GGZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	N3	doub	1.35Å	1.35Å	Aromatic
C2	N1	sing	1.35Å	1.35Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C4	N9	sing	1.37Å	1.33Å
C4	C5	doub	1.39Å	1.44Å	Aromatic
C4	N3	sing	1.34Å	1.36Å	Aromatic
C5	N7	sing	1.37Å	1.38Å
C5	C6	sing	1.39Å	1.40Å	Aromatic
C6	N6	sing	1.41Å	1.35Å
C6	N1	doub	1.35Å	1.35Å	Aromatic
C8	N7	doub	1.32Å	1.27Å
C8	N9	sing	1.37Å	1.24Å
C8	H8	sing	1.08Å	1.08Å
O3P	P1	sing	1.62Å	1.51Å
O3P	HO3P	sing	0.98Å	0.95Å
P1	O3'	sing	1.62Å	1.60Å
P1	O1P	doub	1.50Å	1.50Å
P1	O2'	sing	1.62Å	1.61Å
O2'	C2'	sing	1.44Å	1.41Å
O3'	C3'	sing	1.43Å	1.42Å
C3'	C4'	sing	1.52Å	1.51Å
C3'	C2'	sing	1.52Å	1.52Å
C3'	H3'	sing	1.10Å	1.10Å
C4'	O4'	sing	1.43Å	1.44Å
C4'	C5'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.10Å	1.10Å
C5'	O5'	sing	1.42Å	1.41Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
O5'	P2	sing	1.62Å	1.60Å
P2	O4P	doub	1.50Å	1.50Å
P2	O6P	sing	1.62Å	1.60Å
P2	O5P	sing	1.62Å	1.51Å
O5P	HO5P	sing	0.98Å	0.95Å
O6P	S2	sing	1.63Å	1.62Å
S2	OS1	doub	1.45Å	1.46Å
S2	OS3	doub	1.45Å	1.45Å
S2	OS2	sing	1.63Å	1.49Å
OS2	HOS2	sing	0.99Å	0.95Å
C2'	C1'	sing	1.52Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
C1'	O4'	sing	1.44Å	1.43Å
C1'	N9	sing	1.46Å	1.46Å
C1'	H1'	sing	1.09Å	1.10Å
N6	HN61	sing	1.00Å	1.00Å
N6	HN62	sing	1.00Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N3	C2	N1	123.3°	128.8°
N3	C2	H2	118.3°	115.6°
C2	N3	C4	117.9°	110.5°
N1	C2	H2	118.4°	115.6°
C2	N1	C6	120.5°	117.5°
N9	C4	C5	107.8°	105.2°
N9	C4	N3	130.6°	127.5°
C4	N9	C8	95.0°	107.0°
C4	N9	C1'	134.7°	126.9°
C5	C4	N3	121.6°	127.3°
C4	C5	N7	110.4°	110.8°
C4	C5	C6	116.7°	116.8°
N7	C5	C6	133.0°	132.4°
C5	N7	C8	90.7°	104.9°
C5	C6	N6	122.9°	120.7°
C5	C6	N1	120.0°	119.1°
N6	C6	N1	117.1°	120.2°
C6	N6	HN61	110.0°	119.4°
C6	N6	HN62	125.0°	119.4°
N7	C8	N9	136.0°	112.2°
N7	C8	H8	112.0°	125.6°
N9	C8	H8	112.0°	122.2°
C8	N9	C1'	130.2°	126.1°
P1	O3P	HO3P	109.5°	118.8°
O3P	P1	O3'	110.3°	103.8°
