GL5
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.53Å | 1.57Å | |
C1 | O5 | sing | 1.42Å | 1.45Å | |
C1 | N2 | sing | 1.47Å | 1.45Å | |
C1 | C7 | sing | 1.51Å | 1.57Å | |
C2 | O2 | sing | 1.43Å | 1.46Å | |
C2 | C3 | sing | 1.53Å | 1.61Å | |
C2 | H2 | sing | 1.09Å | 1.11Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
C3 | O3 | sing | 1.43Å | 1.39Å | |
C3 | C4 | sing | 1.53Å | 1.55Å | |
C3 | H3 | sing | 1.09Å | 1.12Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C4 | O4 | sing | 1.43Å | 1.40Å | |
C4 | C5 | sing | 1.53Å | 1.66Å | |
C4 | H4 | sing | 1.09Å | 1.12Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C5 | C6 | sing | 1.53Å | 1.54Å | |
C5 | O5 | sing | 1.43Å | 1.44Å | |
C5 | H5 | sing | 1.09Å | 1.12Å | |
C6 | O6 | sing | 1.43Å | 1.40Å | |
C6 | H61 | sing | 1.09Å | 1.11Å | |
C6 | H62 | sing | 1.09Å | 1.12Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
N2 | C8 | sing | 1.35Å | 1.34Å | |
N2 | HN2 | sing | 0.97Å | 1.02Å | |
C8 | O8 | doub | 1.21Å | 1.24Å | |
C8 | N1 | sing | 1.34Å | 1.36Å | |
N1 | C7 | sing | 1.35Å | 1.39Å | |
N1 | O9 | sing | 1.42Å | 1.39Å | |
C7 | O7 | doub | 1.21Å | 1.31Å | |
O9 | HO9 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | O5 | 113.1° | 111.2° |
C2 | C1 | N2 | 110.3° | 110.3° |
C2 | C1 | C7 | 117.8° | 110.2° |
C1 | C2 | O2 | 110.8° | 109.6° |
C1 | C2 | C3 | 111.4° | 109.1° |
C1 | C2 | H2 | 107.2° | 109.5° |
O5 | C1 | N2 | 106.0° | 110.5° |
O5 | C1 | C7 | 109.5° | 110.6° |
C1 | O5 | C5 | 115.5° | 107.8° |
N2 | C1 | C7 | 98.7° | 103.9° |
C1 | N2 | C8 | 111.3° | 106.5° |
C1 | N2 | HN2 | 111.5° | 126.7° |
C1 | C7 | N1 | 110.0° | 105.6° |
C1 | C7 | O7 | 124.7° | 127.2° |
O2 | C2 | C3 | 109.2° | 109.6° |
O2 | C2 | H2 | 109.5° | 109.5° |
C2 | O2 | HO2 | 110.7° | 106.8° |
C3 | C2 | H2 | 108.7° | 109.5° |
C2 | C3 | O3 | 113.8° | 109.6° |
C2 | C3 | C4 | 109.2° | 108.6° |
C2 | C3 | H3 | 106.8° | 109.6° |
O3 | C3 | C4 | 109.8° | 109.8° |
O3 | C3 | H3 | 106.1° | 109.7° |
C3 | O3 | HO3 | 113.8° | 106.8° |
C4 | C3 | H3 | 111.0° | 109.6° |
C3 | C4 | O4 | 110.4° | 109.6° |
C3 | C4 | C5 | 109.5° | 109.0° |
C3 | C4 | H4 | 109.2° | 109.5° |
O4 | C4 | C5 | 110.3° | 109.6° |
O4 | C4 | H4 | 108.2° | 109.5° |
C4 | O4 | HO4 | 110.5° | 106.8° |
C5 | C4 | H4 | 109.2° | 109.6° |
C4 | C5 | C6 | 110.1° | 109.4° |
C4 | C5 | O5 | 106.5° | 109.7° |
C4 | C5 | H5 | 110.9° | 109.4° |
C6 | C5 | O5 | 109.3° | 109.4° |
C6 | C5 | H5 | 108.3° | 109.4° |
C5 | C6 | O6 | 107.5° | 109.5° |
