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GGM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.36Å1.41Å
N1C6sing1.35Å1.41Å
C2N2sing1.37Å1.35Å
C2N3doub1.31Å1.34Å
N3C4sing1.34Å1.36Å
C4C5doub1.40Å1.38ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6sing1.41Å1.39Å
C5N7sing1.36Å1.34ÅAromatic
C6O6doub1.22Å1.22Å
N7C8doub1.30Å1.33ÅAromatic
C8N9sing1.37Å1.34ÅAromatic
N9C1'sing1.46Å1.44Å
CAOAdoub1.22Å1.63Å
CAO3'sing1.35Å1.39Å
CACA1sing1.47Å1.58Å
PAO1Adoub1.48Å1.47Å
PAO2Asing1.61Å1.48Å
PAO3Asing1.61Å1.68Å
PAO5'sing1.61Å1.57Å
PBO1Bsing1.61Å1.51Å
PBO2Bdoub1.48Å1.49Å
PBO3Asing1.61Å1.61Å
PBN3Bsing1.68Å1.68Å
PGO1Gdoub1.48Å1.49Å
PGO2Gsing1.61Å1.63Å
PGN3Bsing1.68Å1.68Å
PGO3Gsing1.61Å1.59Å
C1'C2'sing1.55Å1.47Å
C1'O4'sing1.44Å1.48Å
C2'O2'sing1.43Å1.46Å
C2'C3'sing1.55Å1.45Å
C3'O3'sing1.45Å1.46Å
C3'C4'sing1.54Å1.57Å
C4'O4'sing1.44Å1.49Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.41Å
CA1CA2doub1.40Å1.43ÅAromatic
CA1CA6sing1.40Å1.41ÅAromatic
NA1CA2sing1.39Å1.35Å
NA1CAMsing1.46Å1.49Å
CA2CA3sing1.39Å1.42ÅAromatic
CA3CA4doub1.38Å1.41ÅAromatic
CA4CA5sing1.39Å1.41ÅAromatic
CA5CA6doub1.38Å1.41ÅAromatic
N1HN1sing0.97Å1.00Å
N2HN2sing0.97Å1.00Å
N2HN2Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
O1BHO1Bsing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2AHO2Asing0.97Å0.95Å
O2GHO2Gsing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
N3BHN3Bsing1.01Å1.00Å
O3GHO3Gsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
NA1HNA1sing0.97Å1.00Å
CA3HA3sing1.08Å1.08Å
CA4HA4sing1.08Å1.08Å
CA5HA5sing1.08Å1.08Å
CA6HA6sing1.08Å1.08Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
CAMHAMBsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6120.1°120.4°
N1C2N2120.9°119.1°
N1C2N3118.5°121.9°
C2N1HN1119.9°119.8°
N1C6C5119.5°118.3°
N1C6O6120.4°120.9°
C6N1HN1119.9°119.8°
N2C2N3120.6°119.1°
C2N2HN2120.0°120.0°
C2N2HN2A120.0°120.0°
C2N3C4121.5°121.1°
N3C4C5122.6°119.7°
N3C4N9131.4°134.2°
C5C4N9106.0°106.2°
C4C5C6117.7°118.7°
C4C5N7107.6°107.2°
C4N9C8110.0°107.5°
C4N9C1'118.6°126.3°
C6C5N7134.7°134.1°
C5C6O6120.1°120.8°
C5N7C8108.5°109.4°
N7C8N9107.9°109.8°
N7C8H8126.1°125.1°
C8N9C1'131.4°126.2°
N9C8H8126.0°125.1°
N9C1'C2'123.8°110.6°
N9C1'O4'108.9°110.7°
N9C1'H1'96.9°110.5°
OACAO3'108.5°120.0°
OACACA1114.6°120.0°
O3'CACA1135.4°120.0°
CAO3'C3'128.4°117.0°
CACA1CA2121.6°120.2°
