GMP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.33Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.33Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.39Å | |
| C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.40Å | |
| N1 | C2 | sing | 1.36Å | 1.40Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.33Å | |
| C2 | N3 | doub | 1.31Å | 1.34Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| N2 | HN22 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.34Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | HO5' | 109.5° | 114.0° |
| O5' | C5' | C4' | 112.0° | 109.5° |
| O5' | C5' | H5'1 | 108.6° | 109.5° |
| O5' | C5' | H5'2 | 108.1° | 109.4° |
| C4' | C5' | H5'1 | 108.6° | 109.5° |
| C4' | C5' | H5'2 | 108.0° | 109.5° |
| C5' | C4' | O4' | 109.3° | 109.9° |
| C5' | C4' | C3' | 112.2° | 109.9° |
| C5' | C4' | H4' | 106.2° | 109.9° |
| H5'1 | C5' | H5'2 | 111.5° | 109.4° |
| O4' | C4' | C3' | 104.2° | 107.3° |
| O4' | C4' | H4' | 113.9° | 109.9° |
| C4' | O4' | C1' | 108.5° | 107.0° |
| C3' | C4' | H4' | 111.1° | 110.0° |
| C4' | C3' | O3' | 110.1° | 110.5° |
| C4' | C3' | C2' | 99.9° | 104.2° |
| C4' | C3' | H3' | 115.0° | 110.5° |
| O4' | C1' | C2' | 106.7° | 103.5° |
| O4' | C1' | N9 | 107.2° | 110.6° |
| O4' | C1' | H1' | 113.8° | 110.6° |
| O3' | C3' | C2' | 109.1° | 110.5° |
| O3' | C3' | H3' | 106.7° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| C2' | C3' | H3' | 115.9° | 110.6° |
| C3' | C2' | O2' | 110.7° | 110.9° |
| C3' | C2' | C1' | 100.8° | 102.1° |
| C3' | C2' | H2' | 113.9° | 111.0° |
| O2' | C2' | C1' | 108.6° | 110.9° |
| O2' | C2' | H2' | 106.8° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 113.9° |
| C1' | C2' | H2' | 115.9° | 111.0° |
| C2' | C1' | N9 | 112.4° | 110.6° |
| C2' | C1' | H1' | 108.7° | 110.6° |
| N9 | C1' | H1' | 108.2° | 110.7° |
| C1' | N9 | C8 | 127.7° | 126.3° |
| C1' | N9 | C4 | 124.1° | 126.2° |
| C8 | N9 | C4 | 108.1° | 107.5° |
| N9 | C8 | N7 | 109.3° | 109.8° |
| N9 | C8 | H8 | 125.3° | 125.1° |
| N9 | C4 | C5 | 107.4° | 106.1° |
| N9 | C4 | N3 | 130.7° | 134.2° |
| N7 | C8 | H8 | 125.4° | 125.1° |
| C8 | N7 | C5 | 108.3° | 109.3° |
| N7 | C5 | C6 | 134.6° | 134.2° |
| N7 | C5 | C4 | 106.9° | 107.3° |
| C6 | C5 | C4 | 118.5° | 118.6° |
| C5 | C6 | O6 | 121.8° | 120.8° |
| C5 | C6 | N1 | 118.8° | 118.4° |
| C5 | C4 | N3 | 121.9° | 119.7° |
| O6 | C6 | N1 | 119.3° | 120.8° |
| C6 | N1 | C2 | 120.1° | 120.3° |
| C6 | N1 | HN1 | 119.9° | 119.9° |
| C2 | N1 | HN1 | 120.0° | 119.8° |
| N1 | C2 | N2 | 120.1° | 119.1° |
| N1 | C2 | N3 | 119.5° | 121.9° |
