GMS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | SE | sing | 2.27Å | 2.13Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | OP2 | sing | 1.61Å | 38.48Å | |
| SE | HS | sing | 1.56Å | 1.50Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.45Å | |
| C4 | N3 | sing | 1.34Å | 1.35Å | |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| N3 | C2 | doub | 1.31Å | 1.30Å | |
| C2 | N2 | sing | 1.37Å | 1.31Å | |
| C2 | N1 | sing | 1.36Å | 1.39Å | |
| N2 | H21 | sing | 0.97Å | 1.00Å | |
| N2 | H22 | sing | 0.97Å | 1.00Å | |
| N1 | C6 | sing | 1.35Å | 1.38Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| C6 | O6 | doub | 1.22Å | 1.25Å | |
| C6 | C5 | sing | 1.41Å | 1.42Å | |
| C5 | N7 | sing | 1.36Å | 1.40Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.28Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.55Å | 1.48Å | |
| C2' | C3' | sing | 1.54Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.40Å | |
| C4' | C3' | sing | 1.54Å | 1.49Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.46Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | SE | 114.0° | 109.5° |
| OP1 | P | O5' | 104.8° | 109.4° |
| OP1 | P | OP2 | 121.3° | 109.4° |
| SE | P | O5' | 112.4° | 109.5° |
| SE | P | OP2 | 98.1° | 109.5° |
| P | SE | HS | 109.5° | 101.0° |
| O5' | P | OP2 | 17.5° | 109.5° |
| P | O5' | C5' | 122.6° | 123.0° |
| P | OP2 | HOP2 | 121.3° | 114.0° |
| O5' | C5' | C4' | 108.3° | 109.5° |
| O5' | C5' | H5' | 109.9° | 109.5° |
| O5' | C5' | H5'' | 110.1° | 109.5° |
| C4 | N9 | C8 | 106.8° | 107.5° |
| C4 | N9 | C1' | 128.1° | 126.3° |
| N9 | C4 | N3 | 127.6° | 134.2° |
| N9 | C4 | C5 | 104.1° | 106.1° |
| C8 | N9 | C1' | 125.0° | 126.2° |
| N9 | C8 | N7 | 114.9° | 109.8° |
| N9 | C8 | H8 | 122.6° | 125.1° |
| N9 | C1' | C2' | 118.2° | 110.4° |
| N9 | C1' | O4' | 105.4° | 110.4° |
| N9 | C1' | H1' | 105.1° | 110.3° |
| N3 | C4 | C5 | 128.3° | 119.7° |
| C4 | N3 | C2 | 113.2° | 121.1° |
| C4 | C5 | C6 | 118.6° | 118.6° |
| C4 | C5 | N7 | 112.3° | 107.2° |
| N3 | C2 | N2 | 120.4° | 119.0° |
| N3 | C2 | N1 | 123.0° | 122.0° |
| N2 | C2 | N1 | 116.6° | 119.0° |
| C2 | N2 | H21 | 111.4° | 120.0° |
| C2 | N2 | H22 | 124.3° | 120.0° |
| C2 | N1 | C6 | 125.3° | 120.3° |
| C2 | N1 | H1 | 117.4° | 119.9° |
| H21 | N2 | H22 | 124.3° | 120.0° |
| C6 | N1 | H1 | 117.3° | 119.8° |
| N1 | C6 | O6 | 120.4° | 120.8° |
| N1 | C6 | C5 | 111.6° | 118.4° |
| O6 | C6 | C5 | 127.9° | 120.8° |
| C6 | C5 | N7 | 129.1° | 134.1° |
| C5 | N7 | C8 | 102.0° | 109.3° |
| N7 | C8 | H8 | 122.5° | 125.1° |
| C1' | C2' | C3' | 106.6° | 104.1° |
| C1' | C2' | H2' | 110.4° | 110.5° |
| C1' | C2' | H2'' | 111.1° | 110.5° |
| C2' | C1' | O4' | 104.7° | 104.8° |
| C2' | C1' | H1' | 105.8° | 110.4° |
| C3' | C2' | H2' | 110.4° | 110.5° |
| C3' | C2' | H2'' | 111.1° | 110.6° |
| C2' | C3' | C4' | 104.0° | 104.1° |
| C2' | C3' | O3' | 112.1° | 110.5° |
| C2' | C3' | H3' | 111.8° | 110.5° |
| H2' | C2' | H2'' | 107.3° | 110.5° |
| C4' | C5' | H5' | 109.9° | 109.4° |
