GM8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O | doub | 1.21Å | 1.25Å | |
| C | CG | sing | 1.51Å | 1.51Å | |
| CQ | CZ | sing | 1.53Å | 1.52Å | |
| N | CA | sing | 1.47Å | 1.48Å | |
| CG | CZ | sing | 1.53Å | 1.54Å | |
| CG | CB | sing | 1.53Å | 1.54Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | CD1 | sing | 1.53Å | 1.49Å | |
| CB | CD2 | sing | 1.53Å | 1.54Å | |
| CD1 | CE1 | sing | 1.53Å | 1.52Å | |
| CD2 | CE2 | sing | 1.53Å | 1.52Å | |
| CE1 | CE2 | sing | 1.53Å | 1.52Å | |
| C | OXT | sing | 1.34Å | 1.03Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CZ | HZ1 | sing | 1.09Å | 1.10Å | |
| CZ | HZ2 | sing | 1.09Å | 1.10Å | |
| CQ | HQ3 | sing | 1.09Å | 1.10Å | |
| CQ | HQ2 | sing | 1.09Å | 1.10Å | |
| CQ | HQ1 | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CD1 | HD12 | sing | 1.09Å | 1.10Å | |
| CD1 | HD11 | sing | 1.09Å | 1.10Å | |
| CE1 | HE12 | sing | 1.09Å | 1.10Å | |
| CE1 | HE11 | sing | 1.09Å | 1.10Å | |
| CE2 | HE22 | sing | 1.09Å | 1.10Å | |
| CE2 | HE21 | sing | 1.09Å | 1.10Å | |
| CD2 | HD21 | sing | 1.09Å | 1.10Å | |
| CD2 | HD22 | sing | 1.09Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CG | 117.9° | 120.0° |
| O | C | OXT | 121.0° | 120.0° |
| C | CG | CZ | 109.6° | 109.5° |
| C | CG | CB | 113.7° | 109.5° |
| CG | C | OXT | 121.0° | 120.0° |
| C | CG | HG | 106.7° | 109.5° |
| CQ | CZ | CG | 113.4° | 109.5° |
| CQ | CZ | HZ1 | 108.5° | 109.5° |
| CQ | CZ | HZ2 | 108.5° | 109.5° |
| CZ | CQ | HQ3 | 109.5° | 109.4° |
| CZ | CQ | HQ2 | 109.5° | 109.5° |
| CZ | CQ | HQ1 | 109.5° | 109.4° |
| N | CA | CB | 109.5° | 109.5° |
| N | CA | CD1 | 117.3° | 109.5° |
| N | CA | HA | 106.7° | 109.5° |
| CA | N | H2 | 109.5° | 111.0° |
| CA | N | H | 109.5° | 111.0° |
| CZ | CG | CB | 113.6° | 109.5° |
| CZ | CG | HG | 106.3° | 109.4° |
| CG | CZ | HZ1 | 108.5° | 109.4° |
| CG | CZ | HZ2 | 108.5° | 109.4° |
| CG | CB | CA | 109.2° | 109.5° |
| CG | CB | CD2 | 110.6° | 109.5° |
| CB | CG | HG | 106.3° | 109.5° |
| CG | CB | HB | 108.7° | 109.5° |
| CB | CA | CD1 | 110.4° | 109.5° |
| CA | CB | CD2 | 111.2° | 109.4° |
| CA | CB | HB | 108.5° | 109.5° |
| CB | CA | HA | 105.9° | 109.4° |
| CA | CD1 | CE1 | 109.6° | 109.5° |
| CD1 | CA | HA | 106.4° | 109.5° |
