C5' | H5' | 112.1° | 109.2° |
| O5' | C5' | H5'' | 112.1° | 109.3° |
| C4' | C5' | H5' | 112.2° | 110.1° |
| C4' | C5' | H5'' | 112.1° | 110.1° |
| C5' | C4' | O4' | 111.7° | 108.2° |
| C5' | C4' | C3' | 114.5° | 113.3° |
| C5' | C4' | H4' | 102.5° | 109.3° |
| H5' | C5' | H5'' | 98.3° | 109.6° |
| O4' | C4' | C3' | 102.6° | 105.9° |
| O4' | C4' | H4' | 114.4° | 107.7° |
| C4' | O4' | C1' | 109.0° | 109.2° |
| C3' | C4' | H4' | 111.5° | 112.2° |
| C4' | C3' | O3' | 110.5° | 107.9° |
| C4' | C3' | C2' | 100.4° | 102.1° |
| C4' | C3' | H1 | 116.6° | 114.5° |
| O4' | C1' | C2' | 106.0° | 106.5° |
| O4' | C1' | N1 | 109.5° | 109.0° |
| O4' | C1' | H1' | 113.0° | 108.9° |
| O3' | C3' | C2' | 114.8° | 110.3° |
| O3' | C3' | H1 | 102.7° | 107.8° |
| C3' | O3' | H3' | 110.4° | 106.4° |
| C2' | C3' | H1 | 112.4° | 114.0° |
| C3' | C2' | C1' | 99.8° | 102.0° |
| C3' | C2' | O2' | 108.3° | 112.3° |
| C3' | C2' | H2' | 117.1° | 110.1° |
| C1' | C2' | O2' | 112.1° | 112.6° |
| C1' | C2' | H2' | 113.7° | 111.1° |
| C2' | C1' | N1 | 113.0° | 112.5° |
| C2' | C1' | H1' | 109.4° | 112.6° |
| O2' | C2' | H2' | 105.9° | 108.6° |
| C2' | O2' | CA' | 114.2° | 111.9° |
| N1 | C1' | H1' | 106.0° | 107.3° |
| C1' | N1 | C2 | 117.5° | 121.3° |
| C1' | N1 | C6 | 123.4° | 118.5° |
| C2 | N1 | C6 | 119.2° | 120.2° |
| N1 | C2 | O2 | 121.0° | 123.8° |
| N1 | C2 | N3 | 115.9° | 115.1° |
| N1 | C6 | C5 | 125.0° | 124.5° |
| N1 | C6 | H6 | 118.6° | 114.7° |
| O2 | C2 | N3 | 123.1° | 121.1° |
| C2 | N3 | C4 | 127.1° | 127.0° |
| C2 | N3 | HN3 | 116.5° | 116.4° |
| C4 | N3 | HN3 | 116.5° | 116.6° |
| N3 | C4 | C5 | 115.6° | 114.8° |
| N3 | C4 | O4 | 120.5° | 123.6° |
| C5 | C6 | H6 | 116.4° | 120.7° |
| C6 | C5 | C5M | 123.5° | 123.6° |
| C6 | C5 | C4 | 117.2° | 118.4° |
| C5M | C5 | C4 | 119.3° | 118.0° |
| C5 | C5M | H71 | 107.2° | 109.7° |
| C5 | C5M | H72 | 123.5° | 109.8° |
| C5 | C5M | H73 | 107.2° | 109.7° |
| C5 | C4 | O4 | 123.8° | 121.6° |
| H71 | C5M | H72 | 107.2° | 109.4° |
| H71 | C5M | H73 | 102.5° | 109.4° |
| H72 | C5M | H73 | 107.3° | 108.9° |
| O2' | CA' | CB' | 108.0° | 109.4° |
| O2' | CA' | HA'1 | 112.8° | 108.0° |
| O2' | CA' | HA'2 | 112.8° | 108.7° |
| CB' | CA' | HA'1 | 112.8° | 110.1° |
| CB' | CA' | HA'2 | 112.8° | 111.6° |
| CA' | CB' | NC' | 109.6° | 109.6° |
| CA' | CB' | HB'1 | 112.2° | 111.3° |
| CA' | CB' | HB'2 | 112.2° | 110.4° |
| HA'1 | CA' | HA'2 | 97.7° | 109.0° |
| NC' | CB' | HB'1 | 112.2° | 108.2° |
| NC' | CB' | HB'2 | 112.2° | 108.2° |
| CB' | NC' | CD' | 128.7° | 111.9° |
| CB' | NC' | HC' | 105.5° | 107.1° |
| HB'1 | CB' | HB'2 | 98.2° | 109.1° |
| CD' | NC' | HC' | 105.5° | 109.4° |
| NC' | CD' | NE' | 119.6° | 111.9° |
