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GGF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1PP1doub1.48Å1.51Å
O2PP1sing1.61Å1.51Å
P1O5'sing1.61Å1.60Å
P1O3Asing1.61Å1.61Å
O4'C1'sing1.43Å1.43Å
O4'C4'sing1.43Å1.43Å
O5'C5'sing1.43Å1.42Å
C8N7doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N7C5sing1.36Å1.34ÅAromatic
C5'C4'sing1.53Å1.52Å
N9C1'sing1.47Å1.48Å
N9C4sing1.37Å1.33ÅAromatic
C5C6sing1.41Å1.48Å
C5C4doub1.40Å1.47ÅAromatic
O6C6doub1.22Å1.25Å
C1'C2'sing1.54Å1.52Å
C6N1sing1.35Å1.34Å
C4N3sing1.34Å1.35Å
C4'C3'sing1.54Å1.52Å
O3AC3Asing1.43Å1.42Å
N1C2sing1.36Å1.35Å
N3C2doub1.31Å1.36Å
C2N2sing1.37Å1.35Å
F1C2Asing1.40Å1.36Å
C2AC3Asing1.54Å1.52Å
C2AC1Asing1.54Å1.52Å
C3AC4Asing1.54Å1.52Å
C3'C2'sing1.54Å1.52Å
C3'O3'sing1.43Å1.41Å
C2'F2sing1.40Å1.36Å
N21C21sing1.37Å1.36Å
C21N31doub1.31Å1.36Å
C21N11sing1.36Å1.35Å
N31C41sing1.34Å1.35Å
N11C61sing1.35Å1.34Å
O3'P11sing1.61Å1.61Å
C4AC5Asing1.53Å1.52Å
C4AO4Asing1.43Å1.43Å
C41C51doub1.40Å1.47ÅAromatic
C41N91sing1.37Å1.33ÅAromatic
C61O61doub1.22Å1.25Å
C61C51sing1.41Å1.48Å
C1AN91sing1.47Å1.48Å
C1AO4Asing1.43Å1.43Å
C51N71sing1.36Å1.34ÅAromatic
N91C81sing1.36Å1.35ÅAromatic
C81N71doub1.30Å1.36ÅAromatic
C5AO5Asing1.43Å1.42Å
O5AP11sing1.61Å1.60Å
P11O21doub1.48Å1.51Å
P11O11sing1.61Å1.51Å
C1'H1'sing1.09Å1.10Å
C1AH1Asing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C2AH2Asing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C3AH3Asing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C4AH4Asing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
C81H81sing1.08Å1.08Å
N1HN1sing0.97Å1.00Å
N11HN11sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
N2HN21sing0.97Å1.00Å
N21H212sing0.97Å1.00Å
N21H211sing0.97Å1.00Å
O11H1sing0.97Å0.95Å
O2PH2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PP1O2P111.4°109.5°
O1PP1O5'109.4°109.5°
O1PP1O3A109.2°109.5°
O2PP1O5'108.2°109.5°
O2PP1O3A109.6°109.5°
P1O2PH2109.5°114.0°
O5'P1O3A108.9°109.3°
P1O5'C5'119.1°123.1°
P1O3AC3A117.5°122.8°
C1'O4'C4'109.5°109.9°
O4'C1'N9112.4°109.4°
O4'C1'C2'106.3°108.8°
O4'C1'H1'111.0°109.6°
O4'C4'C5'112.2°110.0°
O4'C4'C3'104.4°107.4°
O4'C4'H4'109.8°109.7°
O5'C5'C4'109.6°109.4°
O5'C5'H5'1109.5°109.4°