CACA1CA6119.5°120.2°
O1APAO2A118.1°109.5°
O1APAO3A112.5°109.5°
O1APAO5'104.8°109.5°
O2APAO3A107.7°109.5°
O2APAO5'112.7°109.5°
PAO2AHO2A109.5°114.0°
O3APAO5'99.5°109.5°
PAO3APB125.9°134.0°
PAO5'C5'123.4°123.0°
O1BPBO2B117.1°109.5°
O1BPBO3A104.9°109.5°
O1BPBN3B110.8°109.4°
PBO1BHO1B109.5°114.1°
O2BPBO3A110.9°109.5°
O2BPBN3B109.2°109.5°
O3APBN3B102.8°109.5°
PBN3BPG121.3°111.0°
PBN3BHN3B105.7°111.0°
O1GPGO2G113.3°109.5°
O1GPGN3B105.2°109.5°
O1GPGO3G109.4°109.5°
O2GPGN3B110.7°109.4°
O2GPGO3G108.7°109.5°
PGO2GHO2G109.5°113.9°
N3BPGO3G109.6°109.5°
PGN3BHN3B105.7°111.0°
PGO3GHO3G109.5°114.0°
C2'C1'O4'96.7°103.5°
C1'C2'O2'110.7°110.9°
C1'C2'C3'123.3°102.1°
C2'C1'H1'109.0°110.6°
C1'C2'H2'98.1°110.9°
C1'O4'C4'111.2°107.0°
O4'C1'H1'123.9°110.7°
O2'C2'C3'110.8°110.9°
O2'C2'H2'114.7°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'104.5°110.5°
C2'C3'C4'93.9°104.2°
C3'C2'H2'97.9°110.9°
C2'C3'H3'121.3°110.5°
O3'C3'C4'108.7°110.4°
O3'C3'H3'109.1°110.4°
C3'C4'O4'110.0°107.3°
C3'C4'C5'115.2°109.9°
C4'C3'H3'117.7°110.6°
C3'C4'H4'103.8°109.9°
O4'C4'C5'104.9°109.8°
O4'C4'H4'114.3°109.9°
C4'C5'O5'109.8°109.5°
C5'C4'H4'109.0°110.0°
C4'C5'H5'109.4°109.5°
C4'C5'H5'A109.4°109.5°
O5'C5'H5'109.4°109.4°
O5'C5'H5'A109.4°109.5°
CA2CA1CA6118.9°119.6°
CA1CA2NA1121.2°120.2°
CA1CA2CA3119.5°119.6°
CA1CA6CA5121.1°119.9°
CA1CA6HA6119.4°120.0°
CA2NA1CAM122.5°120.1°
NA1CA2CA3119.3°120.1°
CA2NA1HNA1105.4°120.0°
CAMNA1HNA1105.4°119.9°
NA1CAMHAM109.5°109.5°
NA1CAMHAMA109.5°109.5°
NA1CAMHAMB109.5°109.5°
CA2CA3CA4120.8°120.0°
CA2CA3HA3119.6°120.0°
CA3CA4CA5119.4°120.5°
CA4CA3HA3119.6°120.0°
CA3CA4HA4120.3°119.8°
CA4CA5CA6120.2°120.3°
CA5CA4HA4120.3°119.7°
CA4CA5HA5119.9°119.8°
CA6CA5HA5119.9°119.9°
CA5CA6HA6119.5°120.1°
HN2N2HN2A120.0°120.0°
H5'C5'H5'A109.6°109.4°
HAMCAMHAMA109.5°109.4°
HAMCAMHAMB109.4°109.5°
HAMACAMHAMB109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6HN1180.0°179.7°
N1C2N2N3179.4°180.0°
N1C2N3C40.4°0.0°
C2N1C6C50.1°0.0°
C2N1C6O6179.7°180.0°
N1C2N2HN2179.4°0.0°
N1C2N2HN2A0.6°180.0°
C6N1C2N2179.5°180.0°
C6N1C2N30.1°0.0°
N1C6C5C40.6°0.0°
N1C6C5O6179.6°180.0°
N1C6C5N7179.8°180.0°
N2C2N3C4179.0°180.0°
N2C2N1HN10.5°0.3°
C2N2HN2HN2A180.0°179.9°
C2N3C4C51.0°0.0°
C2N3C4N9179.1°180.0°
N3C2N1HN1179.9°179.7°
N3C2N2HN20.0°180.0°
N3C2N2HN2A180.0°0.0°
N3C4C5N9178.5°180.0°
N3C4C5C61.1°0.0°
N3C4C5N7179.2°180.0°
