GGC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CB1 | CG1 | sing | 1.53Å | 1.53Å | |
CB1 | CA1 | sing | 1.53Å | 1.54Å | |
CB1 | HB11 | sing | 1.09Å | 1.10Å | |
CB1 | HB12 | sing | 1.09Å | 1.10Å | |
CG1 | CD1 | sing | 1.51Å | 1.52Å | |
CG1 | HG11 | sing | 1.09Å | 1.10Å | |
CG1 | HG12 | sing | 1.09Å | 1.10Å | |
CD1 | OE1 | doub | 1.21Å | 1.23Å | |
CD1 | N2 | sing | 1.35Å | 1.33Å | |
C1 | O11 | doub | 1.21Å | 1.24Å | |
C1 | O12 | sing | 1.34Å | 1.25Å | |
C1 | CA1 | sing | 1.51Å | 1.51Å | |
O12 | HO2 | sing | 0.97Å | 0.95Å | |
N1 | CA1 | sing | 1.47Å | 1.48Å | |
N1 | HN11 | sing | 1.01Å | 1.00Å | |
N1 | HN12 | sing | 1.01Å | 1.00Å | |
CA1 | HA1 | sing | 1.09Å | 1.10Å | |
N2 | CA2 | sing | 1.46Å | 1.46Å | |
N2 | HN2 | sing | 0.97Å | 1.00Å | |
CA2 | CB2 | sing | 1.53Å | 1.54Å | |
CA2 | C2 | sing | 1.51Å | 1.54Å | |
CA2 | HA2 | sing | 1.09Å | 1.10Å | |
CB2 | SG2 | sing | 1.81Å | 1.83Å | |
CB2 | HB21 | sing | 1.09Å | 1.10Å | |
CB2 | HB22 | sing | 1.09Å | 1.10Å | |
SG2 | C10 | sing | 1.81Å | 1.81Å | |
C2 | O2 | doub | 1.21Å | 1.23Å | |
C2 | N3 | sing | 1.35Å | 1.32Å | |
C1' | C2' | doub | 1.36Å | 1.42Å | Aromatic |
C1' | C8A | sing | 1.40Å | 1.43Å | Aromatic |
C1' | H1' | sing | 1.08Å | 1.08Å | |
C2' | C3' | sing | 1.39Å | 1.42Å | Aromatic |
C2' | H2' | sing | 1.08Å | 1.08Å | |
C3' | C4' | doub | 1.36Å | 1.42Å | Aromatic |
C3' | H3' | sing | 1.08Å | 1.08Å | |
C4' | C4A | sing | 1.40Å | 1.44Å | Aromatic |
C4' | H4' | sing | 1.08Å | 1.08Å | |
C4A | C8A | doub | 1.42Å | 1.50Å | Aromatic |
C4A | C5' | sing | 1.40Å | 1.45Å | Aromatic |
C8A | C8' | sing | 1.41Å | 1.42Å | Aromatic |
C8' | C7' | doub | 1.36Å | 1.42Å | Aromatic |
C8' | H8' | sing | 1.08Å | 1.08Å | |
C7' | C6' | sing | 1.39Å | 1.43Å | Aromatic |
C7' | H7' | sing | 1.08Å | 1.08Å | |
C6' | C5' | doub | 1.36Å | 1.42Å | Aromatic |
C6' | H6' | sing | 1.08Å | 1.08Å | |
C5' | C10 | sing | 1.51Å | 1.55Å | |
C10 | H101 | sing | 1.09Å | 1.10Å | |
C10 | H102 | sing | 1.09Å | 1.10Å | |
N3 | CA3 | sing | 1.46Å | 1.45Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
CA3 | C3 | sing | 1.51Å | 1.52Å | |
CA3 | HA31 | sing | 1.09Å | 1.10Å | |
CA3 | HA32 | sing | 1.09Å | 1.10Å | |
C3 | O31 | doub | 1.21Å | 1.26Å | |
C3 | O32 | sing | 1.34Å | 1.26Å | |
O32 | H32 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CG1 | CB1 | CA1 | 115.7° | 109.5° |
CG1 | CB1 | HB11 | 106.0° | 109.5° |
CG1 | CB1 | HB12 | 107.4° | 109.5° |
CB1 | CG1 | CD1 | 112.5° | 109.5° |
CB1 | CG1 | HG11 | 107.8° | 109.4° |