O5'C5'H5'2109.5°109.5°
N7C8N9110.6°109.8°
C8N7C5107.8°109.3°
N7C8H8124.7°125.1°
C8N9C1'126.2°126.3°
C8N9C4108.8°107.5°
N9C8H8124.7°125.1°
N7C5C6136.3°134.1°
N7C5C4106.5°107.3°
C5'C4'C3'113.0°109.8°
C5'C4'H4'108.7°109.9°
C4'C5'H5'1109.5°109.5°
C4'C5'H5'2109.5°109.5°
C1'N9C4124.9°126.2°
N9C1'C2'106.8°109.7°
N9C1'H1'110.4°109.6°
N9C4C5106.3°106.1°
N9C4N3135.0°134.2°
C6C5C4117.2°118.6°
C5C6O6121.1°120.9°
C5C6N1118.1°118.3°
C5C4N3118.8°119.7°
O6C6N1120.8°120.8°
C1'C2'C3'102.2°104.8°
C1'C2'F2110.9°110.4°
C2'C1'H1'109.8°109.7°
C1'C2'H2'110.1°110.4°
C6N1C2122.2°120.3°
C6N1HN1118.9°119.9°
C4N3C2120.8°121.1°
C4'C3'C2'100.9°104.7°
C4'C3'O3'114.8°110.5°
C4'C3'H3'109.0°110.4°
C3'C4'H4'108.6°109.8°
O3AC3AC2A111.9°110.5°
O3AC3AC4A115.2°110.3°
O3AC3AH3A110.3°110.4°
N1C2N3122.9°121.9°
N1C2N2118.6°119.0°
C2N1HN1118.9°119.8°
N3C2N2118.5°119.1°
C2N2HN22120.0°120.0°
C2N2HN21120.0°119.9°
F1C2AC3A110.9°110.3°
F1C2AC1A110.9°110.4°
F1C2AH2A112.3°110.4°
C3AC2AC1A102.4°105.0°
C2AC3AC4A101.2°104.8°
C3AC2AH2A110.0°110.3°
C2AC3AH3A109.0°110.3°
C2AC1AN91106.6°109.7°
C2AC1AO4A106.1°108.4°
C2AC1AH1A110.0°109.6°
C1AC2AH2A109.9°110.4°
C3AC4AC5A113.1°110.1°
C3AC4AO4A104.2°107.5°
C4AC3AH3A108.8°110.4°
C3AC4AH4A108.8°109.7°
C2'C3'O3'112.2°110.5°
C3'C2'F2110.4°110.4°
C3'C2'H2'110.2°110.4°
C2'C3'H3'109.1°110.1°
C3'O3'P11117.4°122.9°
O3'C3'H3'110.5°110.4°
F2C2'H2'112.6°110.4°
N21C21N31118.5°119.1°
N21C21N11118.6°119.1°
C21N21H212120.0°120.0°
C21N21H211120.0°120.1°
N31C21N11122.9°121.8°
C21N31C41120.9°121.2°
C21N11C61122.2°120.4°
C21N11HN11118.9°119.8°
N31C41C51118.8°119.7°
N31C41N91135.0°134.2°
N11C61O61120.8°120.9°
N11C61C51118.1°118.3°
C61N11HN11118.9°119.8°
O3'P11O5A109.0°109.5°
O3'P11O21109.6°109.5°
O3'P11O11109.4°109.4°
C5AC4AO4A111.9°110.0°
C4AC5AO5A109.6°109.9°
C5AC4AH4A108.8°109.9°
C4AC5AH5A1109.4°109.4°
C4AC5AH5A2109.4°109.4°
C4AO4AC1A109.8°109.8°
O4AC4AH4A110.0°109.6°
C51C41N91106.2°106.1°
C41C51C61117.2°118.6°
C41C51N71106.6°107.3°
C41N91C1A124.9°126.3°
C41N91C81108.9°107.5°
O61C61C51121.0°120.8°
C61C51N71136.3°134.1°
N91C1AO4A111.9°109.7°
C1AN91C81126.1°126.2°
N91C1AH1A110.7°109.7°
O4AC1AH1A111.3°109.8°
C51N71C81107.8°109.3°
N91C81N71110.5°109.8°
N91C81H81124.7°125.1°
