Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

GH3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PGO1Gdoub1.48Å1.51Å
PGO2Gsing1.61Å1.48Å
PGO3Gsing1.61Å1.57Å
PGO3Bsing1.61Å1.69Å
O2GHOG2sing0.97Å0.95Å
O3GHOG3sing0.97Å0.95Å
O3BPBsing1.61Å1.65Å
PBO1Bdoub1.48Å1.46Å
PBO2Bsing1.61Å1.44Å
PBO3Asing1.61Å1.57Å
O2BHOB2sing0.97Å0.95Å
O3APAsing1.61Å1.66Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.48Å
PAO5'sing1.61Å1.56Å
O2AHOA2sing0.97Å0.95Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.52Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C4'O4'sing1.44Å1.48Å
C4'C3'sing1.55Å1.56Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.45Å
C3'C2'sing1.55Å1.55Å
C3'H3'2sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'O2'sing1.43Å1.47Å
C2'C1'sing1.54Å1.53Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.47Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.37ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
C8N7doub1.30Å1.31ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.36Å1.38ÅAromatic
C5C6sing1.41Å1.45Å
C5C4doub1.40Å1.40ÅAromatic
C6O6doub1.22Å1.22Å
C6N1sing1.35Å1.40Å
N1C2sing1.36Å1.42Å
N1HN1sing0.97Å1.00Å
C2N2sing1.37Å1.33Å
C2N3doub1.31Å1.34Å
N2HN21sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
N3C4sing1.34Å1.36Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1GPGO2G112.1°109.5°
O1GPGO3G106.0°109.5°
O1GPGO3B106.7°109.5°
O2GPGO3G110.9°109.4°
O2GPGO3B114.7°109.5°
PGO2GHOG2109.5°106.8°
O3GPGO3B105.9°109.5°
PGO3GHOG3109.5°106.8°
PGO3BPB126.1°106.8°
O3BPBO1B104.2°109.5°
O3BPBO2B110.6°109.5°
O3BPBO3A115.4°109.4°
O1BPBO2B111.3°109.5°
O1BPBO3A108.1°109.5°
O2BPBO3A107.2°109.5°
PBO2BHOB2109.5°106.8°
PBO3APA130.4°106.8°
O3APAO1A104.3°109.5°
O3APAO2A111.4°109.5°
O3APAO5'108.2°109.5°
O1APAO2A119.8°109.5°
O1APAO5'104.4°109.5°
O2APAO5'108.2°109.5°
PAO2AHOA2109.5°106.8°
PAO5'C5'129.4°106.8°
O5'C5'C4'102.6°109.5°
O5'C5'H5'113.3°109.4°
O5'C5'H5''111.8°109.5°
C4'C5'H5'113.3°109.5°
C4'C5'H5''111.8°109.5°
C5'C4'O4'117.6°110.4°
C5'C4'C3'112.8°110.4°
C5'C4'H4'100.3°110.3°
H5'C5'H5''104.3°109.5°
O4'C4'C3'107.6°104.8°
O4'C4'H4'106.3°110.4°
C4'O4'C1'107.3°105.3°
C3'C4'H4'111.9°110.4°
C4'C3'C2'102.8°104.0°
C4'C3'H3'2113.2°110.5°
C4'C3'H3'111.7°110.5°
O4'C1'C2'109.1°104.9°
