GH3
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
PG | O1G | doub | 1.48Å | 1.51Å | |
PG | O2G | sing | 1.61Å | 1.48Å | |
PG | O3G | sing | 1.61Å | 1.57Å | |
PG | O3B | sing | 1.61Å | 1.69Å | |
O2G | HOG2 | sing | 0.97Å | 0.95Å | |
O3G | HOG3 | sing | 0.97Å | 0.95Å | |
O3B | PB | sing | 1.61Å | 1.65Å | |
PB | O1B | doub | 1.48Å | 1.46Å | |
PB | O2B | sing | 1.61Å | 1.44Å | |
PB | O3A | sing | 1.61Å | 1.57Å | |
O2B | HOB2 | sing | 0.97Å | 0.95Å | |
O3A | PA | sing | 1.61Å | 1.66Å | |
PA | O1A | doub | 1.48Å | 1.48Å | |
PA | O2A | sing | 1.61Å | 1.48Å | |
PA | O5' | sing | 1.61Å | 1.56Å | |
O2A | HOA2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.44Å | 1.48Å | |
C4' | C3' | sing | 1.55Å | 1.56Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.45Å | |
C3' | C2' | sing | 1.55Å | 1.55Å | |
C3' | H3'2 | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C2' | O2' | sing | 1.43Å | 1.47Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N7 | C5 | sing | 1.36Å | 1.38Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.45Å | |
C5 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.22Å | |
C6 | N1 | sing | 1.35Å | 1.40Å | |
N1 | C2 | sing | 1.36Å | 1.42Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.33Å | |
C2 | N3 | doub | 1.31Å | 1.34Å | |
N2 | HN21 | sing | 0.97Å | 1.00Å | |
N2 | HN22 | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.36Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1G | PG | O2G | 112.1° | 109.5° |
O1G | PG | O3G | 106.0° | 109.5° |
O1G | PG | O3B | 106.7° | 109.5° |
O2G | PG | O3G | 110.9° | 109.4° |
O2G | PG | O3B | 114.7° | 109.5° |
PG | O2G | HOG2 | 109.5° | 106.8° |
O3G | PG | O3B | 105.9° | 109.5° |
PG | O3G | HOG3 | 109.5° | 106.8° |
PG | O3B | PB | 126.1° | 106.8° |
O3B | PB | O1B | 104.2° | 109.5° |
O3B | PB | O2B | 110.6° | 109.5° |
O3B | PB | O3A | 115.4° | 109.4° |
O1B | PB | O2B | 111.3° | 109.5° |
O1B | PB | O3A | 108.1° | 109.5° |
O2B | PB | O3A | 107.2° | 109.5° |
PB | O2B | HOB2 | 109.5° | 106.8° |
PB | O3A | PA | 130.4° | 106.8° |
O3A | PA | O1A | 104.3° | 109.5° |
O3A | PA | O2A | 111.4° | 109.5° |
O3A | PA | O5' | 108.2° | 109.5° |
O1A | PA | O2A | 119.8° | 109.5° |
O1A | PA | O5' | 104.4° | 109.5° |
O2A | PA | O5' | 108.2° | 109.5° |
PA | O2A | HOA2 | 109.5° | 106.8° |
PA | O5' | C5' | 129.4° | 106.8° |
O5' | C5' | C4' | 102.6° | 109.5° |
O5' | C5' | H5' | 113.3° | 109.4° |
O5' | C5' | H5'' | 111.8° | 109.5° |
C4' | C5' | H5' | 113.3° | 109.5° |
C4' | C5' | H5'' | 111.8° | 109.5° |
C5' | C4' | O4' | 117.6° | 110.4° |
C5' | C4' | C3' | 112.8° | 110.4° |
C5' | C4' | H4' | 100.3° | 110.3° |
H5' | C5' | H5'' | 104.3° | 109.5° |
