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GKD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N2C2sing1.37Å1.34Å
N2H2N1sing0.97Å1.02Å
N2H2N2sing0.97Å1.02Å
C2N1sing1.36Å1.35ÅAromatic
C2N3doub1.31Å1.32ÅAromatic
N1C6sing1.35Å1.37ÅAromatic
N1H1sing0.97Å1.02Å
N3C4sing1.34Å1.34ÅAromatic
C4C5doub1.40Å1.43ÅAromatic
C4N9sing1.37Å1.30ÅAromatic
C5C6sing1.41Å1.45ÅAromatic
C5N7sing1.35Å1.38ÅAromatic
C6O6doub1.22Å1.28Å
N7C8doub1.30Å1.32ÅAromatic
C8N9sing1.36Å1.36ÅAromatic
C8H8sing1.08Å1.10Å
N9C1'sing1.47Å1.47Å
C1'C2'sing1.54Å1.54Å
C1'O4'sing1.44Å1.41Å
C1'H1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.54Å
C2'H2'sing1.09Å1.11Å
O2'HAsing0.97Å0.95Å
C3'O3'sing1.43Å1.40Å
C3'C4'sing1.55Å1.52Å
C3'H3'sing1.09Å1.11Å
O3'HBsing0.97Å0.95Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.41Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
O5'PAsing1.61Å1.60Å
PAO1Asing1.61Å1.51Å
PAO2Adoub1.48Å1.49Å
PAO3Asing1.61Å1.60Å
O1AH1Asing0.97Å0.95Å
O3APBsing1.61Å1.61Å
PBO2Bdoub1.48Å1.50Å
PBO3Bsing1.61Å1.50Å
PBO1Bsing1.61Å1.58Å
O3BH3Bsing0.97Å0.95Å
O1BC1Gsing1.43Å1.38Å
C1GO5Gsing1.43Å1.45Å
C1GC2Gsing1.53Å1.54Å
C1GH1Gsing1.09Å1.11Å
O5GC5Gsing1.43Å1.44Å
C5GC6Gsing1.53Å1.54Å
C5GC4Gsing1.51Å1.54Å
C5GH5Gsing1.09Å1.12Å
C6GO6Asing1.43Å1.43Å
C6GH6G1sing1.09Å1.12Å
C6GH6G2sing1.09Å1.12Å
O6AH6Asing0.97Å0.95Å
C2GO2Gsing1.43Å1.42Å
C2GC3Gsing1.54Å1.54Å
C2GH2Gsing1.09Å1.12Å
O2GHCsing0.97Å0.95Å
C3GO3Gsing1.43Å1.41Å
C3GC4Gsing1.52Å1.54Å
C3GH3Gsing1.09Å1.12Å
O3GHDsing0.97Å0.95Å
C4GO4Gdoub1.21Å1.23Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N2H2N1117.3°120.0°
C2N2H2N2118.0°120.0°
N2C2N1117.3°119.0°
N2C2N3118.0°119.0°
H2N1N2H2N2124.7°120.0°
N1C2N3124.7°121.9°
C2N1C6122.8°120.3°
C2N1H1118.6°119.8°
C2N3C4116.5°121.1°
C6N1H1118.6°119.8°
N1C6C5115.2°118.3°
N1C6O6119.2°120.8°
N3C4C5123.2°119.7°
N3C4N9130.1°134.2°
C5C4N9106.7°106.1°
C4C5C6117.5°118.6°
C4C5N7107.2°107.3°
C4N9C8108.7°107.5°
C4N9C1'128.1°126.2°
C6C5N7135.1°134.1°
C5C6O6125.5°120.9°
C5N7C8105.9°109.4°
N7C8N9111.5°109.8°
N7C8H8124.2°125.2°
N9C8H8124.2°125.1°
C8N9C1'123.0°126.3°
N9C1'C2'112.3°110.4°
N9C1'O4'112.8°110.3°
N9C1'H1'109.1°110.4°
C2'C1'O4'104.3°104.9°
C2'C1'H1'109.1°110.4°
C1'C2'O2'110.4°110.8°
C1'C2'C3'99.1°104.0°
C1'C2'H2'111.4°110.5°
O4'C1'H1'109.1°110.3°
C1'O4'C4'107.1°105.3°
O2'C2'C3'112.5°110.5°
O2'C2'H2'111.4°110.5°
C2'O2'HA110.4°106.8°