CB1 | CG1 | HG12 | 108.5° | 109.4° |
CA1 | CB1 | HB11 | 106.0° | 109.4° |
CA1 | CB1 | HB12 | 107.4° | 109.4° |
CB1 | CA1 | C1 | 110.5° | 109.5° |
CB1 | CA1 | N1 | 109.9° | 109.4° |
CB1 | CA1 | HA1 | 107.9° | 109.5° |
HB11 | CB1 | HB12 | 114.5° | 109.5° |
CD1 | CG1 | HG11 | 107.8° | 109.5° |
CD1 | CG1 | HG12 | 108.4° | 109.5° |
CG1 | CD1 | OE1 | 121.2° | 120.0° |
CG1 | CD1 | N2 | 115.6° | 120.0° |
HG11 | CG1 | HG12 | 111.9° | 109.5° |
OE1 | CD1 | N2 | 123.2° | 120.0° |
CD1 | N2 | CA2 | 123.0° | 120.1° |
CD1 | N2 | HN2 | 118.5° | 120.0° |
O11 | C1 | O12 | 124.3° | 120.0° |
O11 | C1 | CA1 | 117.5° | 120.0° |
O12 | C1 | CA1 | 118.2° | 120.0° |
C1 | O12 | HO2 | 109.5° | 120.0° |
C1 | CA1 | N1 | 107.7° | 109.4° |
C1 | CA1 | HA1 | 110.1° | 109.5° |
CA1 | N1 | HN11 | 109.4° | 106.7° |
CA1 | N1 | HN12 | 109.5° | 106.6° |
N1 | CA1 | HA1 | 110.8° | 109.5° |
HN11 | N1 | HN12 | 109.5° | 106.7° |
CA2 | N2 | HN2 | 118.5° | 120.0° |
N2 | CA2 | CB2 | 110.1° | 109.5° |
N2 | CA2 | C2 | 107.6° | 109.5° |
N2 | CA2 | HA2 | 110.2° | 109.4° |
CB2 | CA2 | C2 | 109.2° | 109.5° |
CB2 | CA2 | HA2 | 108.6° | 109.5° |
CA2 | CB2 | SG2 | 119.5° | 109.5° |
CA2 | CB2 | HB21 | 103.9° | 109.4° |
CA2 | CB2 | HB22 | 106.3° | 109.5° |
C2 | CA2 | HA2 | 111.1° | 109.5° |
CA2 | C2 | O2 | 121.6° | 120.0° |
CA2 | C2 | N3 | 116.7° | 120.0° |
SG2 | CB2 | HB21 | 104.0° | 109.5° |
SG2 | CB2 | HB22 | 106.3° | 109.5° |
CB2 | SG2 | C10 | 99.0° | 100.0° |
HB21 | CB2 | HB22 | 117.7° | 109.5° |
SG2 | C10 | C5' | 119.2° | 109.5° |
SG2 | C10 | H101 | 104.1° | 109.5° |
SG2 | C10 | H102 | 106.3° | 109.4° |
O2 | C2 | N3 | 121.7° | 120.0° |
C2 | N3 | CA3 | 119.7° | 120.0° |
C2 | N3 | HN3 | 120.2° | 120.0° |
C2' | C1' | C8A | 120.3° | 119.6° |
C2' | C1' | H1' | 119.9° | 120.2° |
C1' | C2' | C3' | 120.9° | 121.0° |
C1' | C2' | H2' | 119.6° | 119.5° |
C8A | C1' | H1' | 119.9° | 120.2° |
C1' | C8A | C4A | 119.7° | 119.4° |
C1' | C8A | C8' | 120.5° | 121.2° |
C3' | C2' | H2' | 119.6° | 119.5° |
C2' | C3' | C4' | 120.7° | 121.0° |
C2' | C3' | H3' | 119.7° | 119.5° |
C4' | C3' | H3' | 119.7° | 119.5° |
C3' | C4' | C4A | 120.8° | 119.7° |
C3' | C4' | H4' | 119.6° | 120.2° |
C4A | C4' | H4' | 119.6° | 120.2° |
C4' | C4A | C8A | 117.7° | 119.3° |
C4' | C4A | C5' | 123.7° | 121.4° |
C8A | C4A | C5' | 118.6° | 119.3° |
C4A | C8A | C8' | 119.8° | 119.4° |
C4A | C5' | C6' | 119.1° | 119.7° |
C4A | C5' | C10 | 124.8° | 120.1° |
C8A | C8' | C7' | 119.8° | 119.7° |
C8A | C8' | H8' | 120.1° | 120.2° |
