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GMP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5'C5'sing1.43Å1.43Å
O5'HO5'sing0.97Å0.95Å
C5'C4'sing1.53Å1.53Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.53Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.53Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.48Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.36Å1.33ÅAromatic
C5C6sing1.41Å1.39Å
C5C4doub1.40Å1.39ÅAromatic
C6O6doub1.22Å1.23Å
C6N1sing1.35Å1.40Å
N1C2sing1.36Å1.40Å
N1HN1sing0.97Å1.00Å
C2N2sing1.37Å1.33Å
C2N3doub1.31Å1.34Å
N2HN21sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
N3C4sing1.34Å1.34Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'O5'HO5'109.5°114.0°
O5'C5'C4'112.0°109.5°
O5'C5'H5'1108.6°109.5°
O5'C5'H5'2108.1°109.4°
C4'C5'H5'1108.6°109.5°
C4'C5'H5'2108.0°109.5°
C5'C4'O4'109.3°109.9°
C5'C4'C3'112.2°109.9°
C5'C4'H4'106.2°109.9°
H5'1C5'H5'2111.5°109.4°
O4'C4'C3'104.2°107.3°
O4'C4'H4'113.9°109.9°
C4'O4'C1'108.5°107.0°
C3'C4'H4'111.1°110.0°
C4'C3'O3'110.1°110.5°
C4'C3'C2'99.9°104.2°
C4'C3'H3'115.0°110.5°
O4'C1'C2'106.7°103.5°
O4'C1'N9107.2°110.6°
O4'C1'H1'113.8°110.6°
O3'C3'C2'109.1°110.5°
O3'C3'H3'106.7°110.4°
C3'O3'HO3'109.5°114.1°
C2'C3'H3'115.9°110.6°
C3'C2'O2'110.7°110.9°
C3'C2'C1'100.8°102.1°
C3'C2'H2'113.9°111.0°
O2'C2'C1'108.6°110.9°
O2'C2'H2'106.8°110.8°
C2'O2'HO2'109.5°113.9°
C1'C2'H2'115.9°111.0°
C2'C1'N9112.4°110.6°
C2'C1'H1'108.7°110.6°
N9C1'H1'108.2°110.7°
C1'N9C8127.7°126.3°
C1'N9C4124.1°126.2°
C8N9C4108.1°107.5°
N9C8N7109.3°109.8°
N9C8H8125.3°125.1°
N9C4C5107.4°106.1°
N9C4N3130.7°134.2°
N7C8H8125.4°125.1°
C8N7C5108.3°109.3°
N7C5C6134.6°134.2°
N7C5C4106.9°107.3°
C6C5C4118.5°118.6°
C5C6O6121.8°120.8°
C5C6N1118.8°118.4°
C5C4N3121.9°119.7°
O6C6N1119.3°120.8°
C6N1C2120.1°120.3°
C6N1HN1119.9°119.9°
C2N1HN1120.0°119.8°
N1C2N2120.1°119.1°
N1C2N3119.5°121.9°
N2C2N3120.5°119.0°
C2N2HN21109.5°120.0°
C2N2HN22109.5°120.0°
C2N3C4121.3°121.1°
HN21N2HN22109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5'C5'C4'H5'1120.0°120.0°
O5'C5'C4'H5'2118.9°120.0°
O5'C5'H5'1H5'2119.0°119.9°
O5'C5'C4'O4'61.2°66.5°
O5'C5'C4'C3'53.8°175.7°
O5'C5'C4'H4'175.4°54.5°
HO5'O5'C5'C4'127.1°180.0°
HO5'O5'C5'H5'17.1°59.9°
HO5'O5'C5'H5'2114.0°60.0°
C4'C5'H5'1H5'2118.9°120.1°
C5'C4'O4'C3'120.1°119.4°
C5'C4'O4'H4'118.6°121.0°
C5'C4'C3'H4'118.7°121.1°
C5'C4'O4'C1'145.1°145.9°
C5'C4'C3'O3'85.3°119.8°
C5'C4'C3'C2'160.0°121.4°
