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GKH

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N3doub1.32Å1.38ÅAromatic
C2N1sing1.32Å1.38ÅAromatic
N3C4sing1.33Å1.34ÅAromatic
N1C6doub1.33Å1.34ÅAromatic
C1'N9sing1.47Å1.53Å
C1'O4'sing1.44Å1.46Å
C1'C2'sing1.54Å1.55Å
C4N9sing1.37Å1.33ÅAromatic
C4C5doub1.41Å1.34ÅAromatic
O2'C2'sing1.43Å1.46Å
N9C8sing1.36Å1.35ÅAromatic
O4'C4'sing1.44Å1.45Å
C6C5sing1.41Å1.34ÅAromatic
C6N6sing1.38Å1.33Å
C5N7sing1.35Å1.35ÅAromatic
OBKSAPdoub1.42Å1.50Å
OBLCANdoub1.22Å1.21Å
C8N7doub1.30Å1.33ÅAromatic
C2'C3'sing1.55Å1.55Å
O5'SAPsing1.52Å1.54Å
O5'C5'sing1.43Å1.45Å
C4'C5'sing1.53Å1.51Å
C4'C3'sing1.54Å1.52Å
SAPNAOsing1.66Å1.65Å
SAPOBJdoub1.42Å1.55Å
CANNAOsing1.35Å1.31Å
CANCAMsing1.47Å1.36Å
C3'O3'sing1.43Å1.44Å
SAGCAFsing1.76Å1.47ÅAromatic
SAGCAHsing1.76Å1.62ÅAromatic
CAMNALsing1.32Å1.37ÅAromatic
CAMCBMdoub1.36Å1.34ÅAromatic
CAICAHsing1.47Å1.33Å
CAICAJdoub1.35Å1.50Å
CBPCAFdoub1.39Å1.34ÅAromatic
CBPCABsing1.38Å1.39ÅAromatic
NALCAKdoub1.30Å1.37ÅAromatic
CAFCAEsing1.40Å1.37ÅAromatic
CAHNBOdoub1.29Å1.33ÅAromatic
OAACABsing1.36Å1.37Å
CBMSBNsing1.71Å1.69ÅAromatic
CABCACdoub1.39Å1.41ÅAromatic
CAKCAJsing1.47Å1.34Å
CAKSBNsing1.76Å1.48ÅAromatic
CAENBOsing1.34Å1.37ÅAromatic
CAECADdoub1.41Å1.36ÅAromatic
CACCADsing1.36Å1.41ÅAromatic
C2H1sing1.08Å1.08Å
CADH2sing1.08Å1.08Å
CACH3sing1.08Å1.08Å
OAAH4sing0.97Å0.95Å
CBPH5sing1.08Å1.08Å
CAIH6sing1.08Å1.08Å
CAJH7sing1.08Å1.08Å
CBMH8sing1.08Å1.08Å
NAOH9sing0.97Å1.00Å
C5'H10sing1.09Å1.10Å
C5'H11sing1.09Å1.10Å
C4'H12sing1.09Å1.10Å
C3'H13sing1.09Å1.10Å
O3'H14sing0.97Å0.95Å
C2'H15sing1.09Å1.10Å
O2'H16sing0.97Å0.95Å
C1'H17sing1.09Å1.10Å
C8H18sing1.08Å1.08Å
N6H19sing0.97Å1.00Å
N6H20sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N3C2N1119.0°122.5°
C2N3C4119.1°120.6°
N3C2H1120.5°118.7°
C2N1C6119.2°121.2°
N1C2H1120.5°118.8°
N3C4N9130.3°134.9°
N3C4C5121.7°119.1°
N1C6C5121.8°118.5°
N1C6N6121.3°120.8°
N9C1'O4'110.9°110.4°
N9C1'C2'111.6°110.4°
C1'N9C4121.7°126.3°
C1'N9C8130.6°126.3°
N9C1'H17110.1°110.3°
O4'C1'C2'103.2°104.8°
C1'O4'C4'108.9°105.3°
O4'C1'H17111.1°110.3°
C1'C2'O2'110.6°110.6°
C1'C2'C3'102.5°104.1°
C1'C2'H15108.9°110.5°
C2'C1'H17109.8°110.5°
N9C4C5108.0°106.0°
C4N9C8107.7°107.5°
C4C5C6119.3°118.1°
C4C5N7108.3°107.1°
O2'C2'C3'115.3°110.5°