O4' | C4' | C3' | 107.6° | 104.8° |
O4' | C4' | H4' | 106.3° | 110.4° |
C4' | O4' | C1' | 107.3° | 105.3° |
C3' | C4' | H4' | 111.9° | 110.4° |
C4' | C3' | C2' | 102.8° | 104.0° |
C4' | C3' | H3'2 | 113.2° | 110.5° |
C4' | C3' | H3' | 111.7° | 110.5° |
O4' | C1' | C2' | 109.1° | 104.9° |
O4' | C1' | N9 | 106.3° | 110.4° |
O4' | C1' | H1' | 114.0° | 110.4° |
C2' | C3' | H3'2 | 113.1° | 110.6° |
C2' | C3' | H3' | 111.8° | 110.5° |
C3' | C2' | O2' | 115.9° | 110.5° |
C3' | C2' | C1' | 101.7° | 104.0° |
C3' | C2' | H2' | 112.8° | 110.5° |
H3'2 | C3' | H3' | 104.5° | 110.5° |
O2' | C2' | C1' | 115.3° | 110.8° |
O2' | C2' | H2' | 98.3° | 110.4° |
C2' | O2' | HO2' | 109.5° | 106.8° |
C1' | C2' | H2' | 113.4° | 110.5° |
C2' | C1' | N9 | 115.2° | 110.4° |
C2' | C1' | H1' | 104.9° | 110.4° |
N9 | C1' | H1' | 107.7° | 110.3° |
C1' | N9 | C8 | 132.7° | 126.3° |
C1' | N9 | C4 | 124.4° | 126.2° |
C8 | N9 | C4 | 102.9° | 107.5° |
N9 | C8 | N7 | 117.3° | 109.9° |
N9 | C8 | H8 | 121.4° | 125.1° |
N9 | C4 | C5 | 108.5° | 106.1° |
N9 | C4 | N3 | 124.1° | 134.2° |
N7 | C8 | H8 | 121.4° | 125.1° |
C8 | N7 | C5 | 102.0° | 109.3° |
N7 | C5 | C6 | 132.1° | 134.2° |
N7 | C5 | C4 | 109.3° | 107.3° |
C6 | C5 | C4 | 118.5° | 118.6° |
C5 | C6 | O6 | 129.9° | 120.8° |
C5 | C6 | N1 | 112.9° | 118.4° |
C5 | C4 | N3 | 127.4° | 119.7° |
O6 | C6 | N1 | 117.2° | 120.8° |
C6 | N1 | C2 | 124.2° | 120.3° |
C6 | N1 | HN1 | 117.9° | 119.8° |
C2 | N1 | HN1 | 117.9° | 119.8° |
N1 | C2 | N2 | 119.7° | 119.0° |
N1 | C2 | N3 | 122.6° | 121.9° |
N2 | C2 | N3 | 117.7° | 119.0° |
C2 | N2 | HN21 | 125.3° | 120.0° |
C2 | N2 | HN22 | 109.5° | 120.0° |
C2 | N3 | C4 | 114.3° | 121.1° |
HN21 | N2 | HN22 | 125.2° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1G | PG | O2G | O3G | 118.2° | 120.0° |
O1G | PG | O2G | O3B | 121.9° | 120.0° |
O1G | PG | O3G | O3B | 113.1° | 120.0° |
O1G | PG | O2G | HOG2 | 108.9° | 60.0° |
O1G | PG | O3G | HOG3 | 86.5° | 180.0° |
O1G | PG | O3B | PB | 132.8° | 45.0° |
O2G | PG | O3G | O3B | 125.1° | 120.0° |
O2G | PG | O3G | HOG3 | 35.4° | 60.0° |
O2G | PG | O3B | PB | 8.0° | 165.0° |
O3G | PG | O2G | HOG2 | 132.8° | 60.0° |
O3G | PG | O3B | PB | 114.7° | 75.0° |
O3B | PG | O2G | HOG2 | 12.9° | 180.0° |
O3B | PG | O3G | HOG3 | 160.4° | 60.0° |
PG | O3B | PB | O1B | 81.0° | 40.0° |
PG | O3B | PB | O2B | 38.8° | 80.0° |
PG | O3B | PB | O3A | 160.7° | 160.0° |
O3B | PB | O1B | O2B | 119.3° | 120.0° |
O3B | PB | O1B | O3A | 123.2° | 119.9° |
O3B | PB | O2B | O3A | 126.6° | 120.0° |
O3B | PB | O2B | HOB2 | 146.6° | 60.0° |
O3B | PB | O3A | PA | 47.1° | 165.0° |
O1B | PB | O2B | O3A | 118.1° | 120.0° |
O1B | PB | O2B | HOB2 | 98.0° | 180.0° |