O3P	P1	O1P	122.6°	115.8°
O3P	P1	O2'	108.1°	104.1°
O3'	P1	O1P	107.2°	116.2°
O3'	P1	O2'	95.5°	98.5°
P1	O3'	C3'	113.0°	109.5°
O1P	P1	O2'	109.7°	116.2°
P1	O2'	C2'	114.0°	108.6°
O2'	C2'	C3'	107.0°	105.4°
O2'	C2'	C1'	111.4°	110.3°
O2'	C2'	H2'	109.2°	107.9°
O3'	C3'	C4'	111.6°	111.6°
O3'	C3'	C2'	108.7°	108.3°
O3'	C3'	H3'	107.2°	110.7°
C4'	C3'	C2'	105.0°	102.5°
C4'	C3'	H3'	110.8°	112.2°
C3'	C4'	O4'	109.2°	105.6°
C3'	C4'	C5'	102.9°	113.2°
C3'	C4'	H4'	114.4°	111.5°
C2'	C3'	H3'	113.6°	111.3°
C3'	C2'	C1'	107.3°	103.9°
C3'	C2'	H2'	113.1°	113.9°
O4'	C4'	C5'	111.0°	109.8°
O4'	C4'	H4'	106.7°	108.1°
C4'	O4'	C1'	110.4°	108.4°
C5'	C4'	H4'	112.6°	108.5°
C4'	C5'	O5'	105.9°	108.7°
C4'	C5'	H5'1	110.7°	110.2°
C4'	C5'	H5'2	111.5°	110.2°
O5'	C5'	H5'1	110.7°	109.1°
O5'	C5'	H5'2	111.4°	109.2°
C5'	O5'	P2	118.5°	118.5°
H5'1	C5'	H5'2	106.7°	109.5°
O5'	P2	O4P	110.2°	116.4°
O5'	P2	O6P	98.4°	101.6°
O5'	P2	O5P	109.2°	103.7°
O4P	P2	O6P	109.1°	116.2°
O4P	P2	O5P	119.4°	114.2°
O6P	P2	O5P	108.4°	102.8°
P2	O6P	S2	124.4°	114.6°
P2	O5P	HO5P	109.5°	118.9°
O6P	S2	OS1	105.0°	108.4°
O6P	S2	OS3	106.8°	108.9°
O6P	S2	OS2	103.3°	102.6°
OS1	S2	OS3	113.6°	120.6°
OS1	S2	OS2	112.6°	107.4°
OS3	S2	OS2	114.4°	107.4°
S2	OS2	HOS2	109.5°	115.3°
C1'	C2'	H2'	108.8°	115.1°
C2'	C1'	O4'	108.0°	107.8°
C2'	C1'	N9	106.1°	113.5°
C2'	C1'	H1'	111.5°	112.7°
O4'	C1'	N9	106.1°	108.8°
O4'	C1'	H1'	111.5°	108.5°
N9	C1'	H1'	113.2°	105.4°
HN61	N6	HN62	125.0°	120.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N3	C2	N1	H2	180.0°	180.0°
C2	N3	C4	N9	179.1°	180.0°
C2	N3	C4	C5	0.0°	0.0°
N3	C2	N1	C6	1.7°	0.0°
N1	C2	N3	C4	1.0°	0.0°
C2	N1	C6	C5	1.4°	0.0°
C2	N1	C6	N6	179.1°	180.0°
H2	C2	N3	C4	179.0°	179.9°
H2	C2	N1	C6	178.3°	180.0°
N9	C4	C5	N3	179.3°	179.9°
N9	C4	C5	N7	0.6°	0.0°
N9	C4	C5	C6	179.0°	180.0°
C4	N9	C8	N7	2.7°	0.0°
C4	N9	C8	C1'	176.2°	180.0°
C4	N9	C8	H8	177.3°	180.0°
C4	N9	C1'	C2'	39.3°	56.2°
C4	N9	C1'	O4'	75.4°	63.8°
C4	N9	C1'	H1'	161.9°	180.0°
C4	C5	N7	C6	179.6°	180.0°