O2'C2'H15110.3°110.5°
C2'O2'H16109.5°114.0°
N9C8N7108.7°110.0°
N9C8H18125.6°125.1°
O4'C4'C5'108.7°110.4°
O4'C4'C3'100.7°104.8°
O4'C4'H12112.3°110.5°
C5C6N6116.9°120.7°
C6C5N7132.5°134.7°
C6N6H19109.5°120.0°
C6N6H20109.5°119.9°
C5N7C8107.3°109.4°
OBKSAPO5'109.7°106.4°
OBKSAPNAO113.7°106.4°
OBKSAPOBJ103.9°123.2°
OBLCANNAO117.8°120.0°
OBLCANCAM123.5°120.0°
N7C8H18125.6°125.0°
C2'C3'C4'97.3°104.1°
C2'C3'O3'113.9°110.5°
C2'C3'H13109.3°110.6°
C3'C2'H15108.9°110.5°
SAPO5'C5'122.2°114.0°
O5'SAPNAO107.5°107.2°
O5'SAPOBJ112.2°106.4°
O5'C5'C4'111.0°109.5°
O5'C5'H10109.1°109.5°
O5'C5'H11109.1°109.5°
C5'C4'C3'112.3°110.3°
C4'C5'H10109.1°109.5°
C4'C5'H11109.1°109.5°
C5'C4'H12111.3°110.3°
C4'C3'O3'114.9°110.5°
C3'C4'H12111.1°110.4°
C4'C3'H13109.7°110.5°
NAOSAPOBJ109.9°106.4°
SAPNAOCAN123.1°120.0°
SAPNAOH9118.5°120.0°
NAOCANCAM118.6°120.0°
CANNAOH9118.5°119.9°
CANCAMNAL127.2°122.5°
CANCAMCBM122.7°122.5°
O3'C3'H13110.9°110.4°
C3'O3'H14109.5°114.1°
CAFSAGCAH98.5°90.3°
SAGCAFCBP127.2°131.2°
SAGCAFCAE109.4°108.4°
SAGCAHCAI120.4°124.8°
SAGCAHNBO109.8°110.2°
NALCAMCBM110.1°115.0°
CAMNALCAK114.4°115.8°
CAMCBMSBN107.6°109.0°
CAMCBMH8126.2°125.5°
CAHCAICAJ119.5°120.0°
CAICAHNBO129.8°124.9°
CAHCAIH6120.2°120.0°
CAICAJCAK116.7°120.0°
CAJCAIH6120.2°120.0°
CAICAJH7121.6°120.0°
CAFCBPCAB121.5°120.0°
CBPCAFCAE123.4°120.4°
CAFCBPH5119.3°120.0°
CBPCABOAA119.1°120.1°
CBPCABCAC117.2°119.9°
CABCBPH5119.3°120.0°
NALCAKCAJ131.2°125.2°
NALCAKSBN110.0°109.6°
CAFCAENBO113.8°113.0°
CAFCAECAD116.8°118.4°
CAHNBOCAE108.4°118.1°
OAACABCAC123.7°120.0°
CABOAAH4109.5°114.0°
CBMSBNCAK97.9°90.6°
SBNCBMH8126.2°125.5°
CABCACCAD118.8°120.7°
CABCACH3120.6°119.6°
CAJCAKSBN118.8°125.2°
CAKCAJH7121.7°120.0°
NBOCAECAD129.4°128.7°
CAECADCAC122.3°120.6°
CAECADH2118.9°119.7°
CACCADH2118.9°119.7°
CADCACH3120.6°119.6°
H10C5'H11109.5°109.5°
H19N6H20109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N3C2N1H1180.0°179.9°
N3C2N1C60.0°0.1°
C2N3C4N9179.9°180.0°
C2N3C4C50.3°0.1°
N1C2N3C40.0°0.1°
C2N1C6C50.3°0.0°
C2N1C6N6179.9°179.9°
N3C4N9C1'0.8°0.1°
N3C4N9C5179.6°180.0°
N3C4N9C8179.4°180.0°
N3C4C5C60.6°0.0°
N3C4C5N7179.7°180.0°
C4N3C2H1180.0°179.8°
N1C6C5C40.5°0.1°
N1C6C5N6179.9°180.0°
N1C6C5N7179.8°180.0°
C6N1C2H1180.0°179.8°
N1C6N6H190.0°179.9°
N1C6N6H20120.0°0.0°
