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Summary Geometry Related PDB entries

GMA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.46Å
N	H	sing	1.01Å	1.01Å
N	H2	sing	1.01Å	1.02Å
CA	CD	sing	1.51Å	1.54Å
CA	CB	sing	1.53Å	1.54Å
CA	HA	sing	1.09Å	1.09Å
CD	O1	doub	1.21Å	1.23Å
CD	N2	sing	1.35Å	1.33Å
CB	CG	sing	1.53Å	1.54Å
CB	HB2	sing	1.09Å	1.09Å
CB	HB3	sing	1.09Å	1.09Å
CG	C	sing	1.51Å	1.53Å
CG	HG2	sing	1.09Å	1.09Å
CG	HG3	sing	1.09Å	1.09Å
C	O	doub	1.21Å	1.25Å
C	OXT	sing	1.34Å	1.25Å
OXT	HXT	sing	0.97Å	0.95Å
N2	HN2A	sing	0.97Å	1.01Å
N2	HN1	sing	0.97Å	1.01Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	116.1°	106.7°
CA	N	H2	111.9°	106.7°
N	CA	CD	110.6°	109.4°
N	CA	CB	108.4°	109.5°
N	CA	HA	109.9°	109.4°
H	N	H2	24.0°	106.6°
CD	CA	CB	112.6°	109.5°
CD	CA	HA	108.2°	109.5°
CA	CD	O1	121.2°	120.1°
CA	CD	N2	117.6°	120.0°
CB	CA	HA	107.1°	109.5°
CA	CB	CG	113.0°	109.6°
CA	CB	HB2	108.8°	109.5°
CA	CB	HB3	110.1°	109.5°
O1	CD	N2	121.1°	119.9°
CD	N2	HN2A	119.0°	120.1°
CD	N2	HN1	119.4°	120.0°
CG	CB	HB2	108.5°	109.4°
CG	CB	HB3	108.5°	109.5°
CB	CG	C	111.8°	109.6°
CB	CG	HG2	110.2°	109.4°
CB	CG	HG3	109.5°	109.5°
HB2	CB	HB3	107.9°	109.4°
C	CG	HG2	107.4°	109.4°
C	CG	HG3	109.5°	109.5°
CG	C	O	116.9°	120.0°
CG	C	OXT	117.4°	120.1°
HG2	CG	HG3	108.3°	109.5°
O	C	OXT	125.7°	119.9°
C	OXT	HXT	117.4°	120.1°
HN2A	N2	HN1	121.4°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	85.3°	113.8°
N	CA	CD	CB	121.5°	120.0°
N	CA	CD	HA	120.4°	119.9°
N	CA	CB	HA	118.5°	120.0°
N	CA	CD	O1	123.1°	30.0°
N	CA	CD	N2	56.6°	150.0°
N	CA	CB	CG	178.7°	60.0°
N	CA	CB	HB2	58.2°	60.0°
N	CA	CB	HB3	59.9°	179.9°
H	N	CA	CD	80.6°	173.8°
H	N	CA	CB	43.2°	53.7°
H	N	CA	HA	160.0°	66.3°
H2	N	CA	CD	54.8°	60.1°
H2	N	CA	CB	69.1°	60.0°
H2	N	CA	HA	174.2°	180.0°
CD	CA	CB	HA	118.8°	120.1°
CA	CD	O1	N2	179.7°	180.0°
CD	CA	CB	CG	58.6°	179.9°
CD	CA	CB	HB2	179.2°	59.9°
CD	CA	CB	HB3	62.8°	59.9°
CA	CD	N2	HN2A	177.4°	179.9°
CA	CD	N2	HN1	1.5°	0.0°
CB	CA	CD	O1	115.5°	90.0°
CB	CA	CD	N2	64.8°	90.0°
CA	CB	CG	HB2	120.7°	120.0°
CA	CB	CG	HB3	122.3°	120.1°
CA	CB	HB2	HB3	119.4°	120.0°
CA	CB	CG	C	179.3°	180.0°
CA	CB	CG	HG2	59.9°	60.0°
CA	CB	CG	HG3	59.2°	60.0°
HA	CA	CD	O1	2.7°	149.9°
HA	CA	CD	N2	177.0°	30.0°
HA	CA	CB	CG	60.2°	60.0°
HA	CA	CB	HB2	60.3°	180.0°
HA	CA	CB	HB3	178.4°	60.1°
O1	CD	N2	HN2A	2.2°	0.1°
O1	CD	N2	HN1	178.2°	180.0°
CD	N2	HN2A	HN1	175.9°	180.0°
CG	CB	HB2	HB3	117.4°	120.0°
CB	CG	C	HG2	121.0°	119.9°
CB	CG	C	HG3	121.6°	120.1°
CB	CG	HG2	HG3	119.7°	120.0°
CB	CG	C	O	67.7°	0.0°
CB	CG	C	OXT	111.9°	180.0°
HB2	CB	CG	C	60.1°	60.0°
HB2	CB	CG	HG2	179.5°	180.0°
HB2	CB	CG	HG3	61.5°	60.1°
HB3	CB	CG	C	57.0°	59.9°
HB3	CB	CG	HG2	62.5°	60.1°
HB3	CB	CG	HG3	178.5°	179.9°
C	CG	HG2	HG3	118.2°	120.0°
CG	C	O	OXT	179.6°	180.0°
CG	C	OXT	HXT	180.0°	180.0°
HG2	CG	C	O	53.3°	120.0°
HG2	CG	C	OXT	127.0°	60.0°
HG3	CG	C	O	170.8°	120.0°
HG3	CG	C	OXT	9.6°	60.0°
O	C	OXT	HXT	0.4°	0.0°

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PDB entries from 2026-02-04

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