C5 | C6 | H61 | 112.9° | 109.5° |
C5 | C6 | H62 | 112.9° | 109.5° |
O5 | C5 | H5 | 111.7° | 109.4° |
O6 | C6 | H61 | 112.9° | 109.4° |
O6 | C6 | H62 | 112.9° | 109.5° |
C6 | O6 | HO6 | 107.5° | 106.9° |
H61 | C6 | H62 | 97.5° | 109.4° |
C8 | N2 | HN2 | 111.6° | 126.8° |
N2 | C8 | O8 | 123.8° | 123.7° |
N2 | C8 | N1 | 113.8° | 112.4° |
O8 | C8 | N1 | 122.4° | 123.9° |
C8 | N1 | C7 | 106.1° | 111.6° |
C8 | N1 | O9 | 128.9° | 124.1° |
C7 | N1 | O9 | 124.9° | 124.2° |
N1 | C7 | O7 | 125.3° | 127.3° |
N1 | O9 | HO9 | 128.8° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | O5 | N2 | 121.0° | 122.8° |
C2 | C1 | O5 | C7 | 133.4° | 122.7° |
C2 | C1 | N2 | C7 | 124.0° | 118.1° |
C1 | C2 | O2 | C3 | 123.1° | 119.7° |
C1 | C2 | O2 | H2 | 118.0° | 120.1° |
C1 | C2 | C3 | H2 | 117.9° | 119.8° |
C1 | C2 | O2 | HO2 | 180.0° | 180.0° |
C1 | C2 | C3 | O3 | 172.7° | 172.8° |
C1 | C2 | C3 | C4 | 49.7° | 52.9° |
C1 | C2 | C3 | H3 | 70.5° | 66.8° |
C2 | C1 | O5 | C5 | 58.0° | 66.2° |
C2 | C1 | N2 | C8 | 123.7° | 118.0° |
C2 | C1 | N2 | HN2 | 1.6° | 61.9° |
C2 | C1 | C7 | N1 | 119.4° | 118.2° |
C2 | C1 | C7 | O7 | 60.2° | 61.9° |
O5 | C1 | N2 | C7 | 113.2° | 118.6° |
O5 | C1 | C2 | O2 | 170.2° | 179.9° |
O5 | C1 | C2 | C3 | 48.4° | 59.9° |
O5 | C1 | C2 | H2 | 70.5° | 60.0° |
C1 | O5 | C5 | C4 | 62.4° | 66.8° |
C1 | O5 | C5 | C6 | 178.7° | 173.2° |
C1 | O5 | C5 | H5 | 59.0° | 53.3° |
O5 | C1 | N2 | C8 | 113.6° | 118.7° |
O5 | C1 | N2 | HN2 | 121.1° | 61.4° |
O5 | C1 | C7 | N1 | 109.6° | 118.6° |
O5 | C1 | C7 | O7 | 70.8° | 61.3° |
N2 | C1 | C2 | O2 | 71.3° | 57.2° |
N2 | C1 | C2 | C3 | 166.9° | 177.2° |
N2 | C1 | C2 | H2 | 48.0° | 62.9° |
N2 | C1 | O5 | C5 | 179.0° | 171.1° |
C1 | N2 | C8 | HN2 | 125.3° | 179.9° |
C1 | N2 | C8 | O8 | 176.6° | 180.0° |
C1 | N2 | C8 | N1 | 1.5° | 0.1° |
N2 | C1 | C7 | N1 | 0.8° | 0.0° |
N2 | C1 | C7 | O7 | 178.8° | 179.9° |
C7 | C1 | C2 | O2 | 40.9° | 56.9° |
C7 | C1 | C2 | C3 | 80.9° | 63.1° |
C7 | C1 | C2 | H2 | 160.2° | 177.0° |
C7 | C1 | O5 | C5 | 75.5° | 56.5° |
C7 | C1 | N2 | C8 | 0.3° | 0.0° |
C7 | C1 | N2 | HN2 | 125.7° | 179.9° |
C1 | C7 | N1 | C8 | 1.7° | 0.1° |
C1 | C7 | N1 | O7 | 179.6° | 179.9° |
C1 | C7 | N1 | O9 | 178.2° | 180.0° |
O2 | C2 | C3 | H2 | 119.4° | 120.2° |
O2 | C2 | C3 | O3 | 64.6° | 67.2° |
O2 | C2 | C3 | C4 | 172.4° | 172.9° |
O2 | C2 | C3 | H3 | 52.2° | 53.2° |
C3 | C2 | O2 | HO2 | 56.9° | 60.2° |
C2 | C3 | O3 | C4 | 122.7° | 119.2° |
C2 | C3 | O3 | H3 | 117.2° | 120.3° |