N9C1'O4'C2'119.6°118.9°
N9C1'O4'H17122.8°122.2°
N9C1'C2'H17122.3°122.3°
C1'N9C4C8178.5°179.9°
C1'N9C4C5178.8°179.9°
N9C1'C2'O2'138.3°98.5°
N9C1'O4'C4'131.5°159.4°
C1'N9C8N7178.8°179.9°
N9C1'C2'C3'98.3°142.8°
N9C1'C2'H1517.0°24.1°
C1'N9C8H181.1°0.0°
O4'C1'C2'H17118.5°118.8°
O4'C1'N9C4178.3°156.5°
O4'C1'C2'O2'102.5°142.7°
O4'C1'N9C80.2°23.6°
O4'C1'C2'C3'20.9°24.0°
C1'O4'C4'C5'158.8°159.3°
C1'O4'C4'C3'40.7°40.5°
C1'O4'C4'H1277.6°78.4°
O4'C1'C2'H15136.2°94.7°
C2'C1'N9C463.9°88.1°
C1'C2'O2'C3'115.7°114.7°
C1'C2'O2'H15120.5°122.7°
C2'C1'N9C8114.2°91.8°
C2'C1'O4'C4'11.9°40.5°
C1'C2'C3'H15115.3°118.6°
C1'C2'C3'C4'43.7°0.0°
C1'C2'C3'O3'165.2°118.7°
C1'C2'C3'H1370.2°118.7°
C1'C2'O2'H16180.0°176.1°
N9C4C5C6179.8°179.9°
N9C4C5N70.1°0.0°
C4N9C8N70.5°0.0°
C4N9C1'H1758.3°34.3°
C4N9C8H18179.5°179.9°
C5C4N9C80.3°0.0°
C4C5C6N7179.6°179.9°
C4C5C6N6179.6°180.0°
C4C5N7C80.4°0.0°
O2'C2'C3'H15124.5°122.6°
O2'C2'C3'C4'76.5°118.8°
O2'C2'C3'O3'45.0°0.1°
O2'C2'C3'H13169.6°122.5°
O2'C2'C1'H1716.0°23.8°
N9C8N7C50.5°0.0°
N9C8N7H18180.0°179.9°
C8N9C1'H17123.6°145.8°
O4'C4'C3'C2'50.9°24.0°
O4'C4'C5'O5'40.3°69.6°
O4'C4'C5'C3'110.5°115.4°
O4'C4'C5'H12124.2°122.4°
O4'C4'C3'H12119.1°119.0°
O4'C4'C3'O3'171.6°142.6°
O4'C4'C5'H1080.0°50.3°
O4'C4'C5'H11160.5°170.4°
O4'C4'C3'H1362.6°94.8°
C4'O4'C1'H17105.7°78.4°
C6C5N7C8180.0°179.9°
C5C6N6H19179.9°0.1°
C5C6N6H2060.1°180.0°
N6C6C5N70.1°0.1°
C6N6H19H20120.0°179.9°
C5N7C8H18179.4°180.0°
OBKSAPO5'NAO124.1°113.6°
OBKSAPO5'OBJ115.0°132.9°
OBKSAPO5'C5'178.6°171.5°
OBKSAPNAOOBJ116.0°132.9°
OBKSAPNAOCAN28.7°48.6°
OBKSAPNAOH9151.3°131.5°
OBLCANNAOSAP45.5°0.1°
OBLCANNAOCAM178.5°179.9°
OBLCANCAMNAL46.8°180.0°
OBLCANCAMCBM133.0°0.1°
OBLCANNAOH9134.5°179.9°
C2'C3'C4'C5'166.3°142.8°
C2'C3'C4'O3'120.7°118.6°
C2'C3'C4'H13113.6°118.8°
C2'C3'O3'H13123.8°122.7°
C2'C3'C4'H1268.2°95.0°
C2'C3'O3'H14180.0°65.4°
C3'C2'O2'H1664.3°61.4°
C3'C2'C1'H17139.4°94.9°
SAPO5'C5'C4'146.6°180.0°
O5'SAPNAOOBJ122.4°113.5°
O5'SAPNAOCAN92.9°65.0°
O5'SAPNAOH987.1°115.0°
SAPO5'C5'H1026.4°60.0°
SAPO5'C5'H1193.1°60.0°
O5'C5'C4'H10120.2°120.0°
O5'C5'C4'H11120.2°120.0°
O5'C5'C4'C3'150.8°175.0°
C5'O5'SAPNAO57.3°75.0°
C5'O5'SAPOBJ63.6°38.6°
O5'C5'H10H11119.3°120.0°
O5'C5'C4'H1283.9°52.8°
C5'C4'C3'H12125.4°122.2°
C5'C4'C3'O3'73.0°98.6°