O1B | PB | O3A | PA | 69.1° | 45.0° |
O2B | PB | O3A | PA | 170.8° | 75.0° |
O3A | PB | O2B | HOB2 | 20.0° | 60.0° |
PB | O3A | PA | O1A | 148.9° | 40.0° |
PB | O3A | PA | O2A | 18.4° | 80.0° |
PB | O3A | PA | O5' | 100.4° | 160.0° |
O3A | PA | O1A | O2A | 125.4° | 120.0° |
O3A | PA | O1A | O5' | 113.4° | 120.0° |
O3A | PA | O2A | O5' | 118.8° | 120.0° |
O3A | PA | O2A | HOA2 | 0.2° | 60.0° |
O3A | PA | O5' | C5' | 71.7° | 175.0° |
O1A | PA | O2A | O5' | 119.3° | 120.0° |
O1A | PA | O2A | HOA2 | 121.7° | 180.0° |
O1A | PA | O5' | C5' | 177.6° | 55.0° |
O2A | PA | O5' | C5' | 49.0° | 65.0° |
O5' | PA | O2A | HOA2 | 119.0° | 60.0° |
PA | O5' | C5' | C4' | 178.0° | 180.0° |
PA | O5' | C5' | H5' | 55.5° | 60.0° |
PA | O5' | C5' | H5'' | 62.0° | 59.9° |
O5' | C5' | C4' | H5' | 122.5° | 119.9° |
O5' | C5' | C4' | H5'' | 120.0° | 120.1° |
O5' | C5' | H5' | H5'' | 121.8° | 120.0° |
O5' | C5' | C4' | O4' | 90.2° | 66.5° |
O5' | C5' | C4' | C3' | 36.0° | 178.1° |
O5' | C5' | C4' | H4' | 155.1° | 55.8° |
C4' | C5' | H5' | H5'' | 121.8° | 120.0° |
C5' | C4' | O4' | C3' | 128.6° | 118.9° |
C5' | C4' | O4' | H4' | 111.4° | 122.2° |
C5' | C4' | C3' | H4' | 112.2° | 122.3° |
C5' | C4' | O4' | C1' | 132.9° | 159.4° |
C5' | C4' | C3' | C2' | 154.9° | 142.9° |
C5' | C4' | C3' | H3'2 | 82.7° | 24.2° |
C5' | C4' | C3' | H3' | 34.9° | 98.5° |
H5' | C5' | C4' | O4' | 32.3° | 173.6° |
H5' | C5' | C4' | C3' | 158.5° | 58.1° |
H5' | C5' | C4' | H4' | 82.4° | 64.2° |
H5'' | C5' | C4' | O4' | 149.8° | 53.6° |
H5'' | C5' | C4' | C3' | 84.0° | 61.9° |
H5'' | C5' | C4' | H4' | 35.1° | 175.8° |
O4' | C4' | C3' | H4' | 116.4° | 118.9° |
O4' | C4' | C3' | C2' | 23.5° | 24.1° |
O4' | C4' | C3' | H3'2 | 145.9° | 94.7° |
O4' | C4' | C3' | H3' | 96.5° | 142.7° |
C4' | O4' | C1' | C2' | 17.5° | 40.5° |
C4' | O4' | C1' | N9 | 107.2° | 159.3° |
C4' | O4' | C1' | H1' | 134.3° | 78.4° |
C3' | C4' | O4' | C1' | 4.2° | 40.5° |
C4' | C3' | C2' | H3'2 | 122.4° | 118.7° |
C4' | C3' | C2' | H3' | 120.0° | 118.6° |
C4' | C3' | H3'2 | H3' | 121.8° | 122.6° |
C4' | C3' | C2' | O2' | 93.7° | 118.8° |
C4' | C3' | C2' | C1' | 32.3° | 0.1° |
C4' | C3' | C2' | H2' | 154.1° | 118.7° |
H4' | C4' | O4' | C1' | 115.8° | 78.3° |
H4' | C4' | C3' | C2' | 92.9° | 94.8° |
H4' | C4' | C3' | H3'2 | 29.5° | 146.4° |
H4' | C4' | C3' | H3' | 147.1° | 23.8° |
O4' | C1' | C2' | C3' | 31.8° | 23.9° |
O4' | C1' | C2' | O2' | 94.5° | 142.6° |
O4' | C1' | C2' | N9 | 119.4° | 118.9° |
O4' | C1' | C2' | H1' | 122.5° | 118.9° |
O4' | C1' | C2' | H2' | 153.2° | 94.7° |
O4' | C1' | N9 | H1' | 122.5° | 122.3° |
O4' | C1' | N9 | C8 | 37.2° | 22.0° |
O4' | C1' | N9 | C4 | 142.5° | 157.9° |