| C4' | C5' | H5'' | 110.1° | 109.4° |
| C5' | C4' | O4' | 109.0° | 110.4° |
| C5' | C4' | C3' | 112.9° | 110.4° |
| C5' | C4' | H4' | 106.4° | 110.3° |
| H5' | C5' | H5'' | 108.5° | 109.5° |
| O4' | C4' | C3' | 106.0° | 104.8° |
| O4' | C4' | H4' | 113.2° | 110.4° |
| C4' | O4' | C1' | 110.9° | 105.3° |
| C3' | C4' | H4' | 109.4° | 110.4° |
| C4' | C3' | O3' | 110.8° | 110.5° |
| C4' | C3' | H3' | 113.0° | 110.5° |
| O4' | C1' | H1' | 118.5° | 110.4° |
| O3' | C3' | H3' | 105.2° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | SE | O5' | 119.1° | 120.0° |
| OP1 | P | SE | OP2 | 129.6° | 120.0° |
| OP1 | P | O5' | OP2 | 161.2° | 119.9° |
| OP1 | P | SE | HS | 147.0° | 180.0° |
| OP1 | P | O5' | C5' | 174.7° | 45.1° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| SE | P | O5' | OP2 | 36.9° | 120.1° |
| SE | P | O5' | C5' | 61.0° | 74.9° |
| SE | P | OP2 | HOP2 | 55.5° | 60.0° |
| O5' | P | SE | HS | 27.9° | 60.0° |
| P | O5' | C5' | C4' | 171.4° | 179.9° |
| P | O5' | C5' | H5' | 51.4° | 60.1° |
| P | O5' | C5' | H5'' | 68.2° | 59.9° |
| O5' | P | OP2 | HOP2 | 158.6° | 179.9° |
| OP2 | P | SE | HS | 17.4° | 60.0° |
| OP2 | P | O5' | C5' | 24.1° | 165.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.5° | 120.0° |
| O5' | C5' | H5' | H5'' | 120.5° | 120.1° |
| O5' | C5' | C4' | O4' | 59.7° | 66.4° |
| O5' | C5' | C4' | C3' | 177.2° | 178.2° |
| O5' | C5' | C4' | H4' | 62.8° | 55.8° |
| C4 | N9 | C8 | C1' | 179.4° | 179.8° |
| N9 | C4 | N3 | C5 | 179.4° | 179.9° |
| N9 | C4 | N3 | C2 | 179.9° | 180.0° |
| N9 | C4 | C5 | C6 | 179.5° | 180.0° |
| N9 | C4 | C5 | N7 | 0.0° | 0.0° |
| C4 | N9 | C8 | N7 | 0.4° | 0.1° |
| C4 | N9 | C8 | H8 | 179.5° | 180.0° |
| C4 | N9 | C1' | C2' | 49.3° | 85.0° |
| C4 | N9 | C1' | O4' | 67.1° | 159.6° |
| C4 | N9 | C1' | H1' | 166.9° | 37.3° |
| C8 | N9 | C4 | N3 | 179.7° | 180.0° |
| C8 | N9 | C4 | C5 | 0.2° | 0.0° |
| N9 | C8 | N7 | C5 | 0.4° | 0.1° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| C8 | N9 | C1' | C2' | 131.5° | 95.2° |
| C8 | N9 | C1' | O4' | 112.1° | 20.2° |
| C8 | N9 | C1' | H1' | 13.8° | 142.5° |
| C1' | N9 | C4 | N3 | 0.9° | 0.1° |
| C1' | N9 | C4 | C5 | 179.6° | 179.8° |
| C1' | N9 | C8 | N7 | 179.8° | 179.8° |
| C1' | N9 | C8 | H8 | 0.2° | 0.1° |
| N9 | C1' | C2' | O4' | 116.8° | 118.8° |
| N9 | C1' | C2' | H1' | 117.3° | 122.3° |
| N9 | C1' | C2' | C3' | 104.7° | 142.8° |
| N9 | C1' | C2' | H2' | 135.4° | 98.5° |
| N9 | C1' | C2' | H2'' | 16.5° | 24.1° |
| N9 | C1' | O4' | C4' | 131.1° | 159.4° |
| N9 | C1' | O4' | H1' | 117.2° | 122.3° |
| C4 | N3 | C2 | N2 | 179.7° | 180.0° |
| C4 | N3 | C2 | N1 | 1.2° | 0.1° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| N3 | C4 | C5 | N7 | 179.5° | 179.9° |
| C5 | C4 | N3 | C2 | 0.7° | 0.0° |
| C4 | C5 | C6 | N1 | 0.2° | 0.1° |
| C4 | C5 | C6 | O6 | 179.8° | 180.0° |
| C4 | C5 | C6 | N7 | 179.4° | 180.0° |
| C4 | C5 | N7 | C8 | 0.3° | 0.1° |
| N3 | C2 | N2 | N1 | 179.2° | 179.9° |