N3C4N9C8179.1°180.0°
N3C4N9C1'2.4°0.0°
C4C5C6N7179.6°180.0°
C4C5C6O6179.7°180.0°
C4C5N7C80.3°0.0°
C5C4N9C80.8°0.0°
C5C4N9C1'179.3°180.0°
N9C4C5C6179.6°180.0°
N9C4C5N70.7°0.0°
C4N9C8N70.6°0.0°
C4N9C8C1'178.2°180.0°
C4N9C1'C2'137.0°85.0°
C4N9C1'O4'110.8°160.9°
C4N9C8H8179.4°179.9°
C4N9C1'H1'18.6°37.9°
C6C5N7C8180.0°180.0°
C5C6N1HN1179.9°179.7°
N7C5C6O60.1°0.0°
C5N7C8N90.2°0.0°
C5N7C8H8179.9°179.9°
O6C6N1HN10.3°0.3°
N7C8N9H8180.0°179.9°
N7C8N9C1'178.8°180.0°
C8N9C1'C2'44.9°95.0°
C8N9C1'O4'67.3°19.1°
C8N9C1'H1'163.3°142.1°
N9C1'C2'O4'118.2°118.5°
N9C1'C2'H1'112.5°122.8°
N9C1'O4'H1'112.5°122.9°
N9C1'C2'O2'84.2°86.3°
N9C1'C2'C3'141.2°155.5°
N9C1'O4'C4'139.1°158.6°
C1'N9C8H81.2°0.1°
N9C1'C2'H2'36.1°37.3°
OACAO3'CA1164.7°180.0°
OACAO3'C3'138.4°0.0°
OACACA1CA259.5°5.5°
OACACA1CA6120.3°174.2°
CAO3'C3'C2'27.1°91.4°
CAO3'C3'C4'72.2°153.8°
O3'CACA1CA2136.5°174.5°
O3'CACA1CA643.7°5.9°
CAO3'C3'H3'158.2°31.1°
CA1CAO3'C3'56.9°179.9°
CACA1CA2CA6179.8°179.6°
CACA1CA2NA10.3°0.1°
CACA1CA2CA3179.9°180.0°
CACA1CA6CA5179.6°179.8°
CACA1CA6HA60.4°0.1°
O1APAO2AO3A128.8°120.0°
O1APAO2AO5'122.4°120.0°
O1APAO3AO5'110.4°120.0°
O1APAO3APB71.9°40.0°
O1APAO5'C5'169.0°55.0°
O1APAO2AHO2A0.0°180.0°
O2APAO3AO5'117.6°120.0°
O2APAO3APB60.1°80.0°
O2APAO5'C5'61.3°65.0°
PAO3APBO1B146.4°60.0°
PAO3APBO2B19.0°60.0°
PAO3APBN3B97.6°180.0°
O3APAO5'C5'52.6°175.0°
O3APAO2AHO2A128.8°60.0°
O5'PAO3APB177.7°160.0°
PAO5'C5'C4'153.3°180.0°
O5'PAO2AHO2A122.4°60.0°
PAO5'C5'H5'86.7°60.0°
PAO5'C5'H5'A33.3°60.0°
O1BPBO2BO3A120.4°120.1°
O1BPBO2BN3B127.0°119.9°
O1BPBO3AN3B116.0°119.9°
O1BPBN3BPG82.3°60.0°
O1BPBN3BHN3B37.7°64.0°
O2BPBO3AN3B116.6°120.0°
O2BPBN3BPG48.3°60.0°
O2BPBO1BHO1B0.0°180.0°
O2BPBN3BHN3B168.2°176.0°
O3APBN3BPG166.1°180.0°
O3APBO1BHO1B123.5°60.0°
O3APBN3BHN3B74.0°56.0°
PBN3BPGO1G64.1°60.0°
PBN3BPGO2G58.6°180.0°
PBN3BPGHN3B120.0°124.0°
PBN3BPGO3G178.4°60.0°
N3BPBO1BHO1B126.2°60.0°
O1GPGO2GN3B117.9°120.0°
O1GPGO2GO3G121.7°120.0°
O1GPGN3BO3G117.5°120.0°
O1GPGO2GHO2G0.0°60.0°
O1GPGN3BHN3B175.9°64.0°
O1GPGO3GHO3G0.0°180.0°
O2GPGN3BO3G119.8°120.0°
O2GPGN3BHN3B61.4°56.0°
O2GPGO3GHO3G124.1°60.0°
N3BPGO2GHO2G117.9°180.0°
N3BPGO3GHO3G114.8°60.0°
O3GPGO2GHO2G121.7°60.0°
O3GPGN3BHN3B58.5°176.0°
C2'C1'O4'H1'118.3°118.5°
C1'C2'O2'C3'140.5°112.7°
C1'C2'O2'H2'109.8°123.6°
C1'C2'C3'H2'105.1°118.2°
C1'C2'C3'O3'86.8°97.8°