| NC' | CD' | NF' | 122.3° | 108.1° |
| NC' | CD' | HD' | 40.4° | 111.1° |
| NE' | CD' | NF' | 118.1° | 108.5° |
| NE' | CD' | HD' | 159.8° | 109.5° |
| CD' | NE' | HE'1 | 108.5° | 109.0° |
| CD' | NE' | HE'2 | 119.6° | 109.6° |
| NF' | CD' | HD' | 81.9° | 107.6° |
| CD' | NF' | HF'1 | 107.6° | 109.3° |
| CD' | NF' | HF'2 | 122.2° | 108.9° |
| HE'1 | NE' | HE'2 | 108.6° | 106.1° |
| HF'1 | NF' | HF'2 | 107.7° | 106.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP2 | O5' | 125.0° | 107.7° |
| OP3 | P | OP2 | OP1 | 152.5° | 126.5° |
| OP3 | P | O5' | OP1 | 127.5° | 126.9° |
| OP3 | P | OP2 | H2P | 180.0° | 78.5° |
| OP3 | P | O5' | C5' | 42.4° | 53.2° |
| H3P | OP3 | P | OP2 | 180.0° | 77.5° |
| H3P | OP3 | P | O5' | 58.8° | 175.4° |
| H3P | OP3 | P | OP1 | 34.8° | 48.7° |
| OP2 | P | O5' | OP1 | 103.1° | 125.8° |
| OP2 | P | O5' | C5' | 171.8° | 54.2° |
| O5' | P | OP2 | H2P | 55.0° | 173.8° |
| P | O5' | C5' | C4' | 170.9° | 180.0° |
| P | O5' | C5' | H5' | 45.6° | 59.9° |
| P | O5' | C5' | H5'' | 63.9° | 59.9° |
| OP1 | P | OP2 | H2P | 27.5° | 48.0° |
| OP1 | P | O5' | C5' | 85.1° | 179.9° |
| O5' | C5' | C4' | H5' | 125.2° | 119.5° |
| O5' | C5' | C4' | H5'' | 125.2° | 119.6° |
| O5' | C5' | H5' | H5'' | 118.1° | 119.6° |
| O5' | C5' | C4' | O4' | 60.9° | 62.4° |
| O5' | C5' | C4' | C3' | 55.3° | 179.5° |
| O5' | C5' | C4' | H4' | 176.2° | 54.6° |
| C4' | C5' | H5' | H5'' | 118.0° | 121.2° |
| C5' | C4' | O4' | C3' | 123.2° | 121.7° |
| C5' | C4' | O4' | H4' | 115.8° | 118.1° |
| C5' | C4' | C3' | H4' | 115.8° | 124.4° |
| C5' | C4' | O4' | C1' | 146.3° | 109.0° |
| C5' | C4' | C3' | O3' | 74.6° | 156.8° |
| C5' | C4' | C3' | C2' | 163.9° | 86.9° |
| C5' | C4' | C3' | H1 | 42.2° | 36.8° |
| H5' | C5' | C4' | O4' | 64.4° | 57.1° |
| H5' | C5' | C4' | C3' | 179.5° | 60.0° |
| H5' | C5' | C4' | H4' | 58.5° | 174.1° |
| H5'' | C5' | C4' | O4' | 173.9° | 178.0° |
| H5'' | C5' | C4' | C3' | 70.0° | 60.9° |
| H5'' | C5' | C4' | H4' | 51.0° | 65.0° |
| O4' | C4' | C3' | H4' | 122.9° | 117.2° |
| O4' | C4' | C3' | O3' | 164.1° | 84.7° |
| O4' | C4' | C3' | C2' | 42.6° | 31.5° |
| O4' | C4' | C3' | H1 | 79.1° | 155.2° |
| C4' | O4' | C1' | C2' | 5.8° | 11.3° |
| C4' | O4' | C1' | N1 | 116.5° | 132.9° |
| C4' | O4' | C1' | H1' | 125.7° | 110.3° |
| C3' | C4' | O4' | C1' | 23.1° | 12.8° |
| C4' | C3' | O3' | C2' | 112.6° | 110.7° |
| C4' | C3' | O3' | H1 | 125.1° | 124.2° |
| C4' | C3' | C2' | H1 | 124.6° | 124.0° |
| C4' | C3' | O3' | H3' | 180.0° | 15.2° |
| C4' | C3' | C2' | C1' | 45.0° | 37.1° |
| C4' | C3' | C2' | O2' | 72.3° | 158.0° |
| C4' | C3' | C2' | H2' | 168.1° | 80.9° |
| H4' | C4' | O4' | C1' | 97.9° | 133.0° |
| H4' | C4' | C3' | O3' | 41.2° | 32.5° |