| N2 | C2 | N3 | 120.5° | 119.0° |
| C2 | N2 | HN21 | 109.5° | 120.0° |
| C2 | N2 | HN22 | 109.5° | 120.0° |
| C2 | N3 | C4 | 121.3° | 121.1° |
| HN21 | N2 | HN22 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 118.9° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.0° | 119.9° |
| O5' | C5' | C4' | O4' | 61.2° | 66.5° |
| O5' | C5' | C4' | C3' | 53.8° | 175.7° |
| O5' | C5' | C4' | H4' | 175.4° | 54.5° |
| HO5' | O5' | C5' | C4' | 127.1° | 180.0° |
| HO5' | O5' | C5' | H5'1 | 7.1° | 59.9° |
| HO5' | O5' | C5' | H5'2 | 114.0° | 60.0° |
| C4' | C5' | H5'1 | H5'2 | 118.9° | 120.1° |
| C5' | C4' | O4' | C3' | 120.1° | 119.4° |
| C5' | C4' | O4' | H4' | 118.6° | 121.0° |
| C5' | C4' | C3' | H4' | 118.7° | 121.1° |
| C5' | C4' | O4' | C1' | 145.1° | 145.9° |
| C5' | C4' | C3' | O3' | 85.3° | 119.8° |
| C5' | C4' | C3' | C2' | 160.0° | 121.4° |
| C5' | C4' | C3' | H3' | 35.3° | 2.7° |
| H5'1 | C5' | C4' | O4' | 178.7° | 53.5° |
| H5'1 | C5' | C4' | C3' | 66.2° | 64.3° |
| H5'1 | C5' | C4' | H4' | 55.4° | 174.5° |
| H5'2 | C5' | C4' | O4' | 57.7° | 173.5° |
| H5'2 | C5' | C4' | C3' | 172.7° | 55.7° |
| H5'2 | C5' | C4' | H4' | 65.7° | 65.4° |
| O4' | C4' | C3' | H4' | 123.1° | 119.5° |
| O4' | C4' | C3' | O3' | 156.5° | 120.7° |
| O4' | C4' | C3' | C2' | 41.9° | 2.0° |
| O4' | C4' | C3' | H3' | 82.9° | 116.8° |
| C4' | O4' | C1' | C2' | 2.3° | 40.1° |
| C4' | O4' | C1' | N9 | 118.4° | 158.5° |
| C4' | O4' | C1' | H1' | 122.1° | 78.4° |
| C3' | C4' | O4' | C1' | 25.1° | 26.5° |
| C4' | C3' | O3' | C2' | 108.7° | 114.8° |
| C4' | C3' | O3' | H3' | 125.4° | 122.5° |
| C4' | C3' | C2' | H3' | 124.1° | 118.7° |
| C4' | C3' | O3' | HO3' | 70.9° | 61.4° |
| C4' | C3' | C2' | O2' | 73.2° | 139.1° |
| C4' | C3' | C2' | C1' | 41.6° | 20.9° |
| C4' | C3' | C2' | H2' | 166.5° | 97.4° |
| H4' | C4' | O4' | C1' | 96.2° | 93.0° |
| H4' | C4' | C3' | O3' | 33.4° | 1.3° |
| H4' | C4' | C3' | C2' | 81.2° | 117.5° |
| H4' | C4' | C3' | H3' | 154.0° | 123.8° |
| O4' | C1' | C2' | C3' | 28.3° | 37.1° |
| O4' | C1' | C2' | O2' | 88.1° | 155.2° |
| O4' | C1' | C2' | N9 | 117.2° | 118.5° |
| O4' | C1' | C2' | H1' | 123.1° | 118.5° |
| O4' | C1' | C2' | H2' | 151.8° | 81.2° |
| O4' | C1' | N9 | H1' | 123.1° | 123.0° |
| O4' | C1' | N9 | C8 | 33.4° | 23.5° |
| O4' | C1' | N9 | C4 | 143.6° | 156.7° |
| O3' | C3' | C2' | H3' | 120.4° | 122.6° |
| O3' | C3' | C2' | O2' | 42.3° | 20.4° |
| O3' | C3' | C2' | C1' | 157.1° | 97.8° |
| O3' | C3' | C2' | H2' | 78.1° | 143.9° |
| C2' | C3' | O3' | HO3' | 37.8° | 176.2° |
| C3' | C2' | O2' | C1' | 109.8° | 112.7° |
| C3' | C2' | O2' | H2' | 124.5° | 123.6° |