| CA | CD1 | HD12 | 109.4° | 109.5° |
| CA | CD1 | HD11 | 109.4° | 109.4° |
| CB | CD2 | CE2 | 112.1° | 109.5° |
| CD2 | CB | HB | 108.6° | 109.5° |
| CB | CD2 | HD21 | 108.8° | 109.5° |
| CB | CD2 | HD22 | 108.8° | 109.5° |
| CD1 | CE1 | CE2 | 113.5° | 109.5° |
| CE1 | CD1 | HD12 | 109.5° | 109.5° |
| CE1 | CD1 | HD11 | 109.4° | 109.5° |
| CD1 | CE1 | HE12 | 108.5° | 109.5° |
| CD1 | CE1 | HE11 | 108.5° | 109.5° |
| CD2 | CE2 | CE1 | 107.6° | 109.5° |
| CD2 | CE2 | HE22 | 109.9° | 109.5° |
| CD2 | CE2 | HE21 | 109.9° | 109.5° |
| CE2 | CD2 | HD21 | 108.8° | 109.5° |
| CE2 | CD2 | HD22 | 108.8° | 109.5° |
| CE2 | CE1 | HE12 | 108.4° | 109.5° |
| CE2 | CE1 | HE11 | 108.5° | 109.5° |
| CE1 | CE2 | HE22 | 109.9° | 109.5° |
| CE1 | CE2 | HE21 | 109.9° | 109.5° |
| C | OXT | HXT | 109.5° | 117.0° |
| HZ1 | CZ | HZ2 | 109.5° | 109.5° |
| HQ3 | CQ | HQ2 | 109.5° | 109.5° |
| HQ3 | CQ | HQ1 | 109.5° | 109.5° |
| HQ2 | CQ | HQ1 | 109.5° | 109.5° |
| H2 | N | H | 109.4° | 111.0° |
| HD12 | CD1 | HD11 | 109.5° | 109.5° |
| HE12 | CE1 | HE11 | 109.5° | 109.4° |
| HE22 | CE2 | HE21 | 109.5° | 109.4° |
| HD21 | CD2 | HD22 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CG | OXT | 180.0° | 179.7° |
| O | C | CG | CZ | 65.1° | 0.1° |
| O | C | CG | CB | 63.3° | 120.0° |
| O | C | CG | HG | 179.8° | 120.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| C | CG | CZ | CQ | 43.0° | 64.9° |
| C | CG | CZ | CB | 128.4° | 120.0° |
| C | CG | CZ | HG | 115.0° | 120.0° |
| C | CG | CB | HG | 117.1° | 120.0° |
| C | CG | CB | CA | 59.8° | 60.0° |
| C | CG | CB | CD2 | 177.6° | 180.0° |
| C | CG | CZ | HZ1 | 163.6° | 55.1° |
| C | CG | CZ | HZ2 | 77.6° | 175.0° |
| C | CG | CB | HB | 58.4° | 60.0° |
| CG | C | OXT | HXT | 180.0° | 179.7° |
| CQ | CZ | CG | HZ1 | 120.6° | 120.0° |
| CQ | CZ | CG | HZ2 | 120.6° | 120.1° |
| CQ | CZ | CG | CB | 171.4° | 175.0° |
| CQ | CZ | CG | HG | 72.0° | 55.0° |
| CQ | CZ | HZ1 | HZ2 | 118.2° | 120.1° |
| CZ | CQ | HQ3 | HQ2 | 120.0° | 120.0° |
| CZ | CQ | HQ3 | HQ1 | 120.0° | 120.0° |
| CZ | CQ | HQ2 | HQ1 | 120.0° | 120.0° |
| N | CA | CB | CG | 46.8° | 60.0° |
| N | CA | CB | CD1 | 130.6° | 120.0° |
| N | CA | CB | HA | 114.6° | 120.0° |