| H4' | C4' | C3' | C2' | 80.3° | 148.7° |
| H4' | C4' | C3' | H1 | 158.0° | 87.6° |
| O4' | C1' | C2' | C3' | 32.2° | 30.7° |
| O4' | C1' | C2' | N1 | 120.0° | 119.3° |
| O4' | C1' | C2' | H1' | 122.1° | 119.3° |
| O4' | C1' | C2' | O2' | 82.3° | 151.3° |
| O4' | C1' | C2' | H2' | 157.7° | 86.6° |
| O4' | C1' | N1 | H1' | 122.2° | 117.7° |
| O4' | C1' | N1 | C2 | 157.3° | 147.8° |
| O4' | C1' | N1 | C6 | 23.5° | 32.3° |
| O3' | C3' | C2' | H1 | 117.0° | 121.5° |
| O3' | C3' | C2' | C1' | 163.4° | 77.4° |
| O3' | C3' | C2' | O2' | 46.1° | 43.5° |
| O3' | C3' | C2' | H2' | 73.5° | 164.6° |
| C2' | C3' | O3' | H3' | 67.4° | 95.6° |
| C3' | C2' | C1' | O2' | 114.5° | 120.6° |
| C3' | C2' | C1' | H2' | 125.5° | 117.3° |
| C3' | C2' | O2' | H2' | 126.4° | 122.0° |
| C3' | C2' | C1' | N1 | 87.9° | 150.0° |
| C3' | C2' | C1' | H1' | 154.3° | 88.5° |
| C3' | C2' | O2' | CA' | 175.4° | 60.0° |
| H1 | C3' | O3' | H3' | 54.9° | 139.4° |
| H1 | C3' | C2' | C1' | 79.6° | 161.1° |
| H1 | C3' | C2' | O2' | 163.0° | 78.0° |
| H1 | C3' | C2' | H2' | 43.5° | 43.1° |
| C1' | C2' | O2' | H2' | 124.5° | 123.5° |
| C2' | C1' | N1 | H1' | 119.9° | 124.4° |
| C2' | C1' | N1 | C2 | 84.7° | 94.3° |
| C2' | C1' | N1 | C6 | 94.5° | 85.6° |
| C1' | C2' | O2' | CA' | 75.5° | 174.5° |
| O2' | C2' | C1' | N1 | 157.7° | 89.4° |
| O2' | C2' | C1' | H1' | 39.8° | 32.1° |
| C2' | O2' | CA' | CB' | 178.7° | 179.7° |
| C2' | O2' | CA' | HA'1 | 53.5° | 60.0° |
| C2' | O2' | CA' | HA'2 | 56.0° | 58.1° |
| H2' | C2' | C1' | N1 | 37.6° | 32.7° |
| H2' | C2' | C1' | H1' | 80.2° | 154.2° |
| H2' | C2' | O2' | CA' | 49.0° | 62.0° |
| C1' | N1 | C2 | C6 | 179.3° | 179.9° |
| C1' | N1 | C2 | O2 | 0.2° | 0.1° |
| C1' | N1 | C2 | N3 | 178.8° | 180.0° |
| C1' | N1 | C6 | C5 | 178.4° | 180.0° |
| C1' | N1 | C6 | H6 | 1.6° | 0.0° |
| H1' | C1' | N1 | C2 | 35.1° | 30.1° |
| H1' | C1' | N1 | C6 | 145.6° | 150.0° |
| N1 | C2 | O2 | N3 | 178.5° | 179.9° |
| N1 | C2 | N3 | C4 | 3.0° | 0.0° |
| N1 | C2 | N3 | HN3 | 177.0° | 179.9° |
| C2 | N1 | C6 | C5 | 0.8° | 0.0° |
| C2 | N1 | C6 | H6 | 179.2° | 180.0° |
| C6 | N1 | C2 | O2 | 179.5° | 180.0° |
| C6 | N1 | C2 | N3 | 1.9° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C5M | 179.6° | 180.0° |
| N1 | C6 | C5 | C4 | 2.6° | 0.0° |
| O2 | C2 | N3 | C4 | 178.4° | 179.9° |
| O2 | C2 | N3 | HN3 | 1.6° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | C5 | 1.2° | 0.1° |
| C2 | N3 | C4 | O4 | 179.7° | 179.9° |
| N3 | C4 | C5 | C6 | 1.6° | 0.0° |
| N3 | C4 | C5 | C5M | 179.5° | 180.0° |
| N3 | C4 | C5 | O4 | 178.5° | 180.0° |
| HN3 | N3 | C4 | C5 | 178.8° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.3° | 0.0° |
| C6 | C5 | C5M | C4 | 177.7° | 180.0° |