C2 | C3 | C4 | H3 | 117.5° | 119.7° |
C2 | C3 | O3 | HO3 | 180.0° | 179.9° |
C2 | C3 | C4 | O4 | 177.8° | 174.2° |
C2 | C3 | C4 | C5 | 56.2° | 54.2° |
C2 | C3 | C4 | H4 | 63.3° | 65.7° |
H2 | C2 | O2 | HO2 | 62.1° | 60.0° |
H2 | C2 | C3 | O3 | 54.8° | 53.0° |
H2 | C2 | C3 | C4 | 68.2° | 66.9° |
H2 | C2 | C3 | H3 | 171.6° | 173.4° |
O3 | C3 | C4 | H3 | 117.1° | 120.5° |
O3 | C3 | C4 | O4 | 56.7° | 66.0° |
O3 | C3 | C4 | C5 | 178.4° | 174.1° |
O3 | C3 | C4 | H4 | 62.1° | 54.2° |
C4 | C3 | O3 | HO3 | 57.3° | 60.9° |
C3 | C4 | O4 | C5 | 121.1° | 119.6° |
C3 | C4 | O4 | H4 | 119.4° | 120.1° |
C3 | C4 | C5 | H4 | 119.5° | 119.8° |
C3 | C4 | O4 | HO4 | 180.0° | 180.0° |
C3 | C4 | C5 | C6 | 179.9° | 178.1° |
C3 | C4 | C5 | O5 | 61.7° | 61.8° |
C3 | C4 | C5 | H5 | 60.1° | 58.3° |
H3 | C3 | O3 | HO3 | 62.8° | 59.6° |
H3 | C3 | C4 | O4 | 60.3° | 54.5° |
H3 | C3 | C4 | C5 | 61.4° | 65.4° |
H3 | C3 | C4 | H4 | 179.1° | 174.7° |
O4 | C4 | C5 | H4 | 118.8° | 120.2° |
O4 | C4 | C5 | C6 | 58.2° | 58.2° |
O4 | C4 | C5 | O5 | 176.6° | 178.2° |
O4 | C4 | C5 | H5 | 61.6° | 61.7° |
C5 | C4 | O4 | HO4 | 58.8° | 60.4° |
C4 | C5 | C6 | O5 | 116.7° | 120.2° |
C4 | C5 | C6 | H5 | 121.4° | 119.8° |
C4 | C5 | O5 | H5 | 121.3° | 120.1° |
C4 | C5 | C6 | O6 | 61.3° | 179.9° |
C4 | C5 | C6 | H61 | 173.4° | 60.2° |
C4 | C5 | C6 | H62 | 63.9° | 59.8° |
H4 | C4 | O4 | HO4 | 60.6° | 59.9° |
H4 | C4 | C5 | C6 | 60.6° | 62.0° |
H4 | C4 | C5 | O5 | 57.8° | 58.0° |
H4 | C4 | C5 | H5 | 179.6° | 178.1° |
C6 | C5 | O5 | H5 | 119.8° | 119.9° |
C5 | C6 | O6 | H61 | 125.3° | 120.0° |
C5 | C6 | O6 | H62 | 125.2° | 120.1° |
C5 | C6 | H61 | H62 | 118.9° | 120.1° |
C5 | C6 | O6 | HO6 | 179.9° | 180.0° |
O5 | C5 | C6 | O6 | 55.3° | 59.9° |
O5 | C5 | C6 | H61 | 69.9° | 60.1° |
O5 | C5 | C6 | H62 | 179.4° | 179.9° |
H5 | C5 | C6 | O6 | 177.3° | 60.0° |
H5 | C5 | C6 | H61 | 52.0° | 180.0° |
H5 | C5 | C6 | H62 | 57.5° | 60.0° |
O6 | C6 | H61 | H62 | 118.9° | 119.9° |
H61 | C6 | O6 | HO6 | 54.8° | 60.0° |
H62 | C6 | O6 | HO6 | 54.7° | 59.9° |
N2 | C8 | O8 | N1 | 177.9° | 179.9° |
N2 | C8 | N1 | C7 | 2.0° | 0.1° |
N2 | C8 | N1 | O9 | 178.4° | 179.9° |
HN2 | N2 | C8 | O8 | 51.3° | 0.1° |
HN2 | N2 | C8 | N1 | 126.8° | 180.0° |
O8 | C8 | N1 | C7 | 176.1° | 179.9° |
O8 | C8 | N1 | O9 | 0.3° | 0.0° |
C8 | N1 | C7 | O9 | 176.5° | 179.9° |
C8 | N1 | C7 | O7 | 177.9° | 180.0° |
C8 | N1 | O9 | HO9 | 180.0° | 0.0° |
C7 | N1 | O9 | HO9 | 4.3° | 180.0° |
O9 | N1 | C7 | O7 | 1.4° | 0.1° |