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Summary Geometry Related PDB entries

GKF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
I12	C11	sing	2.10Å	2.16Å
C06	C07	doub	1.40Å	1.41Å	Aromatic
C06	C05	sing	1.38Å	1.38Å	Aromatic
C11	C07	sing	1.46Å	1.34Å	Aromatic
C11	N10	doub	1.30Å	1.31Å	Aromatic
C07	C08	sing	1.41Å	1.39Å	Aromatic
C05	C04	doub	1.38Å	1.39Å	Aromatic
N10	N09	sing	1.40Å	1.39Å	Aromatic
C08	N09	sing	1.36Å	1.36Å	Aromatic
C08	C03	doub	1.41Å	1.35Å	Aromatic
C04	C03	sing	1.40Å	1.38Å	Aromatic
C03	C01	sing	1.47Å	1.45Å
C01	O02	doub	1.21Å	1.21Å
C01	H1	sing	1.08Å	1.08Å
C04	H2	sing	1.08Å	1.08Å
C05	H3	sing	1.08Å	1.08Å
C06	H4	sing	1.08Å	1.08Å
N09	H5	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
I12	C11	C07	127.9°	126.2°
I12	C11	N10	119.2°	126.1°
C07	C06	C05	117.1°	120.0°
C06	C07	C11	135.0°	133.8°
C06	C07	C08	121.7°	120.0°
C07	C06	H4	121.5°	120.0°
C06	C05	C04	121.2°	120.7°
C06	C05	H3	119.4°	119.7°
C05	C06	H4	121.4°	120.0°
C07	C11	N10	112.9°	107.6°
C11	C07	C08	103.3°	106.2°
C11	N10	N09	108.1°	110.0°
C07	C08	N09	111.3°	106.9°
C07	C08	C03	119.3°	119.4°
C05	C04	C03	119.8°	120.5°
C05	C04	H2	120.1°	119.8°
C04	C05	H3	119.4°	119.6°
N10	N09	C08	104.5°	109.2°
N10	N09	H5	127.7°	125.4°
N09	C08	C03	129.4°	133.7°
C08	N09	H5	127.8°	125.5°
C08	C03	C04	120.9°	119.5°
C08	C03	C01	117.6°	120.3°
C04	C03	C01	121.5°	120.3°
C03	C04	H2	120.1°	119.7°
C03	C01	O02	121.2°	120.0°
C03	C01	H1	119.4°	120.0°
O02	C01	H1	119.4°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
I12	C11	C07	C06	1.4°	0.1°
I12	C11	C07	N10	178.7°	179.9°
I12	C11	C07	C08	178.5°	179.8°
I12	C11	N10	N09	179.1°	179.8°
C07	C06	C05	H4	180.0°	179.7°
C06	C07	C11	C08	179.9°	179.7°
C06	C07	C11	N10	180.0°	179.9°
C07	C06	C05	C04	0.1°	0.0°
C06	C07	C08	N09	179.6°	180.0°
C06	C07	C08	C03	0.1°	0.6°
C07	C06	C05	H3	179.9°	180.0°
C05	C06	C07	C11	179.9°	180.0°
C05	C06	C07	C08	0.2°	0.3°
C06	C05	C04	H3	180.0°	180.0°
C06	C05	C04	C03	0.3°	0.0°
C06	C05	C04	H2	179.7°	179.9°
C07	C11	N10	N09	0.3°	0.4°
C11	C07	C08	N09	0.5°	0.2°
C11	C07	C08	C03	179.8°	179.7°
C11	C07	C06	H4	0.1°	0.3°
N10	C11	C07	C08	0.1°	0.4°
C11	N10	N09	C08	0.6°	0.2°
C11	N10	N09	H5	179.4°	179.7°
C07	C08	N09	N10	0.7°	0.0°
C07	C08	N09	C03	179.6°	179.3°
C07	C08	C03	C04	0.5°	0.6°
C07	C08	C03	C01	178.3°	179.7°
C08	C07	C06	H4	179.8°	180.0°
C07	C08	N09	H5	179.3°	180.0°
C05	C04	C03	C08	0.6°	0.3°
C05	C04	C03	H2	180.0°	179.9°
C05	C04	C03	C01	178.3°	180.0°
C04	C05	C06	H4	179.9°	179.7°
N10	N09	C08	H5	180.0°	180.0°
N10	N09	C08	C03	179.7°	179.4°
N09	C08	C03	C04	179.1°	179.8°
N09	C08	C03	C01	1.3°	0.4°
C08	C03	C04	C01	177.7°	179.7°
C08	C03	C01	O02	2.2°	179.7°
C08	C03	C01	H1	177.8°	0.0°
C08	C03	C04	H2	179.4°	179.8°
C03	C08	N09	H5	0.3°	0.7°
C04	C03	C01	O02	175.6°	0.0°
C04	C03	C01	H1	4.4°	179.7°
C03	C04	C05	H3	179.7°	180.0°
C03	C01	O02	H1	180.0°	179.7°
C01	C03	C04	H2	1.7°	0.1°
H2	C04	C05	H3	0.3°	0.0°
H3	C05	C06	H4	0.1°	0.2°

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PDB entries from 2024-07-17

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