GL9
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.53Å | 1.55Å | |
C1 | O5 | sing | 1.42Å | 1.44Å | |
C1 | N2 | sing | 1.47Å | 1.41Å | |
C1 | C7 | sing | 1.51Å | 1.52Å | |
C2 | O2 | sing | 1.43Å | 1.40Å | |
C2 | C3 | sing | 1.53Å | 1.59Å | |
C2 | H2 | sing | 1.09Å | 1.11Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
C3 | O3 | sing | 1.43Å | 1.40Å | |
C3 | C4 | sing | 1.53Å | 1.51Å | |
C3 | H3 | sing | 1.09Å | 1.12Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C4 | O4 | sing | 1.43Å | 1.38Å | |
C4 | C5 | sing | 1.53Å | 1.52Å | |
C4 | H4 | sing | 1.09Å | 1.11Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C5 | C6 | sing | 1.53Å | 1.48Å | |
C5 | O5 | sing | 1.43Å | 1.44Å | |
C5 | H5 | sing | 1.09Å | 1.12Å | |
C6 | O6 | sing | 1.43Å | 1.40Å | |
C6 | H61 | sing | 1.09Å | 1.11Å | |
C6 | H62 | sing | 1.09Å | 1.12Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
N2 | C8 | sing | 1.35Å | 1.33Å | |
N2 | HN2 | sing | 0.97Å | 1.02Å | |
C8 | O8 | doub | 1.22Å | 1.23Å | |
C8 | N1 | sing | 1.34Å | 1.35Å | |
N1 | C7 | sing | 1.35Å | 1.35Å | |
N1 | N3 | sing | 1.40Å | 1.22Å | |
C7 | O7 | doub | 1.21Å | 1.22Å | |
N3 | C9 | sing | 1.35Å | 1.34Å | |
N3 | HN3 | sing | 0.97Å | 1.02Å | |
C9 | O9 | doub | 1.21Å | 1.23Å | |
C9 | C10 | sing | 1.51Å | 1.51Å | |
C10 | H101 | sing | 1.09Å | 1.11Å | |
C10 | H102 | sing | 1.09Å | 1.12Å | |
C10 | H103 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | O5 | 111.9° | 111.1° |
C2 | C1 | N2 | 106.3° | 110.3° |
C2 | C1 | C7 | 117.7° | 110.4° |
C1 | C2 | O2 | 108.3° | 109.6° |
C1 | C2 | C3 | 109.0° | 109.1° |
C1 | C2 | H2 | 111.3° | 109.5° |
O5 | C1 | N2 | 109.4° | 110.5° |
O5 | C1 | C7 | 111.1° | 110.3° |
C1 | O5 | C5 | 114.2° | 107.9° |
N2 | C1 | C7 | 99.4° | 104.0° |
C1 | N2 | C8 | 107.6° | 106.4° |
C1 | N2 | HN2 | 112.9° | 126.7° |
C1 | C7 | N1 | 113.7° | 105.6° |
C1 | C7 | O7 | 124.0° | 127.3° |
O2 | C2 | C3 | 111.6° | 109.5° |
O2 | C2 | H2 | 108.7° | 109.5° |
C2 | O2 | HO2 | 108.2° | 106.9° |
C3 | C2 | H2 | 108.0° | 109.5° |
C2 | C3 | O3 | 114.4° | 109.8° |
C2 | C3 | C4 | 108.2° | 108.6° |
C2 | C3 | H3 | 106.5° | 109.6° |
O3 | C3 | C4 | 107.8° | 109.6° |
O3 | C3 | H3 | 106.9° | 109.7° |