| C6 | C5 | C5M | H71 | 54.8° | 64.2° |
| C6 | C5 | C5M | H72 | 180.0° | 56.0° |
| C6 | C5 | C5M | H73 | 54.7° | 175.6° |
| C6 | C5 | C4 | O4 | 176.8° | 180.0° |
| H6 | C6 | C5 | C5M | 0.4° | 0.0° |
| H6 | C6 | C5 | C4 | 177.4° | 180.0° |
| C5 | C5M | H71 | H72 | 134.5° | 120.5° |
| C5 | C5M | H71 | H73 | 112.7° | 120.4° |
| C5 | C5M | H72 | H73 | 125.3° | 120.1° |
| C5M | C5 | C4 | O4 | 1.0° | 0.0° |
| C4 | C5 | C5M | H71 | 127.6° | 115.8° |
| C4 | C5 | C5M | H72 | 2.3° | 124.0° |
| C4 | C5 | C5M | H73 | 123.0° | 4.4° |
| H71 | C5M | H72 | H73 | 109.5° | 119.5° |
| O2' | CA' | CB' | HA'1 | 125.3° | 118.5° |
| O2' | CA' | CB' | HA'2 | 125.3° | 120.4° |
| O2' | CA' | HA'1 | HA'2 | 118.7° | 118.0° |
| O2' | CA' | CB' | NC' | 62.5° | 178.5° |
| O2' | CA' | CB' | HB'1 | 172.2° | 61.9° |
| O2' | CA' | CB' | HB'2 | 62.8° | 59.4° |
| CB' | CA' | HA'1 | HA'2 | 118.7° | 122.7° |
| CA' | CB' | NC' | HB'1 | 125.3° | 121.5° |
| CA' | CB' | NC' | HB'2 | 125.3° | 120.4° |
| CA' | CB' | HB'1 | HB'2 | 118.1° | 122.1° |
| CA' | CB' | NC' | CD' | 86.6° | 179.9° |
| CA' | CB' | NC' | HC' | 38.7° | 60.0° |
| HA'1 | CA' | CB' | NC' | 62.8° | 60.0° |
| HA'1 | CA' | CB' | HB'1 | 62.5° | 179.7° |
| HA'1 | CA' | CB' | HB'2 | 171.9° | 59.0° |
| HA'2 | CA' | CB' | NC' | 172.2° | 61.1° |
| HA'2 | CA' | CB' | HB'1 | 47.0° | 58.5° |
| HA'2 | CA' | CB' | HB'2 | 62.5° | 179.8° |
| NC' | CB' | HB'1 | HB'2 | 118.1° | 117.5° |
| CB' | NC' | CD' | HC' | 125.3° | 118.5° |
| CB' | NC' | CD' | NE' | 172.8° | 62.8° |
| CB' | NC' | CD' | NF' | 7.3° | 177.8° |
| CB' | NC' | CD' | HD' | 2.8° | 60.0° |
| HB'1 | CB' | NC' | CD' | 148.1° | 58.6° |
| HB'1 | CB' | NC' | HC' | 86.6° | 178.5° |
| HB'2 | CB' | NC' | CD' | 38.7° | 59.5° |
| HB'2 | CB' | NC' | HC' | 164.0° | 60.4° |
| NC' | CD' | NE' | NF' | 179.9° | 119.1° |
| NC' | CD' | NE' | HD' | 8.2° | 123.7° |
| NC' | CD' | NF' | HD' | 3.0° | 120.1° |
| NC' | CD' | NE' | HE'1 | 54.7° | 176.8° |
| NC' | CD' | NE' | HE'2 | 180.0° | 67.5° |
| NC' | CD' | NF' | HF'1 | 54.7° | 57.7° |
| NC' | CD' | NF' | HF'2 | 180.0° | 58.0° |
| HC' | NC' | CD' | NE' | 61.9° | 178.6° |
| HC' | NC' | CD' | NF' | 118.0° | 59.3° |
| HC' | NC' | CD' | HD' | 122.5° | 58.5° |
| NE' | CD' | NF' | HD' | 177.2° | 118.4° |
| CD' | NE' | HE'1 | HE'2 | 131.5° | 118.0° |
| NE' | CD' | NF' | HF'1 | 125.4° | 179.2° |
| NE' | CD' | NF' | HF'2 | 0.1° | 63.6° |
| NF' | CD' | NE' | HE'1 | 125.1° | 57.7° |
| NF' | CD' | NE' | HE'2 | 0.1° | 173.4° |
| CD' | NF' | HF'1 | HF'2 | 133.5° | 117.4° |
| HD' | CD' | NE' | HE'1 | 63.0° | 59.5° |
| HD' | CD' | NE' | HE'2 | 171.8° | 56.2° |
| HD' | CD' | NF' | HF'1 | 51.8° | 62.4° |
| HD' | CD' | NF' | HF'2 | 177.1° | 178.0° |