C1'C2'C3'C4'23.6°20.9°
C2'C1'O4'C4'9.9°40.1°
C1'C2'O2'HO2'180.0°61.4°
C1'C2'C3'H3'149.7°139.7°
O4'C1'C2'O2'157.6°155.2°
O4'C1'C2'C3'23.0°37.0°
C1'O4'C4'C3'2.3°26.5°
C1'O4'C4'C5'122.2°145.9°
O4'C1'C2'H2'82.0°81.2°
C1'O4'C4'H4'118.5°92.9°
O2'C2'C3'H2'120.3°123.6°
O2'C2'C3'O3'47.8°20.4°
O2'C2'C3'C4'158.2°139.0°
O2'C2'C1'H1'28.3°36.6°
O2'C2'C3'H3'75.8°102.1°
C2'C3'O3'C4'99.3°114.8°
C2'C3'O3'H3'131.1°122.6°
C2'C3'C4'H3'128.7°118.7°
C2'C3'C4'O4'13.3°2.1°
C2'C3'C4'C5'105.0°121.4°
C3'C2'C1'H1'106.3°81.6°
C3'C2'O2'HO2'39.6°174.1°
C2'C3'C4'H4'135.9°117.4°
O3'C3'C4'H3'124.6°122.6°
O3'C3'C4'O4'93.4°120.8°
O3'C3'C4'C5'148.3°119.9°
O3'C3'C2'H2'168.1°144.0°
O3'C3'C4'H4'29.3°1.3°
C3'C4'O4'C5'124.4°119.4°
C3'C4'O4'H4'116.3°119.5°
C3'C4'C5'H4'116.2°121.1°
C3'C4'C5'O5'40.4°175.0°
C4'C3'C2'H2'81.5°97.3°
C3'C4'C5'H5'160.5°55.0°
C3'C4'C5'H5'A79.6°65.0°
O4'C4'C5'H4'122.8°121.1°
O4'C4'C5'O5'80.6°67.2°
C4'O4'C1'H1'108.4°78.5°
O4'C4'C3'H3'141.9°116.7°
O4'C4'C5'H5'39.4°172.8°
O4'C4'C5'H5'A159.4°52.8°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'23.7°2.7°
C4'C5'H5'H5'A119.9°120.0°
O5'C5'C4'H4'156.6°53.9°
O5'C5'H5'H5'A119.9°120.0°
CA1CA2NA1CA3179.6°179.9°
CA1CA2NA1CAM136.8°174.3°
CA1CA2CA3CA40.1°0.0°
CA2CA1CA6CA50.6°0.6°
CA1CA2NA1HNA1103.2°5.8°
CA1CA2CA3HA3179.9°180.0°
CA2CA1CA6HA6179.4°179.8°
CA6CA1CA2NA1179.9°179.7°
CA6CA1CA2CA30.3°0.3°
CA1CA6CA5CA40.5°0.6°
CA1CA6CA5HA6180.0°179.6°
CA1CA6CA5HA5179.5°179.7°
CA2NA1CAMHNA1120.0°179.9°
NA1CA2CA3CA4179.5°180.0°
NA1CA2CA3HA30.5°0.0°
CA2NA1CAMHAM180.0°59.9°
CA2NA1CAMHAMA60.0°60.0°
CA2NA1CAMHAMB60.0°180.0°
CAMNA1CA2CA343.5°5.6°
NA1CAMHAMHAMA120.0°120.0°
NA1CAMHAMHAMB120.0°120.1°
NA1CAMHAMAHAMB120.0°120.1°
CA2CA3CA4HA3180.0°180.0°
CA2CA3CA4CA50.2°0.0°
CA3CA2NA1HNA176.5°174.3°
CA2CA3CA4HA4179.7°180.0°
CA3CA4CA5HA4180.0°180.0°
CA3CA4CA5CA60.1°0.2°
CA3CA4CA5HA5179.9°180.0°
CA4CA5CA6HA5180.0°179.8°
CA5CA4CA3HA3179.8°180.0°
CA4CA5CA6HA6179.5°179.8°
CA6CA5CA4HA4180.0°179.8°
H1'C1'C2'H2'148.6°160.2°
H2'C2'O2'HO2'70.1°62.2°
H2'C2'C3'H3'44.5°21.5°
H3'C3'C4'H4'95.4°123.9°
H4'C4'C5'H5'83.4°66.1°
H4'C4'C5'H5'A36.6°173.9°
HNA1NA1CAMHAM60.0°120.0°
HNA1NA1CAMHAMA179.9°120.1°
HNA1NA1CAMHAMB60.0°0.1°
HA3CA3CA4HA40.3°0.0°
HA4CA4CA5HA50.1°0.0°
HA5CA5CA6HA60.5°0.0°
HAMCAMHAMAHAMB120.0°120.0°

222926

PDB entries from 2024-07-24

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