C4'C5'H10H11119.3°120.0°
C5'C4'C3'H1352.8°24.0°
C4'C3'O3'H13125.1°122.7°
C3'C4'C5'H1030.5°65.0°
C3'C4'C5'H1189.0°55.0°
C4'C3'O3'H1469.0°180.0°
C4'C3'C2'H15159.0°118.6°
SAPNAOCANH9180.0°180.0°
SAPNAOCANCAM136.0°180.0°
OBJSAPNAOCAN144.7°178.5°
OBJSAPNAOH935.3°1.5°
NAOCANCAMNAL131.6°0.1°
NAOCANCAMCBM48.6°179.8°
CANCAMNALCBM179.8°179.9°
CANCAMNALCAK179.8°179.9°
CANCAMCBMSBN179.9°179.8°
CANCAMCBMH80.1°0.0°
CAMCANNAOH944.0°0.1°
O3'C3'C4'H1252.5°23.6°
O3'C3'C2'H1579.5°122.7°
CAFSAGCAHCAI179.5°179.9°
SAGCAFCBPCAE179.0°180.0°
SAGCAFCBPCAB179.5°180.0°
CAFSAGCAHNBO0.9°0.0°
SAGCAFCAENBO0.3°0.0°
SAGCAFCAECAD179.6°180.0°
SAGCAFCBPH50.5°0.1°
SAGCAHCAINBO179.6°179.9°
SAGCAHCAICAJ137.8°180.0°
CAHSAGCAFCBP179.7°180.0°
CAHSAGCAFCAE0.6°0.0°
SAGCAHNBOCAE0.7°0.0°
SAGCAHCAIH642.2°0.1°
NALCAMCBMSBN0.0°0.0°
CAMNALCAKCAJ179.7°180.0°
CAMNALCAKSBN0.1°0.3°
NALCAMCBMH8180.0°179.9°
CBMCAMNALCAK0.0°0.2°
CAMCBMSBNH8180.0°179.8°
CAMCBMSBNCAK0.0°0.2°
CAHCAICAJH6180.0°179.9°
CAHCAICAJCAK179.1°180.0°
CAICAHNBOCAE179.6°179.9°
CAHCAICAJH70.9°0.0°
CAICAJCAKNAL47.0°179.7°
CAJCAICAHNBO41.8°0.1°
CAICAJCAKH7180.0°180.0°
CAICAJCAKSBN132.7°0.0°
CAFCBPCABH5180.0°180.0°
CAFCBPCABOAA179.7°180.0°
CAFCBPCABCAC0.2°0.0°
CBPCAFCAENBO179.4°180.0°
CBPCAFCAECAD0.4°0.0°
CABCBPCAFCAE0.5°0.0°
CBPCABOAACAC179.9°180.0°
CBPCABCACCAD0.1°0.0°
CBPCABCACH3180.0°180.0°
CBPCABOAAH4180.0°90.0°
NALCAKSBNCBM0.0°0.3°
NALCAKCAJSBN179.7°179.7°
NALCAKCAJH7133.0°0.3°
CAFCAENBOCAH0.3°0.0°
CAFCAENBOCAD179.8°180.0°
CAFCAECADCAC0.1°0.0°
CAFCAECADH2179.9°180.0°
CAECAFCBPH5179.5°180.0°
CAHNBOCAECAD179.8°180.0°
NBOCAHCAIH6138.2°180.0°
OAACABCACCAD180.0°180.0°
OAACABCACH30.0°0.0°
OAACABCBPH50.3°0.0°
CBMSBNCAKCAJ179.7°180.0°
CABCACCADCAE0.1°0.0°
CABCACCADH3180.0°180.0°
CABCACCADH2179.9°180.0°
CACCABOAAH40.1°90.0°
CACCABCBPH5179.8°180.0°
CAKCAJCAIH60.9°0.1°
SBNCAKCAJH747.3°179.9°
CAKSBNCBMH8180.0°180.0°
NBOCAECADCAC179.7°180.0°
NBOCAECADH20.3°0.0°
CAECADCACH2180.0°180.0°
CAECADCACH3179.9°180.0°
H2CADCACH30.1°0.0°
H6CAICAJH7179.1°179.9°
H10C5'C4'H12155.8°172.8°
H11C5'C4'H1236.3°67.2°
H12C4'C3'H13178.2°146.2°
H13C3'O3'H1456.1°57.3°
H13C3'C2'H1545.1°0.1°
H15C2'O2'H1659.5°61.2°
H15C2'C1'H17105.3°146.5°

221716

PDB entries from 2024-06-26

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