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SummaryGeometryRelated PDB entries

GM7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N01C02sing1.39Å1.45Å
C02C03doub1.39Å1.38ÅAromatic
C02C13sing1.39Å1.38ÅAromatic
O12C10doub1.21Å1.25Å
C03C04sing1.38Å1.38ÅAromatic
C13C09doub1.39Å1.39ÅAromatic
C04C05doub1.39Å1.39ÅAromatic
C09C05sing1.41Å1.38ÅAromatic
C09C10sing1.48Å1.53Å
O08C06doub1.22Å1.26Å
C05C06sing1.48Å1.53Å
C10O11sing1.35Å1.25Å
C06O07sing1.35Å1.26Å
C13H1sing1.08Å1.08Å
C03H2sing1.08Å1.08Å
C04H3sing1.08Å1.08Å
N01H4sing0.97Å1.00Å
N01H5sing0.97Å1.00Å
O07H6sing0.97Å0.95Å
O11H7sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N01C02C03119.9°119.9°
N01C02C13119.8°119.9°
C02N01H4109.5°120.0°
C02N01H5109.4°120.0°
C03C02C13120.4°120.2°
C02C03C04119.3°120.3°
C02C03H2120.4°119.8°
C02C13C09120.3°120.0°
C02C13H1119.8°120.0°
O12C10C09120.5°120.0°
O12C10O11120.3°120.0°
C03C04C05120.6°120.1°
C04C03H2120.4°119.9°
C03C04H3119.7°119.9°
C13C09C05119.5°119.6°
C13C09C10117.8°120.2°
C09C13H1119.9°120.0°
C04C05C09120.0°119.8°
C04C05C06118.0°120.1°
C05C04H3119.7°120.0°
C05C09C10122.7°120.2°
C09C05C06122.0°120.1°
C09C10O11119.2°120.0°
O08C06C05120.0°120.0°
O08C06O07120.4°120.0°
C05C06O07119.6°120.0°
C10O11H7109.5°117.0°
C06O07H6109.5°117.0°
H4N01H5109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N01C02C03C13179.2°180.0°
N01C02C03C04180.0°179.9°
N01C02C13C09179.7°180.0°
N01C02C13H10.3°0.3°
N01C02C03H20.0°0.1°
C02N01H4H5120.0°180.0°
C02C03C04H2180.0°179.9°
C03C02C13C090.5°0.0°
C02C03C04C050.3°0.1°
C03C02C13H1179.5°179.7°
C02C03C04H3179.8°179.9°
C03C02N01H4180.0°0.0°
C03C02N01H560.0°180.0°
C13C02C03C040.8°0.1°
C02C13C09H1180.0°179.7°
C02C13C09C050.9°0.0°
C02C13C09C10179.4°179.7°
C13C02C03H2179.2°179.9°
C13C02N01H40.8°180.0°
C13C02N01H5119.2°0.0°
O12C10C09C13124.9°173.8°
O12C10C09C0553.5°6.5°
O12C10C09O11178.4°179.7°
O12C10O11H70.0°0.3°
C03C04C05H3180.0°180.0°
C03C04C05C091.6°0.1°
C03C04C05C06178.9°180.0°
C13C09C05C042.0°0.0°
C13C09C05C10178.4°179.7°
C13C09C05C06179.1°179.9°
C13C09C10O1153.5°5.9°
C04C05C09C06177.1°179.9°
C04C05C09C10179.7°179.8°
C04C05C06O0845.0°125.0°
C04C05C06O07132.9°55.0°
C05C04C03H2179.7°180.0°
C09C05C06O08137.8°55.2°
C05C09C10O11128.1°173.8°
C09C05C06O0744.3°124.8°
C05C09C13H1179.1°179.7°
C09C05C04H3178.4°179.9°
C10C09C05C062.5°0.4°
C10C09C13H10.6°0.0°
C09C10O11H7178.4°180.0°
O08C06C05O07177.9°180.0°
O08C06O07H60.0°0.0°
C06C05C04H31.1°0.1°
C05C06O07H6177.9°180.0°
H2C03C04H30.3°0.1°

222415

PDB entries from 2024-07-10

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