| C3' | C2' | C1' | H2' | 123.4° | 118.3° |
| C3' | C2' | O2' | HO2' | 149.8° | 61.4° |
| C3' | C2' | C1' | N9 | 88.9° | 155.5° |
| C3' | C2' | C1' | H1' | 151.4° | 81.4° |
| H3' | C3' | O3' | HO3' | 163.6° | 61.1° |
| H3' | C3' | C2' | O2' | 162.7° | 102.2° |
| H3' | C3' | C2' | C1' | 82.5° | 139.7° |
| H3' | C3' | C2' | H2' | 42.3° | 21.3° |
| O2' | C2' | C1' | H2' | 120.2° | 123.5° |
| O2' | C2' | C1' | N9 | 154.7° | 86.3° |
| O2' | C2' | C1' | H1' | 35.0° | 36.7° |
| C1' | C2' | O2' | HO2' | 40.0° | 174.1° |
| C2' | C1' | N9 | H1' | 120.0° | 123.0° |
| C2' | C1' | N9 | C8 | 83.5° | 90.5° |
| C2' | C1' | N9 | C4 | 99.5° | 89.2° |
| H2' | C2' | O2' | HO2' | 85.6° | 62.2° |
| H2' | C2' | C1' | N9 | 34.6° | 37.2° |
| H2' | C2' | C1' | H1' | 85.2° | 160.3° |
| C1' | N9 | C8 | C4 | 177.4° | 179.8° |
| C1' | N9 | C8 | N7 | 177.7° | 180.0° |
| C1' | N9 | C8 | H8 | 2.3° | 0.0° |
| C1' | N9 | C4 | C5 | 178.0° | 179.9° |
| C1' | N9 | C4 | N3 | 0.6° | 0.7° |
| H1' | C1' | N9 | C8 | 156.4° | 146.5° |
| H1' | C1' | N9 | C4 | 20.6° | 33.7° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| C8 | N9 | C4 | C5 | 0.5° | 0.4° |
| C8 | N9 | C4 | N3 | 178.1° | 179.5° |
| C4 | N9 | C8 | N7 | 0.3° | 0.3° |
| C4 | N9 | C8 | H8 | 179.7° | 179.8° |
| N9 | C4 | C5 | N7 | 0.4° | 0.4° |
| N9 | C4 | C5 | C6 | 179.0° | 179.9° |
| N9 | C4 | C5 | N3 | 178.7° | 179.3° |
| N9 | C4 | N3 | C2 | 178.3° | 179.6° |
| C8 | N7 | C5 | C6 | 178.5° | 179.9° |
| C8 | N7 | C5 | C4 | 0.2° | 0.2° |
| H8 | C8 | N7 | C5 | 180.0° | 180.0° |
| N7 | C5 | C6 | C4 | 178.1° | 179.7° |
| N7 | C5 | C6 | O6 | 3.9° | 0.0° |
| N7 | C5 | C6 | N1 | 177.5° | 180.0° |
| N7 | C5 | C4 | N3 | 178.2° | 179.7° |
| C5 | C6 | O6 | N1 | 178.6° | 180.0° |
| C5 | C6 | N1 | C2 | 0.4° | 0.0° |
| C5 | C6 | N1 | HN1 | 179.6° | 180.0° |
| C6 | C5 | C4 | N3 | 0.3° | 0.6° |
| C4 | C5 | C6 | O6 | 178.1° | 179.7° |
| C4 | C5 | C6 | N1 | 0.5° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.6° |
| O6 | C6 | N1 | C2 | 178.2° | 180.0° |
| O6 | C6 | N1 | HN1 | 1.8° | 0.1° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.9° |
| C6 | N1 | C2 | N2 | 179.9° | 180.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.1° |
| N1 | C2 | N2 | N3 | 179.9° | 180.0° |
| N1 | C2 | N2 | HN21 | 21.4° | 0.0° |
| N1 | C2 | N2 | HN22 | 98.6° | 179.9° |
| N1 | C2 | N3 | C4 | 0.2° | 0.3° |
| HN1 | N1 | C2 | N2 | 0.2° | 0.1° |
| HN1 | N1 | C2 | N3 | 179.9° | 180.0° |
| C2 | N2 | HN21 | HN22 | 120.0° | 179.9° |
| N2 | C2 | N3 | C4 | 179.9° | 179.7° |
| N3 | C2 | N2 | HN21 | 158.7° | 180.0° |
| N3 | C2 | N2 | HN22 | 81.3° | 0.0° |