C4	C5	C6	N6	179.9°	180.0°
C4	C5	C6	N1	0.5°	0.0°
C4	C5	N7	C8	0.5°	0.0°
C5	C4	N9	C8	1.4°	0.0°
C5	C4	N9	C1'	177.4°	179.9°
N3	C4	C5	N7	179.9°	179.9°
N3	C4	C5	C6	0.2°	0.1°
N3	C4	N9	C8	179.4°	179.9°
N3	C4	N9	C1'	3.5°	0.1°
N7	C5	C6	N6	0.4°	0.0°
N7	C5	C6	N1	179.1°	179.9°
C5	N7	C8	N9	2.2°	0.0°
C5	N7	C8	H8	177.8°	180.0°
C5	C6	N6	N1	179.5°	180.0°
C6	C5	N7	C8	179.9°	180.0°
C5	C6	N6	HN61	180.0°	30.0°
C5	C6	N6	HN62	0.0°	143.7°
C6	N6	HN61	HN62	180.0°	173.6°
N1	C6	N6	HN61	0.5°	150.0°
N1	C6	N6	HN62	179.5°	36.3°
N7	C8	N9	H8	180.0°	180.0°
N7	C8	N9	C1'	178.9°	179.9°
C8	N9	C1'	C2'	146.0°	123.8°
C8	N9	C1'	O4'	99.3°	116.2°
C8	N9	C1'	H1'	23.3°	0.0°
H8	C8	N9	C1'	1.1°	0.0°
O3P	P1	O3'	O1P	135.7°	128.3°
O3P	P1	O3'	O2'	111.7°	106.9°
O3P	P1	O1P	O2'	128.5°	122.6°
O3P	P1	O2'	C2'	100.5°	86.6°
O3P	P1	O3'	C3'	99.3°	105.9°
HO3P	O3P	P1	O3'	154.9°	153.2°
HO3P	O3P	P1	O1P	77.5°	24.6°
HO3P	O3P	P1	O2'	51.7°	104.2°
O3'	P1	O1P	O2'	102.6°	115.2°
O3'	P1	O2'	C2'	13.0°	20.0°
P1	O3'	C3'	C4'	123.6°	94.9°
P1	O3'	C3'	C2'	8.3°	17.2°
P1	O3'	C3'	H3'	114.9°	139.5°
O1P	P1	O2'	C2'	123.5°	144.9°
O1P	P1	O3'	C3'	124.9°	125.8°
O2'	P1	O3'	C3'	12.3°	1.0°
P1	O2'	C2'	C3'	9.5°	31.0°
P1	O2'	C2'	C1'	126.4°	142.6°
P1	O2'	C2'	H2'	113.3°	91.0°
O2'	C2'	C3'	O3'	0.7°	30.5°
O2'	C2'	C3'	C4'	118.8°	87.5°
O2'	C2'	C3'	C1'	119.6°	116.0°
O2'	C2'	C3'	H2'	120.3°	118.0°
O2'	C2'	C3'	H3'	120.0°	152.4°
O2'	C2'	C1'	H2'	120.5°	122.3°
O2'	C2'	C1'	O4'	118.4°	99.5°
O2'	C2'	C1'	N9	128.2°	139.9°
O2'	C2'	C1'	H1'	4.4°	20.2°
O3'	C3'	C4'	C2'	117.6°	115.7°
O3'	C3'	C4'	H3'	119.4°	124.8°
O3'	C3'	C2'	H3'	119.3°	121.9°
O3'	C3'	C4'	O4'	120.6°	150.5°
O3'	C3'	C4'	C5'	121.4°	89.4°
O3'	C3'	C4'	H4'	1.1°	33.3°
O3'	C3'	C2'	C1'	120.3°	146.5°
O3'	C3'	C2'	H2'	119.6°	87.5°
C4'	C3'	C2'	H3'	121.2°	120.0°
C3'	C4'	O4'	C5'	112.8°	122.3°
C3'	C4'	O4'	H4'	124.1°	119.5°
C3'	C4'	C5'	H4'	123.7°	124.4°
C3'	C4'	C5'	O5'	177.2°	179.5°
C3'	C4'	C5'	H5'1	57.2°	60.0°
C3'	C4'	C5'	H5'2	61.5°	60.9°
C4'	C3'	C2'	C1'	0.8°	28.5°