C3'C2'H2'111.4°110.5°
C2'C3'O3'113.7°110.5°
C2'C3'C4'102.2°104.1°
C2'C3'H3'111.2°110.6°
O3'C3'C4'106.9°110.5°
O3'C3'H3'111.2°110.4°
C3'O3'HB113.7°106.8°
C4'C3'H3'111.2°110.5°
C3'C4'O4'108.0°104.8°
C3'C4'C5'114.4°110.5°
C3'C4'H4'109.6°110.3°
O4'C4'C5'105.3°110.4°
O4'C4'H4'109.6°110.4°
C5'C4'H4'109.7°110.3°
C4'C5'O5'110.6°109.5°
C4'C5'H5'1111.8°109.5°
C4'C5'H5'2111.8°109.4°
O5'C5'H5'1111.8°109.5°
O5'C5'H5'2111.8°109.5°
C5'O5'PA124.1°106.8°
H5'1C5'H5'298.6°109.4°
O5'PAO1A109.6°109.5°
O5'PAO2A108.5°109.5°
O5'PAO3A104.2°109.5°
O1APAO2A118.9°109.5°
O1APAO3A109.4°109.4°
PAO1AH1A109.6°106.8°
O2APAO3A105.2°109.4°
PAO3APB137.9°106.8°
O3APBO2B109.5°109.5°
O3APBO3B110.3°109.4°
O3APBO1B105.2°109.5°
O2BPBO3B114.4°109.5°
O2BPBO1B113.1°109.5°
O3BPBO1B103.9°109.5°
PBO3BH3B110.3°106.8°
PBO1BC1G118.4°106.8°
O1BC1GO5G104.3°109.4°
O1BC1GC2G111.6°109.4°
O1BC1GH1G109.5°109.4°
O5GC1GC2G112.2°110.0°
O5GC1GH1G109.5°109.3°
C1GO5GC5G117.9°107.7°
C2GC1GH1G109.5°109.3°
C1GC2GO2G109.5°109.6°
C1GC2GC3G113.5°108.7°
C1GC2GH2G107.6°109.8°
O5GC5GC6G108.9°109.6°
O5GC5GC4G110.7°108.9°
O5GC5GH5G108.6°109.6°
C6GC5GC4G111.4°109.7°
C6GC5GH5G108.6°109.6°
C5GC6GO6A110.3°109.5°
C5GC6GH6G1111.9°109.5°
C5GC6GH6G2111.9°109.4°
C4GC5GH5G108.6°109.6°
C5GC4GC3G117.2°117.6°
C5GC4GO4G122.4°121.2°
O6AC6GH6G1111.9°109.5°
O6AC6GH6G2111.9°109.5°
C6GO6AH6A110.4°106.8°
H6G1C6GH6G298.5°109.5°
O2GC2GC3G110.8°109.6°
O2GC2GH2G107.6°109.6°
C2GO2GHC109.5°106.9°
C3GC2GH2G107.6°109.6°
C2GC3GO3G109.9°110.1°
C2GC3GC4G109.7°107.3°
C2GC3GH3G109.9°109.8°
O3GC3GC4G107.3°109.9°
O3GC3GH3G109.9°109.9°
C3GO3GHD110.0°106.8°
C4GC3GH3G110.0°109.8°
C3GC4GO4G120.0°121.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N2H2N1H2N2178.5°179.7°
N2C2N1N3178.5°179.8°
N2C2N1C6177.5°179.7°
N2C2N1H12.5°0.2°
N2C2N3C4177.5°180.0°
H2N1N2C2N1180.0°179.8°
H2N1N2C2N31.4°0.0°
H2N2N2C2N11.4°0.5°
H2N2N2C2N3180.0°179.6°
C2N1C6H1180.0°179.5°
N1C2N3C41.0°0.2°
C2N1C6C51.7°0.5°
C2N1C6O6179.6°179.7°
N3C2N1C61.0°0.5°
N3C2N1H1179.0°180.0°
C2N3C4C51.8°0.0°
C2N3C4N9179.8°179.9°
N1C6C5C42.4°0.3°
N1C6C5O6178.6°179.8°
N1C6C5N7176.7°179.8°
H1N1C6C5178.3°180.0°
H1N1C6O60.4°0.2°
N3C4C5N9178.7°180.0°
N3C4C5C62.6°0.0°
N3C4C5N7178.4°180.0°
N3C4N9C8179.2°180.0°
N3C4N9C1'4.2°0.1°
C4C5C6N7174.3°180.0°
C4C5C6O6179.0°180.0°
C4C5N7C82.4°0.1°
C5C4N9C82.2°0.0°
C5C4N9C1'177.3°180.0°
N9C4C5C6178.7°180.0°
N9C4C5N72.9°0.1°
C4N9C8N70.7°0.0°
C4N9C8C1'175.4°180.0°
C4N9C8H8179.3°180.0°
C4N9C1'C2'51.8°86.6°
C4N9C1'O4'65.8°157.9°
C4N9C1'H1'172.8°35.7°
C6C5N7C8177.1°180.0°
N7C5C6O64.7°0.0°
C5N7C8N91.2°0.0°
C5N7C8H8178.9°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'176.1°180.0°
C8N9C1'C2'122.7°93.4°
C8N9C1'O4'119.8°22.0°
C8N9C1'H1'1.6°144.2°
H8C8N9C1'3.9°0.0°
N9C1'C2'O4'122.5°118.8°
N9C1'C2'H1'121.0°122.3°
N9C1'O4'H1'121.4°122.2°
N9C1'C2'O2'75.4°98.6°
N9C1'C2'C3'166.4°142.7°
N9C1'C2'H2'49.0°24.1°
N9C1'O4'C4'156.1°159.4°
C2'C1'O4'H1'116.5°118.9°
C1'C2'O2'C3'109.6°114.7°
C1'C2'O2'H2'124.4°122.7°
C1'C2'C3'H2'117.4°118.5°
C1'C2'O2'HA180.0°176.2°
C1'C2'C3'O3'78.7°118.8°
C1'C2'C3'C4'36.2°0.1°
C1'C2'C3'H3'154.9°118.6°
C2'C1'O4'C4'34.0°40.5°
O4'C1'C2'O2'162.1°142.6°
O4'C1'C2'C3'43.9°23.9°
O4'C1'C2'H2'73.5°94.7°
C1'O4'C4'C3'9.8°40.5°
C1'O4'C4'C5'132.5°159.5°
C1'O4'C4'H4'109.6°78.3°
H1'C1'C2'O2'45.6°23.7°
H1'C1'C2'C3'72.6°95.0°
H1'C1'C2'H2'170.0°146.4°
H1'C1'O4'C4'82.5°78.4°
O2'C2'C3'H2'126.0°122.6°
O2'C2'C3'O3'37.9°0.1°
O2'C2'C3'C4'152.8°118.8°
O2'C2'C3'H3'88.5°122.5°
C3'C2'O2'HA70.4°61.5°
C2'C3'O3'C4'112.0°114.7°
C2'C3'O3'H3'126.5°122.7°
C2'C3'C4'H3'118.7°118.7°
C2'C3'O3'HB180.0°65.4°
C2'C3'C4'O4'18.2°24.1°
C2'C3'C4'C5'98.7°142.9°
C2'C3'C4'H4'137.6°94.8°
H2'C2'O2'HA55.6°61.1°
H2'C2'C3'O3'163.9°122.7°
H2'C2'C3'C4'81.2°118.6°
H2'C2'C3'H3'37.5°0.1°
O3'C3'C4'H3'121.6°122.6°
O3'C3'C4'O4'101.5°142.8°
O3'C3'C4'C5'141.5°98.4°
O3'C3'C4'H4'17.9°23.9°
C4'C3'O3'HB68.0°179.9°
C3'C4'O4'C5'122.7°118.9°
C3'C4'O4'H4'119.4°118.8°
C3'C4'C5'H4'123.6°122.3°
C3'C4'C5'O5'43.7°178.1°
C3'C4'C5'H5'181.6°58.1°
C3'C4'C5'H5'2168.9°61.9°
H3'C3'O3'HB53.5°57.4°
H3'C3'C4'O4'136.9°94.7°
H3'C3'C4'C5'20.0°24.2°
H3'C3'C4'H4'103.7°146.5°
O4'C4'C5'H4'117.9°122.3°
O4'C4'C5'O5'74.8°66.5°
O4'C4'C5'H5'1160.0°173.5°
O4'C4'C5'H5'250.4°53.6°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.2°120.0°
C4'C5'H5'1H5'2117.7°119.9°
C4'C5'O5'PA175.2°180.0°
H4'C4'C5'O5'167.3°55.9°
H4'C4'C5'H5'142.1°64.2°
H4'C4'C5'H5'267.4°175.9°
O5'C5'H5'1H5'2117.7°120.0°
C5'O5'PAO1A36.4°65.1°
C5'O5'PAO2A167.6°55.0°
C5'O5'PAO3A80.6°175.0°
H5'1C5'O5'PA59.5°60.0°
H5'2C5'O5'PA49.9°60.0°
O5'PAO1AO2A125.5°120.1°
O5'PAO1AO3A113.7°120.0°
O5'PAO2AO3A111.1°120.0°
O5'PAO1AH1A180.0°59.9°
O5'PAO3APB45.4°165.0°
O1APAO2AO3A122.9°119.9°
O1APAO3APB71.8°75.0°
O2APAO1AH1A54.5°180.0°