| N | CA | CD1 | HA | 119.2° | 120.0° |
| N | CA | CB | CD2 | 75.5° | 60.0° |
| N | CA | CD1 | CE1 | 69.9° | 60.0° |
| N | CA | CB | HB | 165.1° | 180.0° |
| CA | N | H2 | H | 120.0° | 124.0° |
| N | CA | CD1 | HD12 | 170.0° | 180.0° |
| N | CA | CD1 | HD11 | 50.1° | 60.0° |
| CZ | CG | CB | HG | 116.6° | 120.0° |
| CZ | CG | CB | CA | 173.9° | 180.0° |
| CZ | CG | CB | CD2 | 51.3° | 60.0° |
| CZ | CG | C | OXT | 115.0° | 179.7° |
| CG | CZ | HZ1 | HZ2 | 118.2° | 119.9° |
| CG | CZ | CQ | HQ3 | 180.0° | 60.0° |
| CG | CZ | CQ | HQ2 | 60.0° | 60.0° |
| CG | CZ | CQ | HQ1 | 60.0° | 180.0° |
| CZ | CG | CB | HB | 67.8° | 60.0° |
| CG | CB | CA | CD2 | 122.3° | 120.0° |
| CG | CB | CA | HB | 118.3° | 120.0° |
| CG | CB | CA | CD1 | 177.4° | 180.0° |
| CG | CB | CD2 | HB | 119.2° | 120.0° |
| CG | CB | CD2 | CE2 | 176.8° | 180.0° |
| CB | CG | C | OXT | 116.7° | 59.7° |
| CB | CG | CZ | HZ1 | 68.0° | 65.0° |
| CB | CG | CZ | HZ2 | 50.9° | 55.0° |
| CG | CB | CA | HA | 67.8° | 60.0° |
| CG | CB | CD2 | HD21 | 56.4° | 60.0° |
| CG | CB | CD2 | HD22 | 62.8° | 60.0° |
| CB | CA | CD1 | HA | 114.5° | 120.0° |
| CA | CB | CD2 | HB | 119.4° | 120.0° |
| CB | CA | CD1 | CE1 | 56.4° | 60.0° |
| CA | CB | CD2 | CE2 | 55.3° | 60.0° |
| CA | CB | CG | HG | 57.3° | 60.0° |
| CB | CA | N | H2 | 180.0° | 180.0° |
| CB | CA | N | H | 60.0° | 56.0° |
| CB | CA | CD1 | HD12 | 63.6° | 60.0° |
| CB | CA | CD1 | HD11 | 176.4° | 180.0° |
| CA | CB | CD2 | HD21 | 65.1° | 60.0° |
| CA | CB | CD2 | HD22 | 175.7° | 180.0° |
| CD1 | CA | CB | CD2 | 55.1° | 60.0° |
| CA | CD1 | CE1 | HD12 | 120.0° | 120.0° |
| CA | CD1 | CE1 | HD11 | 120.0° | 120.0° |
| CA | CD1 | CE1 | CE2 | 60.3° | 60.0° |
| CD1 | CA | CB | HB | 64.3° | 60.0° |
| CD1 | CA | N | H2 | 53.2° | 60.0° |
| CD1 | CA | N | H | 173.2° | 176.0° |
| CA | CD1 | HD12 | HD11 | 119.9° | 120.0° |
| CA | CD1 | CE1 | HE12 | 179.1° | 180.0° |
| CA | CD1 | CE1 | HE11 | 60.3° | 60.0° |
| CB | CD2 | CE2 | HD21 | 120.4° | 120.0° |
| CB | CD2 | CE2 | HD22 | 120.4° | 120.0° |
| CB | CD2 | CE2 | CE1 | 55.3° | 60.0° |
| CD2 | CB | CG | HG | 65.3° | 60.0° |
| CD2 | CB | CA | HA | 169.9° | 180.0° |
| CB | CD2 | CE2 | HE22 | 175.0° | 60.1° |
| CB | CD2 | CE2 | HE21 | 64.4° | 180.0° |