O4'C1'N9106.3°110.4°
O4'C1'H1'114.0°110.4°
C2'C3'H3'2113.1°110.6°
C2'C3'H3'111.8°110.5°
C3'C2'O2'115.9°110.5°
C3'C2'C1'101.7°104.0°
C3'C2'H2'112.8°110.5°
H3'2C3'H3'104.5°110.5°
O2'C2'C1'115.3°110.8°
O2'C2'H2'98.3°110.4°
C2'O2'HO2'109.5°106.8°
C1'C2'H2'113.4°110.5°
C2'C1'N9115.2°110.4°
C2'C1'H1'104.9°110.4°
N9C1'H1'107.7°110.3°
C1'N9C8132.7°126.3°
C1'N9C4124.4°126.2°
C8N9C4102.9°107.5°
N9C8N7117.3°109.9°
N9C8H8121.4°125.1°
N9C4C5108.5°106.1°
N9C4N3124.1°134.2°
N7C8H8121.4°125.1°
C8N7C5102.0°109.3°
N7C5C6132.1°134.2°
N7C5C4109.3°107.3°
C6C5C4118.5°118.6°
C5C6O6129.9°120.8°
C5C6N1112.9°118.4°
C5C4N3127.4°119.7°
O6C6N1117.2°120.8°
C6N1C2124.2°120.3°
C6N1HN1117.9°119.8°
C2N1HN1117.9°119.8°
N1C2N2119.7°119.0°
N1C2N3122.6°121.9°
N2C2N3117.7°119.0°
C2N2HN21125.3°120.0°
C2N2HN22109.5°120.0°
C2N3C4114.3°121.1°
HN21N2HN22125.2°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1GPGO2GO3G118.2°120.0°
O1GPGO2GO3B121.9°120.0°
O1GPGO3GO3B113.1°120.0°
O1GPGO2GHOG2108.9°60.0°
O1GPGO3GHOG386.5°180.0°
O1GPGO3BPB132.8°45.0°
O2GPGO3GO3B125.1°120.0°
O2GPGO3GHOG335.4°60.0°
O2GPGO3BPB8.0°165.0°
O3GPGO2GHOG2132.8°60.0°
O3GPGO3BPB114.7°75.0°
O3BPGO2GHOG212.9°180.0°
O3BPGO3GHOG3160.4°60.0°
PGO3BPBO1B81.0°40.0°
PGO3BPBO2B38.8°80.0°
PGO3BPBO3A160.7°160.0°
O3BPBO1BO2B119.3°120.0°
O3BPBO1BO3A123.2°119.9°
O3BPBO2BO3A126.6°120.0°
O3BPBO2BHOB2146.6°60.0°
O3BPBO3APA47.1°165.0°
O1BPBO2BO3A118.1°120.0°
O1BPBO2BHOB298.0°180.0°
O1BPBO3APA69.1°45.0°
O2BPBO3APA170.8°75.0°
O3APBO2BHOB220.0°60.0°
PBO3APAO1A148.9°40.0°
PBO3APAO2A18.4°80.0°
PBO3APAO5'100.4°160.0°
O3APAO1AO2A125.4°120.0°
O3APAO1AO5'113.4°120.0°
O3APAO2AO5'118.8°120.0°
O3APAO2AHOA20.2°60.0°
O3APAO5'C5'71.7°175.0°
O1APAO2AO5'119.3°120.0°
O1APAO2AHOA2121.7°180.0°
O1APAO5'C5'177.6°55.0°
O2APAO5'C5'49.0°65.0°
O5'PAO2AHOA2119.0°60.0°
PAO5'C5'C4'178.0°180.0°
PAO5'C5'H5'55.5°60.0°
PAO5'C5'H5''62.0°59.9°
O5'C5'C4'H5'122.5°119.9°
O5'C5'C4'H5''120.0°120.1°
O5'C5'H5'H5''121.8°120.0°
O5'C5'C4'O4'90.2°66.5°
O5'C5'C4'C3'36.0°178.1°
O5'C5'C4'H4'155.1°55.8°
C4'C5'H5'H5''121.8°120.0°
C5'C4'O4'C3'128.6°118.9°
C5'C4'O4'H4'111.4°122.2°
C5'C4'C3'H4'112.2°122.3°
C5'C4'O4'C1'132.9°159.4°
C5'C4'C3'C2'154.9°142.9°
C5'C4'C3'H3'282.7°24.2°
C5'C4'C3'H3'34.9°98.5°
H5'C5'C4'O4'32.3°173.6°
H5'C5'C4'C3'158.5°58.1°