N71C81H81124.8°125.1°
C5AO5AP11119.2°122.9°
O5AC5AH5A1109.5°109.4°
O5AC5AH5A2109.5°109.4°
O5AP11O21108.0°109.5°
O5AP11O11109.5°109.4°
O21P11O11111.2°109.5°
P11O11H1109.5°114.0°
H5'1C5'H5'2109.4°109.5°
H5A1C5AH5A2109.5°109.4°
HN22N2HN21120.0°120.0°
H212N21H211120.0°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PP1O2PO5'120.3°120.1°
O1PP1O2PO3A121.0°120.1°
O1PP1O5'O3A119.3°120.0°
O1PP1O5'C5'54.9°95.3°
O1PP1O3AC3A170.0°108.0°
O1PP1O2PH20.0°60.0°
O2PP1O5'O3A119.1°120.0°
O2PP1O5'C5'176.4°24.7°
O2PP1O3AC3A47.7°131.9°
P1O5'C5'C4'171.2°135.5°
O5'P1O3AC3A70.5°11.9°
P1O5'C5'H5'151.2°104.6°
P1O5'C5'H5'268.8°15.5°
O5'P1O2PH2120.3°60.0°
O3AP1O5'C5'64.4°144.7°
P1O3AC3AC2A92.9°154.9°
P1O3AC3AC4A152.3°89.7°
P1O3AC3AH3A28.6°32.6°
O3AP1O2PH2121.0°179.9°
O4'C1'N9C825.2°24.2°
C1'O4'C4'C5'145.4°141.3°
O4'C1'N9C2'116.2°119.3°
O4'C1'N9H1'124.5°120.3°
O4'C1'N9C4156.9°155.2°
O4'C1'C2'H1'120.1°119.9°
C1'O4'C4'C3'22.6°21.7°
O4'C1'C2'C3'26.6°1.9°
O4'C1'C2'F291.0°120.8°
O4'C1'C2'H2'143.7°116.9°
C1'O4'C4'H4'93.7°97.6°
O4'C4'C5'O5'54.9°167.4°
O4'C4'C5'C3'117.8°118.1°
O4'C4'C5'H4'121.6°121.0°
C4'O4'C1'N9113.9°134.7°
C4'O4'C1'C2'2.6°14.9°
O4'C4'C3'H4'117.1°119.3°
O4'C4'C3'C2'38.3°19.6°
O4'C4'C3'O3'159.0°138.6°
C4'O4'C1'H1'121.9°105.0°
O4'C4'C3'H3'76.4°98.9°
O4'C4'C5'H5'1174.9°72.7°
O4'C4'C5'H5'265.2°47.4°
O5'C5'C4'H5'1120.0°119.9°
O5'C5'C4'H5'2120.0°120.0°
O5'C5'C4'C3'62.9°74.5°
O5'C5'C4'H4'176.5°46.4°
O5'C5'H5'1H5'2120.0°120.0°
N7C8N9H8180.0°179.5°
N7C8N9C1'179.1°180.0°
N7C8N9C40.9°0.5°
C8N7C5C6179.9°180.0°
C8N7C5C40.0°0.2°
N9C8N7C50.6°0.4°
C8N9C1'C4177.9°179.4°
C8N9C4C50.8°0.3°
C8N9C1'C2'90.9°95.0°
C8N9C4N3179.8°179.7°
C8N9C1'H1'149.7°144.5°
N7C5C4N90.5°0.1°
N7C5C6C4180.0°179.8°
N7C5C6O60.1°0.3°
N7C5C6N1180.0°180.0°
N7C5C4N3180.0°179.9°
C5N7C8H8179.5°180.0°
C5'C4'C3'H4'120.7°121.0°
C5'C4'C3'C2'160.5°139.3°
C5'C4'C3'O3'78.7°101.7°
C5'C4'C3'H3'45.8°20.7°
C4'C5'H5'1H5'2119.9°120.1°
C1'N9C4C5179.0°179.9°
N9C1'C2'H1'119.7°120.4°
C1'N9C4N31.6°0.2°
N9C1'C2'C3'93.5°121.6°
N9C1'C2'F2148.9°119.5°
N9C1'C2'H2'23.5°2.7°
C1'N9C8H81.0°0.5°
N9C4C5C6179.5°179.7°
N9C4C5N3179.5°180.0°
C4N9C1'C2'86.9°85.6°
N9C4N3C2179.3°180.0°
C4N9C1'H1'32.4°34.9°
C4N9C8H8179.1°180.0°
C5C6O6N1180.0°179.7°
C6C5C4N30.0°0.2°
C5C6N1C20.1°0.1°
C5C6N1HN1180.0°180.0°
C4C5C6O6179.9°180.0°
C4C5C6N10.1°0.2°
C5C4N3C20.0°0.0°
O6C6N1C2179.9°179.7°
O6C6N1HN10.1°0.3°
C1'C2'C3'C4'38.9°10.4°
C1'C2'C3'F2118.0°118.8°
C1'C2'C3'H2'117.0°118.8°
C1'C2'C3'O3'161.5°129.4°
C1'C2'F2H2'123.9°122.3°
C1'C2'C3'H3'75.8°108.3°
C6N1C2HN1180.0°180.0°
C6N1C2N30.0°0.3°
C6N1C2N2180.0°180.0°
C4N3C2N10.0°0.3°
C4N3C2N2179.9°179.9°
C4'C3'C2'O3'122.6°119.0°
C4'C3'C2'H3'114.6°118.7°
C4'C3'O3'H3'123.7°122.4°
C4'C3'C2'F279.1°108.4°
C4'C3'O3'P11151.8°117.4°
C4'C3'C2'H2'155.9°129.3°
C3'C4'C5'H5'157.2°45.4°
C3'C4'C5'H5'2177.1°165.5°
O3AC3AC2AF143.1°6.5°
O3AC3AC2AC4A123.2°118.8°
O3AC3AC2AH3A122.3°122.4°
O3AC3AC2AC1A161.4°125.4°
O3AC3AC4AH3A124.5°122.3°
O3AC3AC4AC5A79.3°103.6°
O3AC3AC4AO4A159.0°136.6°
O3AC3AC2AH2A81.8°115.7°
O3AC3AC4AH4A41.8°17.4°
N1C2N3N2179.9°179.7°
N1C2N2HN22180.0°0.0°
N1C2N2HN210.1°180.0°
N3C2N1HN1180.0°179.7°
N3C2N2HN220.0°179.7°
N3C2N2HN21180.0°0.3°
N2C2N1HN10.1°0.1°
C2N2HN22HN21179.9°180.0°
F1C2AC3AC1A118.4°118.9°
F1C2AC3AH2A124.9°122.2°
F1C2AC1AH2A124.8°122.3°
F1C2AC3AC4A80.1°112.4°
F1C2AC1AN91147.7°114.8°
F1C2AC1AO4A92.9°125.4°
F1C2AC1AH1A27.7°5.7°
F1C2AC3AH3A165.3°128.8°
C3AC2AC1AH2A116.8°118.8°
C2AC3AC4AH3A114.6°118.8°
C2AC3AC4AC5A159.9°137.4°
C2AC3AC4AO4A38.1°17.6°
C3AC2AC1AN9193.9°126.4°
C3AC2AC1AO4A25.5°6.6°
C3AC2AC1AH1A146.0°113.2°
C2AC3AC4AH4A79.1°101.5°
C1AC2AC3AC4A38.3°6.6°
C2AC1AO4AC4A1.5°18.5°
C2AC1AN91C4187.3°84.6°
C2AC1AN91O4A115.6°118.9°
C2AC1AN91H1A119.6°120.4°
C2AC1AO4AH1A119.7°119.6°
C2AC1AN91C8190.5°95.4°
C1AC2AC3AH3A76.3°112.3°
C3AC4AC5AO4A117.2°118.2°
C3AC4AC5AH4A121.0°121.0°
C3AC4AO4AH4A116.4°119.2°
C3AC4AO4AC1A23.2°22.8°
C3AC4AC5AO5A62.0°15.2°
C4AC3AC2AH2A155.0°125.4°
C3AC4AC5AH5A1178.0°135.3°
C3AC4AC5AH5A258.0°104.9°
C2'C3'O3'H3'121.9°122.1°
C3'C2'F2H2'123.6°122.4°
C2'C3'O3'P1193.8°127.1°
C3'C2'C1'H1'146.7°118.0°
C2'C3'C4'H4'78.9°99.7°
O3'C3'C2'F243.5°10.6°
C3'O3'P11O5A70.8°76.8°
C3'O3'P11O2147.2°43.2°
C3'O3'P11O11169.5°163.2°
O3'C3'C2'H2'81.5°111.7°
O3'C3'C4'H4'41.9°19.3°
F2C2'C1'H1'29.1°0.9°
F2C2'C3'H3'166.2°132.9°
N21C21N31N11180.0°179.8°
N21C21N31C41180.0°179.7°
N21C21N11C61180.0°179.6°