C4'	C3'	C2'	H2'	120.9°	154.5°
C3'	C4'	O4'	C1'	4.3°	27.7°
C2'	C3'	C4'	O4'	3.0°	34.8°
C2'	C3'	C4'	C5'	121.0°	154.9°
C2'	C3'	C4'	H4'	116.5°	82.4°
C3'	C2'	C1'	H2'	122.8°	125.2°
C3'	C2'	C1'	O4'	1.7°	13.0°
C3'	C2'	C1'	N9	115.1°	107.6°
C3'	C2'	C1'	H1'	121.2°	132.7°
H3'	C3'	C4'	O4'	120.0°	84.6°
H3'	C3'	C4'	C5'	2.0°	35.5°
H3'	C3'	C4'	H4'	120.5°	158.2°
H3'	C3'	C2'	C1'	120.4°	91.6°
H3'	C3'	C2'	H2'	0.3°	34.4°
O4'	C4'	C5'	H4'	119.6°	117.9°
O4'	C4'	C5'	O5'	66.1°	61.8°
O4'	C4'	C5'	H5'1	173.9°	57.7°
O4'	C4'	C5'	H5'2	55.2°	178.6°
C4'	O4'	C1'	C2'	3.7°	9.0°
C4'	O4'	C1'	N9	117.1°	132.5°
C4'	O4'	C1'	H1'	119.2°	113.3°
C4'	C5'	O5'	H5'1	120.0°	120.1°
C4'	C5'	O5'	H5'2	121.4°	120.2°
C4'	C5'	H5'1	H5'2	121.4°	121.3°
C4'	C5'	O5'	P2	146.0°	120.0°
C5'	C4'	O4'	C1'	117.1°	150.0°
H4'	C4'	C5'	O5'	53.5°	56.1°
H4'	C4'	C5'	H5'1	66.5°	175.6°
H4'	C4'	C5'	H5'2	174.9°	63.5°
H4'	C4'	O4'	C1'	119.8°	91.8°
O5'	C5'	H5'1	H5'2	121.5°	119.5°
C5'	O5'	P2	O4P	171.0°	180.0°
C5'	O5'	P2	O6P	74.9°	52.7°
C5'	O5'	P2	O5P	38.0°	53.7°
H5'1	C5'	O5'	P2	26.0°	0.1°
H5'2	C5'	O5'	P2	92.6°	119.8°
O5'	P2	O4P	O6P	107.0°	119.7°
O5'	P2	O4P	O5P	127.6°	120.9°
O5'	P2	O6P	O5P	113.6°	107.2°
O5'	P2	O5P	HO5P	30.4°	174.8°
O5'	P2	O6P	S2	163.3°	172.5°
O4P	P2	O6P	O5P	131.5°	125.4°
O4P	P2	O5P	HO5P	158.4°	47.1°
O4P	P2	O6P	S2	48.4°	60.1°
O6P	P2	O5P	HO5P	75.9°	79.6°
P2	O6P	S2	OS1	81.2°	73.0°
P2	O6P	S2	OS3	39.7°	60.0°
P2	O6P	S2	OS2	160.7°	173.6°
O5P	P2	O6P	S2	83.1°	65.4°
O6P	S2	OS1	OS3	116.4°	126.4°
O6P	S2	OS1	OS2	111.6°	110.2°
O6P	S2	OS3	OS2	113.6°	110.4°
O6P	S2	OS2	HOS2	140.2°	46.8°
OS1	S2	OS3	OS2	131.1°	123.4°
OS1	S2	OS2	HOS2	27.5°	67.3°
OS3	S2	OS2	HOS2	104.1°	161.5°
C2'	C1'	O4'	N9	113.4°	123.5°
C2'	C1'	O4'	H1'	122.9°	122.3°
C2'	C1'	N9	H1'	122.6°	123.8°
H2'	C2'	C1'	O4'	121.1°	138.2°
H2'	C2'	C1'	N9	7.7°	17.6°
H2'	C2'	C1'	H1'	116.0°	102.1°
O4'	C1'	N9	H1'	122.6°	116.2°

Definition date:	2007-04-05
Last modified:	2011-06-04
Release status:	REL
Processing site:	PDBJ