C2' | C3' | H3'2 | H3' | 121.8° | 122.7° |
C3' | C2' | O2' | C1' | 118.7° | 114.7° |
C3' | C2' | O2' | H2' | 120.4° | 122.5° |
C3' | C2' | C1' | H2' | 121.4° | 118.6° |
C3' | C2' | O2' | HO2' | 87.7° | 61.5° |
C3' | C2' | C1' | N9 | 87.6° | 142.7° |
C3' | C2' | C1' | H1' | 154.3° | 95.1° |
H3'2 | C3' | C2' | O2' | 28.8° | 122.5° |
H3'2 | C3' | C2' | C1' | 154.7° | 118.5° |
H3'2 | C3' | C2' | H2' | 83.5° | 0.0° |
H3' | C3' | C2' | O2' | 146.3° | 0.2° |
H3' | C3' | C2' | C1' | 87.7° | 118.7° |
H3' | C3' | C2' | H2' | 34.1° | 122.7° |
O2' | C2' | C1' | H2' | 112.3° | 122.7° |
O2' | C2' | C1' | N9 | 146.1° | 98.6° |
O2' | C2' | C1' | H1' | 27.9° | 23.6° |
C1' | C2' | O2' | HO2' | 153.6° | 176.2° |
C2' | C1' | N9 | H1' | 116.6° | 122.2° |
C2' | C1' | N9 | C8 | 83.7° | 93.5° |
C2' | C1' | N9 | C4 | 96.6° | 86.6° |
H2' | C2' | O2' | HO2' | 32.7° | 61.1° |
H2' | C2' | C1' | N9 | 33.8° | 24.2° |
H2' | C2' | C1' | H1' | 84.4° | 146.3° |
C1' | N9 | C8 | C4 | 179.8° | 180.0° |
C1' | N9 | C8 | N7 | 179.7° | 180.0° |
C1' | N9 | C8 | H8 | 0.3° | 0.1° |
C1' | N9 | C4 | C5 | 179.9° | 180.0° |
C1' | N9 | C4 | N3 | 0.5° | 0.1° |
H1' | C1' | N9 | C8 | 159.8° | 144.3° |
H1' | C1' | N9 | C4 | 20.0° | 35.7° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.3° | 0.0° |
C8 | N9 | C4 | C5 | 0.3° | 0.0° |
C8 | N9 | C4 | N3 | 179.7° | 180.0° |
C4 | N9 | C8 | N7 | 0.0° | 0.0° |
C4 | N9 | C8 | H8 | 180.0° | 180.0° |
N9 | C4 | C5 | N7 | 0.5° | 0.0° |
N9 | C4 | C5 | C6 | 179.4° | 180.0° |
N9 | C4 | C5 | N3 | 179.4° | 180.0° |
N9 | C4 | N3 | C2 | 179.8° | 180.0° |
C8 | N7 | C5 | C6 | 179.1° | 180.0° |
C8 | N7 | C5 | C4 | 0.5° | 0.0° |
H8 | C8 | N7 | C5 | 179.7° | 180.0° |
N7 | C5 | C6 | C4 | 178.6° | 180.0° |
N7 | C5 | C6 | O6 | 1.5° | 0.0° |
N7 | C5 | C6 | N1 | 179.6° | 179.7° |
N7 | C5 | C4 | N3 | 179.9° | 180.0° |
C5 | C6 | O6 | N1 | 178.9° | 179.7° |
C5 | C6 | N1 | C2 | 0.7° | 0.5° |
C5 | C6 | N1 | HN1 | 179.2° | 180.0° |
C6 | C5 | C4 | N3 | 1.2° | 0.0° |
C4 | C5 | C6 | O6 | 180.0° | 180.0° |
C4 | C5 | C6 | N1 | 1.0° | 0.3° |
C5 | C4 | N3 | C2 | 0.8° | 0.0° |
O6 | C6 | N1 | C2 | 179.8° | 179.7° |
O6 | C6 | N1 | HN1 | 0.2° | 0.3° |
C6 | N1 | C2 | HN1 | 180.0° | 179.4° |
C6 | N1 | C2 | N2 | 179.7° | 179.7° |
C6 | N1 | C2 | N3 | 0.4° | 0.6° |
N1 | C2 | N2 | N3 | 179.8° | 179.7° |
N1 | C2 | N2 | HN21 | 0.0° | 179.8° |
N1 | C2 | N2 | HN22 | 180.0° | 0.6° |
N1 | C2 | N3 | C4 | 0.4° | 0.3° |
HN1 | N1 | C2 | N2 | 0.3° | 0.3° |
HN1 | N1 | C2 | N3 | 179.6° | 180.0° |
C2 | N2 | HN21 | HN22 | 180.0° | 179.6° |
N2 | C2 | N3 | C4 | 179.8° | 180.0° |
N3 | C2 | N2 | HN21 | 179.8° | 0.1° |
N3 | C2 | N2 | HN22 | 0.2° | 179.7° |