C3 | O3 | HO3 | 114.4° | 106.8° |
C4 | C3 | H3 | 113.2° | 109.6° |
C3 | C4 | O4 | 107.2° | 109.6° |
C3 | C4 | C5 | 108.8° | 109.0° |
C3 | C4 | H4 | 111.7° | 109.6° |
O4 | C4 | C5 | 110.5° | 109.5° |
O4 | C4 | H4 | 110.1° | 109.5° |
C4 | O4 | HO4 | 107.2° | 106.8° |
C5 | C4 | H4 | 108.5° | 109.5° |
C4 | C5 | C6 | 108.8° | 109.3° |
C4 | C5 | O5 | 107.9° | 109.8° |
C4 | C5 | H5 | 110.9° | 109.4° |
C6 | C5 | O5 | 109.5° | 109.4° |
C6 | C5 | H5 | 109.4° | 109.4° |
C5 | C6 | O6 | 109.9° | 109.4° |
C5 | C6 | H61 | 112.1° | 109.5° |
C5 | C6 | H62 | 112.1° | 109.5° |
O5 | C5 | H5 | 110.3° | 109.4° |
O6 | C6 | H61 | 112.1° | 109.4° |
O6 | C6 | H62 | 112.0° | 109.5° |
C6 | O6 | HO6 | 109.9° | 106.8° |
H61 | C6 | H62 | 98.3° | 109.5° |
C8 | N2 | HN2 | 112.9° | 126.8° |
N2 | C8 | O8 | 118.9° | 123.8° |
N2 | C8 | N1 | 118.1° | 112.5° |
O8 | C8 | N1 | 123.0° | 123.8° |
C8 | N1 | C7 | 100.8° | 111.5° |
C8 | N1 | N3 | 127.6° | 124.2° |
C7 | N1 | N3 | 131.7° | 124.3° |
N1 | C7 | O7 | 122.3° | 127.1° |
N1 | N3 | C9 | 133.8° | 120.0° |
N1 | N3 | HN3 | 106.9° | 120.0° |
C9 | N3 | HN3 | 119.3° | 120.0° |
N3 | C9 | O9 | 121.9° | 120.0° |
N3 | C9 | C10 | 120.7° | 120.1° |
O9 | C9 | C10 | 117.3° | 119.9° |
C9 | C10 | H101 | 120.7° | 109.6° |
C9 | C10 | H102 | 108.2° | 109.4° |
C9 | C10 | H103 | 108.2° | 109.4° |
H101 | C10 | H102 | 108.2° | 109.5° |
H101 | C10 | H103 | 108.2° | 109.5° |
H102 | C10 | H103 | 101.7° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | O5 | N2 | 117.5° | 122.7° |
C2 | C1 | O5 | C7 | 133.7° | 122.8° |
C2 | C1 | N2 | C7 | 122.6° | 118.4° |
C1 | C2 | O2 | C3 | 120.0° | 119.7° |
C1 | C2 | O2 | H2 | 121.1° | 120.2° |
C1 | C2 | C3 | H2 | 121.1° | 119.9° |
C1 | C2 | O2 | HO2 | 180.0° | 179.7° |
C1 | C2 | C3 | O3 | 174.2° | 172.8° |
C1 | C2 | C3 | C4 | 54.1° | 53.0° |
C1 | C2 | C3 | H3 | 67.9° | 66.7° |
C2 | C1 | O5 | C5 | 56.8° | 66.2° |
C2 | C1 | N2 | C8 | 116.3° | 118.2° |
C2 | C1 | N2 | HN2 | 9.0° | 61.8° |
C2 | C1 | C7 | N1 | 108.6° | 117.9° |
C2 | C1 | C7 | O7 | 70.3° | 61.7° |
O5 | C1 | N2 | C7 | 116.4° | 118.4° |
O5 | C1 | C2 | O2 | 172.3° | 179.8° |
O5 | C1 | C2 | C3 | 50.7° | 59.9° |
O5 | C1 | C2 | H2 | 68.3° | 60.0° |
C1 | O5 | C5 | C4 | 62.3° | 66.7° |
C1 | O5 | C5 | C6 | 179.5° | 173.3° |
C1 | O5 | C5 | H5 | 59.0° | 53.4° |
O5 | C1 | N2 | C8 | 122.7° | 118.6° |
O5 | C1 | N2 | HN2 | 112.0° | 61.4° |
O5 | C1 | C7 | N1 | 120.6° | 118.9° |
O5 | C1 | C7 | O7 | 60.5° | 61.5° |
N2 | C1 | C2 | O2 | 68.4° | 57.2° |
N2 | C1 | C2 | C3 | 170.1° | 177.2° |
N2 | C1 | C2 | H2 | 51.1° | 62.9° |
N2 | C1 | O5 | C5 | 174.3° | 171.1° |
C1 | N2 | C8 | HN2 | 125.2° | 180.0° |
C1 | N2 | C8 | O8 | 171.6° | 180.0° |
C1 | N2 | C8 | N1 | 6.2° | 0.0° |
N2 | C1 | C7 | N1 | 5.4° | 0.4° |
N2 | C1 | C7 | O7 | 175.7° | 180.0° |
C7 | C1 | C2 | O2 | 41.8° | 57.1° |
C7 | C1 | C2 | C3 | 79.7° | 62.8° |
C7 | C1 | C2 | H2 | 161.3° | 177.3° |
C7 | C1 | O5 | C5 | 77.0° | 56.6° |
C7 | C1 | N2 | C8 | 6.3° | 0.2° |
C7 | C1 | N2 | HN2 | 131.6° | 179.8° |
C1 | C7 | N1 | C8 | 2.2° | 0.4° |
C1 | C7 | N1 | O7 | 178.9° | 179.6° |
C1 | C7 | N1 | N3 | 177.8° | 179.9° |
O2 | C2 | C3 | H2 | 119.4° | 120.1° |
O2 | C2 | C3 | O3 | 66.3° | 67.2° |
O2 | C2 | C3 | C4 | 173.6° | 173.0° |
O2 | C2 | C3 | H3 | 51.6° | 53.3° |
C3 | C2 | O2 | HO2 | 60.0° | 60.0° |
C2 | C3 | O3 | C4 | 120.4° | 119.2° |
C2 | C3 | O3 | H3 | 117.6° | 120.5° |
C2 | C3 | C4 | H3 | 117.8° | 119.7° |
C2 | C3 | O3 | HO3 | 180.0° | 179.2° |
C2 | C3 | C4 | O4 | 179.0° | 174.1° |
C2 | C3 | C4 | C5 | 61.5° | 54.2° |
C2 | C3 | C4 | H4 | 58.3° | 65.7° |
H2 | C2 | O2 | HO2 | 58.9° | 60.2° |
H2 | C2 | C3 | O3 | 53.2° | 52.9° |
H2 | C2 | C3 | C4 | 67.0° | 66.9° |
H2 | C2 | C3 | H3 | 171.0° | 173.4° |
O3 | C3 | C4 | H3 | 118.0° | 120.4° |
O3 | C3 | C4 | O4 | 54.8° | 66.0° |
O3 | C3 | C4 | C5 | 174.3° | 174.1° |
O3 | C3 | C4 | H4 | 65.9° | 54.2° |
C4 | C3 | O3 | HO3 | 59.6° | 60.1° |
C3 | C4 | O4 | C5 | 118.4° | 119.6° |
C3 | C4 | O4 | H4 | 121.7° | 120.3° |
C3 | C4 | C5 | H4 | 121.8° | 119.9° |
C3 | C4 | O4 | HO4 | 180.0° | 179.6° |
C3 | C4 | C5 | C6 | 176.7° | 178.2° |
C3 | C4 | C5 | O5 | 64.6° | 61.7° |
C3 | C4 | C5 | H5 | 56.3° | 58.4° |
H3 | C3 | O3 | HO3 | 62.4° | 60.3° |
H3 | C3 | C4 | O4 | 63.2° | 54.4° |
H3 | C3 | C4 | C5 | 56.3° | 65.5° |
H3 | C3 | C4 | H4 | 176.1° | 174.6° |
O4 | C4 | C5 | H4 | 120.8° | 120.1° |
O4 | C4 | C5 | C6 | 59.3° | 58.2° |