H5'C5'C4'H4'82.4°64.2°
H5''C5'C4'O4'149.8°53.6°
H5''C5'C4'C3'84.0°61.9°
H5''C5'C4'H4'35.1°175.8°
O4'C4'C3'H4'116.4°118.9°
O4'C4'C3'C2'23.5°24.1°
O4'C4'C3'H3'2145.9°94.7°
O4'C4'C3'H3'96.5°142.7°
C4'O4'C1'C2'17.5°40.5°
C4'O4'C1'N9107.2°159.3°
C4'O4'C1'H1'134.3°78.4°
C3'C4'O4'C1'4.2°40.5°
C4'C3'C2'H3'2122.4°118.7°
C4'C3'C2'H3'120.0°118.6°
C4'C3'H3'2H3'121.8°122.6°
C4'C3'C2'O2'93.7°118.8°
C4'C3'C2'C1'32.3°0.1°
C4'C3'C2'H2'154.1°118.7°
H4'C4'O4'C1'115.8°78.3°
H4'C4'C3'C2'92.9°94.8°
H4'C4'C3'H3'229.5°146.4°
H4'C4'C3'H3'147.1°23.8°
O4'C1'C2'C3'31.8°23.9°
O4'C1'C2'O2'94.5°142.6°
O4'C1'C2'N9119.4°118.9°
O4'C1'C2'H1'122.5°118.9°
O4'C1'C2'H2'153.2°94.7°
O4'C1'N9H1'122.5°122.3°
O4'C1'N9C837.2°22.0°
O4'C1'N9C4142.5°157.9°
C2'C3'H3'2H3'121.8°122.7°
C3'C2'O2'C1'118.7°114.7°
C3'C2'O2'H2'120.4°122.5°
C3'C2'C1'H2'121.4°118.6°
C3'C2'O2'HO2'87.7°61.5°
C3'C2'C1'N987.6°142.7°
C3'C2'C1'H1'154.3°95.1°
H3'2C3'C2'O2'28.8°122.5°
H3'2C3'C2'C1'154.7°118.5°
H3'2C3'C2'H2'83.5°0.0°
H3'C3'C2'O2'146.3°0.2°
H3'C3'C2'C1'87.7°118.7°
H3'C3'C2'H2'34.1°122.7°
O2'C2'C1'H2'112.3°122.7°
O2'C2'C1'N9146.1°98.6°
O2'C2'C1'H1'27.9°23.6°
C1'C2'O2'HO2'153.6°176.2°
C2'C1'N9H1'116.6°122.2°
C2'C1'N9C883.7°93.5°
C2'C1'N9C496.6°86.6°
H2'C2'O2'HO2'32.7°61.1°
H2'C2'C1'N933.8°24.2°
H2'C2'C1'H1'84.4°146.3°
C1'N9C8C4179.8°180.0°
C1'N9C8N7179.7°180.0°
C1'N9C8H80.3°0.1°
C1'N9C4C5179.9°180.0°
C1'N9C4N30.5°0.1°
H1'C1'N9C8159.8°144.3°
H1'C1'N9C420.0°35.7°
N9C8N7H8180.0°179.9°
N9C8N7C50.3°0.0°
C8N9C4C50.3°0.0°
C8N9C4N3179.7°180.0°
C4N9C8N70.0°0.0°
C4N9C8H8180.0°180.0°
N9C4C5N70.5°0.0°
N9C4C5C6179.4°180.0°
N9C4C5N3179.4°180.0°
N9C4N3C2179.8°180.0°
C8N7C5C6179.1°180.0°
C8N7C5C40.5°0.0°
H8C8N7C5179.7°180.0°
N7C5C6C4178.6°180.0°
N7C5C6O61.5°0.0°
N7C5C6N1179.6°179.7°
N7C5C4N3179.9°180.0°
C5C6O6N1178.9°179.7°
C5C6N1C20.7°0.5°
C5C6N1HN1179.2°180.0°
C6C5C4N31.2°0.0°
C4C5C6O6180.0°180.0°
C4C5C6N11.0°0.3°
C5C4N3C20.8°0.0°
O6C6N1C2179.8°179.7°
O6C6N1HN10.2°0.3°
C6N1C2HN1180.0°179.4°
C6N1C2N2179.7°179.7°
C6N1C2N30.4°0.6°
N1C2N2N3179.8°179.7°
N1C2N2HN210.0°179.8°
N1C2N2HN22180.0°0.6°
N1C2N3C40.4°0.3°
HN1N1C2N20.3°0.3°
HN1N1C2N3179.6°180.0°
C2N2HN21HN22180.0°179.6°
N2C2N3C4179.8°180.0°
N3C2N2HN21179.8°0.1°
N3C2N2HN220.2°179.7°

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon