GMA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
N | H | sing | 1.01Å | 1.01Å | |
N | H2 | sing | 1.01Å | 1.02Å | |
CA | CD | sing | 1.51Å | 1.54Å | |
CA | CB | sing | 1.53Å | 1.54Å | |
CA | HA | sing | 1.09Å | 1.09Å | |
CD | O1 | doub | 1.21Å | 1.23Å | |
CD | N2 | sing | 1.35Å | 1.33Å | |
CB | CG | sing | 1.53Å | 1.54Å | |
CB | HB2 | sing | 1.09Å | 1.09Å | |
CB | HB3 | sing | 1.09Å | 1.09Å | |
CG | C | sing | 1.51Å | 1.53Å | |
CG | HG2 | sing | 1.09Å | 1.09Å | |
CG | HG3 | sing | 1.09Å | 1.09Å | |
C | O | doub | 1.21Å | 1.25Å | |
C | OXT | sing | 1.34Å | 1.25Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
N2 | HN2A | sing | 0.97Å | 1.01Å | |
N2 | HN1 | sing | 0.97Å | 1.01Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | H | 116.1° | 106.7° |
CA | N | H2 | 111.9° | 106.7° |
N | CA | CD | 110.6° | 109.4° |
N | CA | CB | 108.4° | 109.5° |
N | CA | HA | 109.9° | 109.4° |
H | N | H2 | 24.0° | 106.6° |
CD | CA | CB | 112.6° | 109.5° |
CD | CA | HA | 108.2° | 109.5° |
CA | CD | O1 | 121.2° | 120.1° |
CA | CD | N2 | 117.6° | 120.0° |
CB | CA | HA | 107.1° | 109.5° |
CA | CB | CG | 113.0° | 109.6° |
CA | CB | HB2 | 108.8° | 109.5° |
CA | CB | HB3 | 110.1° | 109.5° |
O1 | CD | N2 | 121.1° | 119.9° |
CD | N2 | HN2A | 119.0° | 120.1° |
CD | N2 | HN1 | 119.4° | 120.0° |
CG | CB | HB2 | 108.5° | 109.4° |
CG | CB | HB3 | 108.5° | 109.5° |
CB | CG | C | 111.8° | 109.6° |
CB | CG | HG2 | 110.2° | 109.4° |
CB | CG | HG3 | 109.5° | 109.5° |
HB2 | CB | HB3 | 107.9° | 109.4° |
C | CG | HG2 | 107.4° | 109.4° |
C | CG | HG3 | 109.5° | 109.5° |
CG | C | O | 116.9° | 120.0° |
CG | C | OXT | 117.4° | 120.1° |
HG2 | CG | HG3 | 108.3° | 109.5° |
O | C | OXT | 125.7° | 119.9° |
C | OXT | HXT | 117.4° | 120.1° |
HN2A | N2 | HN1 | 121.4° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | H | H2 | 85.3° | 113.8° |
N | CA | CD | CB | 121.5° | 120.0° |
N | CA | CD | HA | 120.4° | 119.9° |
N | CA | CB | HA | 118.5° | 120.0° |
N | CA | CD | O1 | 123.1° | 30.0° |
N | CA | CD | N2 | 56.6° | 150.0° |
N | CA | CB | CG | 178.7° | 60.0° |
N | CA | CB | HB2 | 58.2° | 60.0° |
N | CA | CB | HB3 | 59.9° | 179.9° |
H | N | CA | CD | 80.6° | 173.8° |
H | N | CA | CB | 43.2° | 53.7° |
H | N | CA | HA | 160.0° | 66.3° |
H2 | N | CA | CD | 54.8° | 60.1° |
H2 | N | CA | CB | 69.1° | 60.0° |
H2 | N | CA | HA | 174.2° | 180.0° |
CD | CA | CB | HA | 118.8° | 120.1° |
CA | CD | O1 | N2 | 179.7° | 180.0° |
CD | CA | CB | CG | 58.6° | 179.9° |
CD | CA | CB | HB2 | 179.2° | 59.9° |
CD | CA | CB | HB3 | 62.8° | 59.9° |
CA | CD | N2 | HN2A | 177.4° | 179.9° |
CA | CD | N2 | HN1 | 1.5° | 0.0° |
CB | CA | CD | O1 | 115.5° | 90.0° |
CB | CA | CD | N2 | 64.8° | 90.0° |
CA | CB | CG | HB2 | 120.7° | 120.0° |
CA | CB | CG | HB3 | 122.3° | 120.1° |
CA | CB | HB2 | HB3 | 119.4° | 120.0° |
CA | CB | CG | C | 179.3° | 180.0° |
CA | CB | CG | HG2 | 59.9° | 60.0° |
CA | CB | CG | HG3 | 59.2° | 60.0° |
HA | CA | CD | O1 | 2.7° | 149.9° |
HA | CA | CD | N2 | 177.0° | 30.0° |
HA | CA | CB | CG | 60.2° | 60.0° |
HA | CA | CB | HB2 | 60.3° | 180.0° |
HA | CA | CB | HB3 | 178.4° | 60.1° |
O1 | CD | N2 | HN2A | 2.2° | 0.1° |
O1 | CD | N2 | HN1 | 178.2° | 180.0° |
CD | N2 | HN2A | HN1 | 175.9° | 180.0° |
CG | CB | HB2 | HB3 | 117.4° | 120.0° |
CB | CG | C | HG2 | 121.0° | 119.9° |
CB | CG | C | HG3 | 121.6° | 120.1° |
CB | CG | HG2 | HG3 | 119.7° | 120.0° |
CB | CG | C | O | 67.7° | 0.0° |
CB | CG | C | OXT | 111.9° | 180.0° |
HB2 | CB | CG | C | 60.1° | 60.0° |
HB2 | CB | CG | HG2 | 179.5° | 180.0° |
HB2 | CB | CG | HG3 | 61.5° | 60.1° |
HB3 | CB | CG | C | 57.0° | 59.9° |
HB3 | CB | CG | HG2 | 62.5° | 60.1° |
HB3 | CB | CG | HG3 | 178.5° | 179.9° |
C | CG | HG2 | HG3 | 118.2° | 120.0° |
CG | C | O | OXT | 179.6° | 180.0° |
CG | C | OXT | HXT | 180.0° | 180.0° |
HG2 | CG | C | O | 53.3° | 120.0° |
HG2 | CG | C | OXT | 127.0° | 60.0° |
HG3 | CG | C | O | 170.8° | 120.0° |
HG3 | CG | C | OXT | 9.6° | 60.0° |
O | C | OXT | HXT | 0.4° | 0.0° |