O4 | C4 | C5 | O5 | 177.9° | 178.3° |
O4 | C4 | C5 | H5 | 61.1° | 61.6° |
C5 | C4 | O4 | HO4 | 61.6° | 60.0° |
C4 | C5 | C6 | O5 | 117.7° | 120.3° |
C4 | C5 | C6 | H5 | 121.3° | 119.8° |
C4 | C5 | O5 | H5 | 121.3° | 120.1° |
C4 | C5 | C6 | O6 | 56.9° | 179.7° |
C4 | C5 | C6 | H61 | 177.8° | 59.7° |
C4 | C5 | C6 | H62 | 68.4° | 60.3° |
H4 | C4 | O4 | HO4 | 58.3° | 60.1° |
H4 | C4 | C5 | C6 | 61.5° | 61.9° |
H4 | C4 | C5 | O5 | 57.2° | 58.2° |
H4 | C4 | C5 | H5 | 178.1° | 178.3° |
C6 | C5 | O5 | H5 | 120.5° | 119.9° |
C5 | C6 | O6 | H61 | 125.3° | 120.0° |
C5 | C6 | O6 | H62 | 125.3° | 120.0° |
C5 | C6 | H61 | H62 | 118.0° | 120.0° |
C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
O5 | C5 | C6 | O6 | 60.8° | 60.0° |
O5 | C5 | C6 | H61 | 64.5° | 180.0° |
O5 | C5 | C6 | H62 | 173.9° | 60.0° |
H5 | C5 | C6 | O6 | 178.2° | 59.8° |
H5 | C5 | C6 | H61 | 56.5° | 60.1° |
H5 | C5 | C6 | H62 | 52.9° | 179.9° |
O6 | C6 | H61 | H62 | 117.9° | 120.1° |
H61 | C6 | O6 | HO6 | 54.7° | 60.1° |
H62 | C6 | O6 | HO6 | 54.7° | 60.0° |
N2 | C8 | O8 | N1 | 177.8° | 180.0° |
N2 | C8 | N1 | C7 | 2.5° | 0.3° |
N2 | C8 | N1 | N3 | 177.6° | 179.9° |
HN2 | N2 | C8 | O8 | 46.4° | 0.0° |
HN2 | N2 | C8 | N1 | 131.5° | 179.9° |
O8 | C8 | N1 | C7 | 175.3° | 179.7° |
O8 | C8 | N1 | N3 | 4.6° | 0.1° |
C8 | N1 | C7 | N3 | 179.9° | 179.6° |
C8 | N1 | C7 | O7 | 178.9° | 180.0° |
C8 | N1 | N3 | C9 | 122.9° | 90.0° |
C8 | N1 | N3 | HN3 | 57.2° | 89.9° |
C7 | N1 | N3 | C9 | 57.2° | 90.4° |
C7 | N1 | N3 | HN3 | 122.7° | 89.7° |
N3 | N1 | C7 | O7 | 1.1° | 0.3° |
N1 | N3 | C9 | HN3 | 179.9° | 179.9° |
N1 | N3 | C9 | O9 | 144.7° | 0.1° |
N1 | N3 | C9 | C10 | 37.1° | 180.0° |
N3 | C9 | O9 | C10 | 178.3° | 179.9° |
N3 | C9 | C10 | H101 | 180.0° | 179.9° |
N3 | C9 | C10 | H102 | 54.7° | 59.9° |
N3 | C9 | C10 | H103 | 54.7° | 60.0° |
HN3 | N3 | C9 | O9 | 35.3° | 180.0° |
HN3 | N3 | C9 | C10 | 142.9° | 0.1° |
O9 | C9 | C10 | H101 | 1.7° | 0.0° |
O9 | C9 | C10 | H102 | 127.0° | 120.0° |
O9 | C9 | C10 | H103 | 123.6° | 120.1° |
C9 | C10 | H101 | H102 | 125.2° | 120.0° |
C9 | C10 | H101 | H103 | 125.3° | 120.0° |
C9 | C10 | H102 | H103 | 113.8° | 119.9° |
H101 | C10 | H102 | H103 | 113.8° | 120.0° |