| CB | CD2 | HD21 | HD22 | 118.8° | 120.0° |
| CD1 | CE1 | CE2 | CD2 | 58.5° | 60.0° |
| CD1 | CE1 | CE2 | HE12 | 120.6° | 120.0° |
| CD1 | CE1 | CE2 | HE11 | 120.6° | 120.0° |
| CE1 | CD1 | CA | HA | 170.8° | 180.0° |
| CE1 | CD1 | HD12 | HD11 | 120.0° | 120.0° |
| CD1 | CE1 | HE12 | HE11 | 118.2° | 120.0° |
| CD1 | CE1 | CE2 | HE22 | 178.1° | 60.0° |
| CD1 | CE1 | CE2 | HE21 | 61.2° | 180.0° |
| CD2 | CE2 | CE1 | HE22 | 119.7° | 120.0° |
| CD2 | CE2 | CE1 | HE21 | 119.7° | 120.0° |
| CE2 | CD2 | CB | HB | 64.1° | 60.0° |
| CD2 | CE2 | CE1 | HE12 | 179.0° | 180.0° |
| CD2 | CE2 | CE1 | HE11 | 62.1° | 60.0° |
| CD2 | CE2 | HE22 | HE21 | 120.9° | 119.9° |
| CE2 | CD2 | HD21 | HD22 | 118.8° | 120.0° |
| CE2 | CE1 | CD1 | HD12 | 59.7° | 60.0° |
| CE2 | CE1 | CD1 | HD11 | 179.7° | 180.0° |
| CE2 | CE1 | HE12 | HE11 | 118.2° | 120.0° |
| CE1 | CE2 | HE22 | HE21 | 120.9° | 120.0° |
| CE1 | CE2 | CD2 | HD21 | 65.1° | 60.0° |
| CE1 | CE2 | CD2 | HD22 | 175.7° | 180.0° |
| OXT | C | CG | HG | 0.2° | 60.3° |
| HG | CG | CZ | HZ1 | 48.6° | 175.0° |
| HG | CG | CZ | HZ2 | 167.5° | 65.0° |
| HG | CG | CB | HB | 175.6° | 180.0° |
| HZ1 | CZ | CQ | HQ3 | 59.4° | 180.0° |
| HZ1 | CZ | CQ | HQ2 | 60.6° | 60.0° |
| HZ1 | CZ | CQ | HQ1 | 179.4° | 60.0° |
| HZ2 | CZ | CQ | HQ3 | 59.4° | 60.0° |
| HZ2 | CZ | CQ | HQ2 | 179.4° | 180.0° |
| HZ2 | CZ | CQ | HQ1 | 60.6° | 60.1° |
| HQ3 | CQ | HQ2 | HQ1 | 120.0° | 120.0° |
| HB | CB | CA | HA | 50.5° | 60.0° |
| HB | CB | CD2 | HD21 | 175.6° | 180.0° |
| HB | CB | CD2 | HD22 | 56.4° | 60.1° |
| HA | CA | N | H2 | 65.9° | 60.0° |
| HA | CA | N | H | 54.1° | 63.9° |
| HA | CA | CD1 | HD12 | 50.8° | 60.0° |
| HA | CA | CD1 | HD11 | 69.1° | 60.0° |
| HD12 | CD1 | CE1 | HE12 | 60.8° | 60.0° |
| HD12 | CD1 | CE1 | HE11 | 179.7° | 180.0° |
| HD11 | CD1 | CE1 | HE12 | 59.1° | 60.0° |
| HD11 | CD1 | CE1 | HE11 | 59.7° | 60.0° |
| HE12 | CE1 | CE2 | HE22 | 61.3° | 60.0° |
| HE12 | CE1 | CE2 | HE21 | 59.3° | 60.0° |
| HE11 | CE1 | CE2 | HE22 | 57.5° | 180.0° |
| HE11 | CE1 | CE2 | HE21 | 178.2° | 60.0° |
| HE22 | CE2 | CD2 | HD21 | 54.6° | 179.9° |
| HE22 | CE2 | CD2 | HD22 | 64.6° | 60.0° |
| HE21 | CE2 | CD2 | HD21 | 175.2° | 60.0° |
| HE21 | CE2 | CD2 | HD22 | 56.0° | 60.0° |