N21C21N11HN110.0°0.2°
C21N21H212H211180.0°180.0°
N31C21N11C610.0°0.1°
C21N31C41C510.0°0.1°
C21N31C41N91179.3°180.0°
N31C21N11HN11180.0°180.0°
N31C21N21H2120.0°0.0°
N31C21N21H211180.0°180.0°
N11C21N31C410.0°0.1°
C21N11C61HN11180.0°179.9°
C21N11C61O61179.9°180.0°
C21N11C61C510.0°0.1°
N11C21N21H212180.0°179.8°
N11C21N21H2110.0°0.2°
N31C41C51N91179.4°179.9°
N31C41C51C610.0°0.1°
N31C41N91C1A1.7°0.1°
N31C41C51N71179.9°179.9°
N31C41N91C81179.9°179.9°
N11C61C51C410.0°0.1°
N11C61O61C51179.9°179.8°
N11C61C51N71179.9°180.0°
O3'P11O5AC5A65.3°102.7°
O3'P11O5AO21119.0°120.0°
O3'P11O5AO11119.7°120.0°
O3'P11O21O11121.1°120.0°
P11O3'C3'H3'28.1°5.0°
O3'P11O11H1121.2°180.0°
C5AC4AO4AH4A121.1°121.0°
C5AC4AO4AC1A145.7°142.6°
C4AC5AO5AH5A1120.0°120.1°
C4AC5AO5AH5A2120.0°120.1°
C4AC5AO5AP11170.8°166.6°
C5AC4AC3AH3A45.2°18.6°
C4AC5AH5A1H5A2119.9°119.8°
C4AO4AC1AN91114.4°138.2°
O4AC4AC5AO5A55.3°103.0°
C4AO4AC1AH1A121.2°101.2°
O4AC4AC3AH3A76.5°101.2°
O4AC4AC5AH5A164.7°17.1°
O4AC4AC5AH5A2175.3°136.9°
C41C51C61O61179.9°180.0°
C41C51C61N71180.0°179.9°
C51C41N91C1A179.0°180.0°
C51C41N91C810.8°0.1°
C41C51N71C810.0°0.0°
N91C41C51C61179.5°180.0°
C41N91C1AC81177.9°179.9°
C41N91C1AO4A157.1°156.5°
N91C41C51N710.5°0.1°
C41N91C81N710.9°0.1°
C41N91C1AH1A32.3°35.8°
C41N91C81H81179.1°180.0°
O61C61C51N710.1°0.1°
O61C61N11HN110.1°0.2°
C61C51N71C81180.0°180.0°
C51C61N11HN11180.0°180.0°
N91C1AO4AH1A124.4°120.6°
C1AN91C81N71179.1°180.0°
N91C1AC2AH2A22.9°7.5°
C1AN91C81H810.9°0.0°
O4AC1AN91C8125.1°23.6°
O4AC1AC2AH2A142.3°112.3°
C1AO4AC4AH4A93.2°96.4°
C51N71C81N910.6°0.0°
C51N71C81H81179.4°180.0°
N91C81N71H81180.0°180.0°
C81N91C1AH1A149.9°144.2°
C5AO5AP11O21175.7°137.3°
C5AO5AP11O1154.4°17.3°
O5AC5AC4AH4A177.0°136.2°
O5AC5AH5A1H5A2120.0°119.9°
O5AP11O21O11120.2°120.0°
P11O5AC5AH5A169.2°46.5°
P11O5AC5AH5A250.8°73.3°
O5AP11O11H1119.3°60.0°
O21P11O11H10.0°60.0°
H1'C1'C2'H2'96.2°123.2°
H1AC1AC2AH2A97.1°128.0°
H2'C2'C3'H3'41.3°10.6°
H2AC2AC3AH3A40.4°6.6°
H3'C3'C4'H4'166.5°141.7°
H3AC3AC4AH4A166.2°139.7°
H4'C4'C5'H5'163.5°166.3°
H4'C4'C5'H5'256.4°73.6°
H4AC4AC5AH5A157.0°103.7°
H4AC4AC5AH5A263.0°16.1°

222415

PDB entries from 2024-07-10

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