O2APAO3APB159.4°45.0°
O3APAO1AH1A66.3°60.1°
PAO3APBO2B47.1°40.0°
PAO3APBO3B79.6°80.0°
PAO3APBO1B168.9°160.0°
O3APBO2BO3B124.4°120.0°
O3APBO2BO1B117.0°120.0°
O3APBO3BO1B112.4°120.0°
O3APBO3BH3B180.0°60.0°
O3APBO1BC1G55.7°175.0°
O2BPBO3BO1B123.7°120.0°
O2BPBO3BH3B56.1°180.0°
O2BPBO1BC1G63.8°55.0°
O3BPBO1BC1G171.7°65.0°
O1BPBO3BH3B67.6°60.0°
PBO1BC1GO5G104.7°89.7°
PBO1BC1GC2G134.0°149.7°
PBO1BC1GH1G12.5°30.0°
O1BC1GO5GC2G120.9°120.2°
O1BC1GO5GH1G117.2°119.7°
O1BC1GC2GH1G121.5°119.7°
O1BC1GO5GC5G174.0°168.4°
O1BC1GC2GO2G68.6°55.0°
O1BC1GC2GC3G167.0°174.7°
O1BC1GC2GH2G48.1°65.4°
O5GC1GC2GH1G121.9°120.1°
C1GO5GC5GC6G172.1°178.4°
C1GO5GC5GC4G49.4°61.6°
C1GO5GC5GH5G69.8°58.2°
O5GC1GC2GO2G174.7°175.2°
O5GC1GC2GC3G50.3°65.1°
O5GC1GC2GH2G68.6°54.8°
C2GC1GO5GC5G53.0°71.4°
C1GC2GO2GC3G125.9°119.2°
C1GC2GO2GH2G116.7°120.5°
C1GC2GC3GH2G118.9°120.0°
C1GC2GO2GHC180.0°179.2°
C1GC2GC3GO3G71.4°70.6°
C1GC2GC3GC4G46.4°48.9°
C1GC2GC3GH3G167.4°168.2°
H1GC1GO5GC5G68.9°48.7°
H1GC1GC2GO2G52.8°64.7°
H1GC1GC2GC3G71.5°55.0°
H1GC1GC2GH2G169.5°174.9°
O5GC5GC6GC4G122.3°119.4°
O5GC5GC6GH5G118.1°120.2°
O5GC5GC4GH5G119.2°119.8°
O5GC5GC6GO6A47.3°65.0°
O5GC5GC6GH6G1172.6°55.0°
O5GC5GC6GH6G278.0°175.0°
O5GC5GC4GC3G45.8°52.0°
O5GC5GC4GO4G141.5°127.9°
C6GC5GC4GH5G119.6°120.3°
C5GC6GO6AH6G1125.3°120.1°
C5GC6GO6AH6G2125.2°119.9°
C5GC6GH6G1H6G2117.8°119.9°
C5GC6GO6AH6A180.0°180.0°
C6GC5GC4GC3G167.1°171.9°
C6GC5GC4GO4G20.2°8.1°
C4GC5GC6GO6A169.6°175.5°
C4GC5GC6GH6G165.2°64.4°
C4GC5GC6GH6G244.3°55.6°
C5GC4GC3GC2G45.3°45.6°
C5GC4GC3GO3G74.2°74.1°
C5GC4GC3GO4G172.9°180.0°
C5GC4GC3GH3G166.3°164.9°
H5GC5GC6GO6A70.8°55.2°
H5GC5GC6GH6G154.4°175.3°
H5GC5GC6GH6G2163.9°64.8°
H5GC5GC4GC3G73.3°67.8°
H5GC5GC4GO4G99.4°112.2°
O6AC6GH6G1H6G2117.8°120.0°
H6G1C6GO6AH6A54.8°60.0°
H6G2C6GO6AH6A54.7°60.1°
O2GC2GC3GH2G117.4°120.3°
O2GC2GC3GO3G52.3°49.1°
O2GC2GC3GC4G170.1°168.6°
O2GC2GC3GH3G68.9°72.0°
C3GC2GO2GHC54.1°60.0°
C2GC3GO3GC4G119.2°118.0°
C2GC3GO3GH3G121.2°121.1°
C2GC3GC4GH3G121.0°119.4°
C2GC3GO3GHD180.0°178.0°
C2GC3GC4GO4G141.9°134.4°
H2GC2GO2GHC63.3°60.3°
H2GC2GC3GO3G169.6°169.4°
H2GC2GC3GC4G72.6°71.1°
H2GC2GC3GH3G48.5°48.3°
O3GC3GC4GH3G119.6°121.0°
O3GC3GC4GO4G98.7°105.9°
C4GC3GO3GHD60.7°60.0°
H3GC3GO3GHD58.9°60.9°
H3GC3GC4GO4G20.8°15.0°

221371

PDB entries from 2024-06-19

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