| N3 | C2 | N2 | H21 | 180.0° | 0.0° |
| N3 | C2 | N2 | H22 | 0.0° | 180.0° |
| N3 | C2 | N1 | C6 | 1.1° | 0.1° |
| N3 | C2 | N1 | H1 | 178.9° | 180.0° |
| C2 | N2 | H21 | H22 | 180.0° | 180.0° |
| N2 | C2 | N1 | C6 | 179.8° | 180.0° |
| N2 | C2 | N1 | H1 | 0.2° | 0.1° |
| N1 | C2 | N2 | H21 | 0.8° | 179.9° |
| N1 | C2 | N2 | H22 | 179.2° | 0.1° |
| C2 | N1 | C6 | H1 | 180.0° | 179.9° |
| C2 | N1 | C6 | O6 | 179.3° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.1° |
| N1 | C6 | O6 | C5 | 179.5° | 179.9° |
| N1 | C6 | C5 | N7 | 179.6° | 179.9° |
| H1 | N1 | C6 | O6 | 0.7° | 0.1° |
| H1 | N1 | C6 | C5 | 179.7° | 180.0° |
| O6 | C6 | C5 | N7 | 0.9° | 0.0° |
| C6 | C5 | N7 | C8 | 179.6° | 180.0° |
| C5 | N7 | C8 | H8 | 179.6° | 180.0° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'' | 121.1° | 118.7° |
| C1' | C2' | H2' | H2'' | 121.2° | 122.6° |
| C2' | C1' | O4' | C4' | 5.8° | 40.5° |
| C1' | C2' | C3' | C4' | 24.8° | 0.0° |
| C2' | C1' | O4' | H1' | 117.5° | 118.9° |
| C1' | C2' | C3' | O3' | 144.6° | 118.7° |
| C1' | C2' | C3' | H3' | 97.5° | 118.7° |
| C3' | C2' | H2' | H2'' | 121.2° | 122.7° |
| C2' | C3' | C4' | C5' | 147.5° | 142.8° |
| C2' | C3' | C4' | O4' | 28.2° | 23.9° |
| C2' | C3' | C4' | O3' | 120.7° | 118.7° |
| C2' | C3' | C4' | H3' | 121.5° | 118.6° |
| C2' | C3' | C4' | H4' | 94.2° | 94.9° |
| C3' | C2' | C1' | O4' | 12.2° | 24.0° |
| C3' | C2' | C1' | H1' | 138.1° | 94.9° |
| C2' | C3' | O3' | H3' | 121.7° | 122.6° |
| C2' | C3' | O3' | HO3' | 56.0° | 61.4° |
| H2' | C2' | C3' | C4' | 95.2° | 118.7° |
| H2' | C2' | C1' | O4' | 107.8° | 142.6° |
| H2' | C2' | C1' | H1' | 18.1° | 23.7° |
| H2' | C2' | C3' | O3' | 24.6° | 0.0° |
| H2' | C2' | C3' | H3' | 142.5° | 122.7° |
| H2'' | C2' | C3' | C4' | 145.9° | 118.6° |
| H2'' | C2' | C1' | O4' | 133.3° | 94.7° |
| H2'' | C2' | C1' | H1' | 100.8° | 146.4° |
| H2'' | C2' | C3' | O3' | 94.3° | 122.7° |
| H2'' | C2' | C3' | H3' | 23.6° | 0.0° |
| C4' | C5' | H5' | H5'' | 120.4° | 119.9° |
| C5' | C4' | O4' | C3' | 121.8° | 118.9° |
| C5' | C4' | O4' | H4' | 118.2° | 122.2° |
| C5' | C4' | C3' | H4' | 118.3° | 122.3° |
| C5' | C4' | O4' | C1' | 143.5° | 159.3° |
| C5' | C4' | C3' | O3' | 91.8° | 98.5° |
| C5' | C4' | C3' | H3' | 26.0° | 24.2° |
| H5' | C5' | C4' | O4' | 60.3° | 53.6° |
| H5' | C5' | C4' | C3' | 57.2° | 61.8° |
| H5' | C5' | C4' | H4' | 177.2° | 175.8° |
| H5'' | C5' | C4' | O4' | 179.8° | 173.5° |
| H5'' | C5' | C4' | C3' | 62.3° | 58.2° |
| H5'' | C5' | C4' | H4' | 57.7° | 64.2° |
| O4' | C4' | C3' | H4' | 122.4° | 118.8° |
| C4' | O4' | C1' | H1' | 111.7° | 78.4° |
| O4' | C4' | C3' | O3' | 148.9° | 142.6° |
| O4' | C4' | C3' | H3' | 93.3° | 94.7° |
| C3' | C4' | O4' | C1' | 21.7° | 40.5° |
| C4' | C3' | O3' | H3' | 122.5° | 122.7° |
| C4' | C3' | O3' | HO3' | 171.8° | 176.1° |
| H4' | C4' | O4' | C1' | 98.3° | 78.4° |
| H4' | C4' | C3' | O3' | 26.5° | 23.8° |
| H4' | C4' | C3' | H3' | 144.3° | 146.5° |
| H3' | C3' | O3' | HO3' | 65.7° | 61.2° |