C5'C4'C3'H3'35.3°2.7°
H5'1C5'C4'O4'178.7°53.5°
H5'1C5'C4'C3'66.2°64.3°
H5'1C5'C4'H4'55.4°174.5°
H5'2C5'C4'O4'57.7°173.5°
H5'2C5'C4'C3'172.7°55.7°
H5'2C5'C4'H4'65.7°65.4°
O4'C4'C3'H4'123.1°119.5°
O4'C4'C3'O3'156.5°120.7°
O4'C4'C3'C2'41.9°2.0°
O4'C4'C3'H3'82.9°116.8°
C4'O4'C1'C2'2.3°40.1°
C4'O4'C1'N9118.4°158.5°
C4'O4'C1'H1'122.1°78.4°
C3'C4'O4'C1'25.1°26.5°
C4'C3'O3'C2'108.7°114.8°
C4'C3'O3'H3'125.4°122.5°
C4'C3'C2'H3'124.1°118.7°
C4'C3'O3'HO3'70.9°61.4°
C4'C3'C2'O2'73.2°139.1°
C4'C3'C2'C1'41.6°20.9°
C4'C3'C2'H2'166.5°97.4°
H4'C4'O4'C1'96.2°93.0°
H4'C4'C3'O3'33.4°1.3°
H4'C4'C3'C2'81.2°117.5°
H4'C4'C3'H3'154.0°123.8°
O4'C1'C2'C3'28.3°37.1°
O4'C1'C2'O2'88.1°155.2°
O4'C1'C2'N9117.2°118.5°
O4'C1'C2'H1'123.1°118.5°
O4'C1'C2'H2'151.8°81.2°
O4'C1'N9H1'123.1°123.0°
O4'C1'N9C833.4°23.5°
O4'C1'N9C4143.6°156.7°
O3'C3'C2'H3'120.4°122.6°
O3'C3'C2'O2'42.3°20.4°
O3'C3'C2'C1'157.1°97.8°
O3'C3'C2'H2'78.1°143.9°
C2'C3'O3'HO3'37.8°176.2°
C3'C2'O2'C1'109.8°112.7°
C3'C2'O2'H2'124.5°123.6°
C3'C2'C1'H2'123.4°118.3°
C3'C2'O2'HO2'149.8°61.4°
C3'C2'C1'N988.9°155.5°
C3'C2'C1'H1'151.4°81.4°
H3'C3'O3'HO3'163.6°61.1°
H3'C3'C2'O2'162.7°102.2°
H3'C3'C2'C1'82.5°139.7°
H3'C3'C2'H2'42.3°21.3°
O2'C2'C1'H2'120.2°123.5°
O2'C2'C1'N9154.7°86.3°
O2'C2'C1'H1'35.0°36.7°
C1'C2'O2'HO2'40.0°174.1°
C2'C1'N9H1'120.0°123.0°
C2'C1'N9C883.5°90.5°
C2'C1'N9C499.5°89.2°
H2'C2'O2'HO2'85.6°62.2°
H2'C2'C1'N934.6°37.2°
H2'C2'C1'H1'85.2°160.3°
C1'N9C8C4177.4°179.8°
C1'N9C8N7177.7°180.0°
C1'N9C8H82.3°0.0°
C1'N9C4C5178.0°179.9°
C1'N9C4N30.6°0.7°
H1'C1'N9C8156.4°146.5°
H1'C1'N9C420.6°33.7°
N9C8N7H8180.0°180.0°
N9C8N7C50.0°0.0°
C8N9C4C50.5°0.4°
C8N9C4N3178.1°179.5°
C4N9C8N70.3°0.3°
C4N9C8H8179.7°179.8°
N9C4C5N70.4°0.4°
N9C4C5C6179.0°179.9°
N9C4C5N3178.7°179.3°
N9C4N3C2178.3°179.6°
C8N7C5C6178.5°179.9°
C8N7C5C40.2°0.2°
H8C8N7C5180.0°180.0°
N7C5C6C4178.1°179.7°
N7C5C6O63.9°0.0°
N7C5C6N1177.5°180.0°
N7C5C4N3178.2°179.7°
C5C6O6N1178.6°180.0°
C5C6N1C20.4°0.0°
C5C6N1HN1179.6°180.0°
C6C5C4N30.3°0.6°
C4C5C6O6178.1°179.7°
C4C5C6N10.5°0.3°
C5C4N3C20.0°0.6°
O6C6N1C2178.2°180.0°
O6C6N1HN11.8°0.1°
C6N1C2HN1180.0°179.9°
C6N1C2N2179.9°180.0°
C6N1C2N30.0°0.1°
N1C2N2N3179.9°180.0°
N1C2N2HN2121.4°0.0°
N1C2N2HN2298.6°179.9°
N1C2N3C40.2°0.3°
HN1N1C2N20.2°0.1°
HN1N1C2N3179.9°180.0°
C2N2HN21HN22120.0°179.9°
N2C2N3C4179.9°179.7°
N3C2N2HN21158.7°180.0°
N3C2N2HN2281.3°0.0°

225158

PDB entries from 2024-09-18

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