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SummaryGeometryRelated PDB entries

GIO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OPCPdoub1.21Å1.23Å
CPCAPsing1.51Å1.53Å
CPNsing1.35Å1.40Å
CAPCBPsing1.55Å1.53Å
CAPNPsing1.48Å1.47Å
CAPHAPsing1.09Å1.12Å
CBPCGPsing1.55Å1.53Å
CBPHBP1sing1.09Å1.12Å
CBPHBP2sing1.09Å1.12Å
CGPCDPsing1.54Å1.53Å
CGPHGP1sing1.09Å1.11Å
CGPHGP2sing1.09Å1.11Å
CDPNPsing1.48Å1.48Å
CDPHDP1sing1.09Å1.12Å
CDPHDP2sing1.09Å1.11Å
NPCsing1.35Å1.40Å
COdoub1.21Å1.23Å
CCAsing1.51Å1.53Å
CANsing1.46Å1.48Å
CAHAC1sing1.09Å1.12Å
CAHAC2sing1.09Å1.12Å
NHsing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OPCPCAP120.6°120.1°
OPCPN120.4°120.1°
CAPCPN119.0°119.7°
CPCAPCBP111.0°109.7°
CPCAPNP112.2°107.7°
CPCAPHAP111.0°111.3°
CPNCA120.7°121.7°
CPNH119.7°119.2°
CBPCAPNP100.2°105.2°
CBPCAPHAP111.0°111.4°
CAPCBPCGP99.6°101.5°
CAPCBPHBP1116.0°111.0°
CAPCBPHBP2116.0°111.1°
NPCAPHAP111.0°111.3°
CAPNPCDP111.8°108.2°
CAPNPC119.0°123.1°
CGPCBPHBP1116.0°111.0°
CGPCBPHBP2116.0°111.1°
CBPCGPCDP101.9°103.1°
CBPCGPHGP1115.1°110.7°
CBPCGPHGP2115.1°110.7°
HBP1CBPHBP294.4°110.9°
CDPCGPHGP1115.1°110.8°
CDPCGPHGP2115.1°110.7°
CGPCDPNP101.4°107.3°
CGPCDPHDP1115.3°109.9°
CGPCDPHDP2115.3°109.9°
HGP1CGPHGP295.4°110.7°
NPCDPHDP1115.3°110.5°
NPCDPHDP2115.3°109.1°
CDPNPC129.0°128.6°
HDP1CDPHDP295.2°110.1°
NPCO119.6°121.2°
NPCCA120.9°117.7°
OCCA119.5°121.1°
CCAN109.7°109.8°
CCAHAC1112.1°109.4°
CCAHAC2112.1°109.4°
NCAHAC1112.1°109.5°
NCAHAC2112.1°109.4°
CANH119.6°119.2°
HAC1CAHAC298.3°109.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OPCPCAPN179.3°180.0°
OPCPCAPCBP36.4°32.5°
OPCPCAPNP147.6°146.5°
OPCPCAPHAP87.6°91.2°
OPCPNCA177.3°178.4°
OPCPNH2.7°1.7°
CPCAPCBPNP118.7°115.6°
CPCAPCBPHAP124.0°123.7°
CPCAPNPHAP124.8°122.2°
CPCAPCBPCGP163.0°152.9°
CPCAPCBPHBP171.7°34.9°
CPCAPCBPHBP237.8°89.0°
CPCAPNPCDP142.7°141.6°
CPCAPNPC32.8°36.1°
CAPCPNCA3.4°1.5°
CAPCPNH176.6°178.4°
NCPCAPCBP142.9°147.5°
NCPCAPNP31.7°33.5°
NCPCAPHAP93.1°88.7°
CPNCAC34.9°35.4°
CPNCAH180.0°179.9°
CPNCAHAC1160.2°155.6°
CPNCAHAC290.3°84.6°
CBPCAPNPHAP117.4°120.8°
CAPCBPCGPHBP1125.3°118.0°
CAPCBPCGPHBP2125.2°118.2°
CAPCBPHBP1HBP2121.8°124.0°
CAPCBPCGPCDP49.0°35.4°
CAPCBPCGPHGP176.3°153.9°
CAPCBPCGPHGP2174.3°83.0°
CBPCAPNPCDP24.8°24.6°
CBPCAPNPC150.6°153.1°
NPCAPCBPCGP44.3°37.3°
NPCAPCBPHBP1169.6°80.7°
NPCAPCBPHBP280.9°155.4°
CAPNPCDPCGP5.3°1.5°
CAPNPCDPC174.9°177.5°
CAPNPCDPHDP1120.0°121.3°
CAPNPCDPHDP2130.5°117.5°
CAPNPCO180.0°176.4°
CAPNPCCA0.1°3.3°
HAPCAPCBPCGP73.0°83.4°
HAPCAPCBPHBP152.2°158.6°
HAPCAPCBPHBP2161.7°34.7°
HAPCAPNPCDP92.5°96.2°
HAPCAPNPC92.0°86.1°
CGPCBPHBP1HBP2121.8°123.9°
CBPCGPCDPHGP1125.3°118.4°
CBPCGPCDPHGP2125.3°118.4°
CBPCGPHGP1HGP2121.0°123.1°
CBPCGPCDPNP33.4°21.8°
CBPCGPCDPHDP191.8°98.4°
CBPCGPCDPHDP2158.7°140.3°
HBP1CBPCGPCDP174.3°82.6°
HBP1CBPCGPHGP149.0°35.9°
HBP1CBPCGPHGP260.5°159.0°
HBP2CBPCGPCDP76.2°153.5°
HBP2CBPCGPHGP1158.5°88.0°
HBP2CBPCGPHGP249.0°35.2°
CDPCGPHGP1HGP2120.9°123.2°
CGPCDPNPHDP1125.3°119.8°
CGPCDPNPHDP2125.2°119.0°
CGPCDPHDP1HDP2121.1°121.2°
CGPCDPNPC179.8°176.0°
HGP1CGPCDPNP91.8°140.3°
HGP1CGPCDPHDP1142.9°20.0°
HGP1CGPCDPHDP233.4°101.2°
HGP2CGPCDPNP158.7°96.5°
HGP2CGPCDPHDP133.4°143.2°
HGP2CGPCDPHDP276.0°22.0°
NPCDPHDP1HDP2121.1°120.6°
CDPNPCO5.4°6.4°
CDPNPCCA174.5°173.9°
HDP1CDPNPC54.9°56.2°
HDP2CDPNPC54.6°64.9°
NPCOCA179.9°179.7°
NPCCAN33.8°32.8°
NPCCAHAC1159.1°152.9°
NPCCAHAC291.4°87.3°
OCCAN146.1°147.5°
OCCAHAC120.8°27.4°
OCCAHAC288.7°92.4°
CCANHAC1125.3°120.1°
CCANHAC2125.2°120.1°
CCAHAC1HAC2118.0°119.8°
CCANH145.1°144.5°
NCAHAC1HAC2118.1°119.9°
HAC1CANH19.8°24.4°
HAC2CANH89.7°95.5°

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PDB entries from 2024-08-07

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