C7' | C8' | H8' | 120.1° | 120.2° |
C8' | C7' | C6' | 121.4° | 121.0° |
C8' | C7' | H7' | 119.3° | 119.5° |
C6' | C7' | H7' | 119.3° | 119.5° |
C7' | C6' | C5' | 121.3° | 121.0° |
C7' | C6' | H6' | 119.4° | 119.5° |
C5' | C6' | H6' | 119.3° | 119.5° |
C6' | C5' | C10 | 116.1° | 120.2° |
C5' | C10 | H101 | 104.1° | 109.5° |
C5' | C10 | H102 | 106.4° | 109.5° |
H101 | C10 | H102 | 117.4° | 109.5° |
CA3 | N3 | HN3 | 120.1° | 120.1° |
N3 | CA3 | C3 | 112.8° | 109.5° |
N3 | CA3 | HA31 | 107.7° | 109.5° |
N3 | CA3 | HA32 | 108.4° | 109.5° |
C3 | CA3 | HA31 | 107.6° | 109.4° |
C3 | CA3 | HA32 | 108.4° | 109.5° |
CA3 | C3 | O31 | 118.3° | 120.0° |
CA3 | C3 | O32 | 118.0° | 120.0° |
HA31 | CA3 | HA32 | 112.1° | 109.5° |
O31 | C3 | O32 | 123.6° | 120.0° |
C3 | O32 | H32 | 109.5° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CG1 | CB1 | CA1 | HB11 | 117.2° | 120.0° |
CG1 | CB1 | CA1 | HB12 | 120.0° | 120.0° |
CG1 | CB1 | HB11 | HB12 | 118.3° | 120.0° |
CB1 | CG1 | CD1 | HG11 | 118.7° | 120.0° |
CB1 | CG1 | CD1 | HG12 | 120.0° | 120.0° |
CB1 | CG1 | HG11 | HG12 | 119.2° | 119.9° |
CB1 | CG1 | CD1 | OE1 | 8.2° | 0.0° |
CB1 | CG1 | CD1 | N2 | 173.0° | 180.0° |
CG1 | CB1 | CA1 | C1 | 33.5° | 180.0° |
CG1 | CB1 | CA1 | N1 | 152.2° | 60.0° |
CG1 | CB1 | CA1 | HA1 | 86.9° | 60.0° |
CA1 | CB1 | HB11 | HB12 | 118.2° | 119.9° |
CA1 | CB1 | CG1 | CD1 | 160.8° | 180.0° |
CA1 | CB1 | CG1 | HG11 | 80.6° | 60.0° |
CA1 | CB1 | CG1 | HG12 | 40.8° | 60.0° |
CB1 | CA1 | C1 | O11 | 74.0° | 89.9° |
CB1 | CA1 | C1 | O12 | 106.1° | 90.0° |
CB1 | CA1 | C1 | N1 | 120.0° | 119.9° |
CB1 | CA1 | C1 | HA1 | 119.1° | 120.0° |
CB1 | CA1 | N1 | HA1 | 119.2° | 120.0° |
CB1 | CA1 | N1 | HN11 | 119.5° | 60.0° |
CB1 | CA1 | N1 | HN12 | 120.5° | 53.8° |
HB11 | CB1 | CG1 | CD1 | 82.1° | 60.0° |
HB11 | CB1 | CG1 | HG11 | 36.6° | 180.0° |
HB11 | CB1 | CG1 | HG12 | 157.9° | 60.0° |
HB11 | CB1 | CA1 | C1 | 150.7° | 60.0° |
HB11 | CB1 | CA1 | N1 | 90.7° | 60.0° |
HB11 | CB1 | CA1 | HA1 | 30.2° | 180.0° |
HB12 | CB1 | CG1 | CD1 | 40.8° | 60.0° |
HB12 | CB1 | CG1 | HG11 | 159.4° | 60.0° |
HB12 | CB1 | CG1 | HG12 | 79.2° | 180.0° |
HB12 | CB1 | CA1 | C1 | 86.5° | 60.0° |
HB12 | CB1 | CA1 | N1 | 32.2° | 179.9° |
HB12 | CB1 | CA1 | HA1 | 153.1° | 60.1° |
CD1 | CG1 | HG11 | HG12 | 119.1° | 120.0° |
CG1 | CD1 | OE1 | N2 | 178.8° | 179.9° |
CG1 | CD1 | N2 | CA2 | 177.8° | 180.0° |
CG1 | CD1 | N2 | HN2 | 2.2° | 0.1° |
HG11 | CG1 | CD1 | OE1 | 126.9° | 119.9° |
HG11 | CG1 | CD1 | N2 | 54.3° | 60.0° |
HG12 | CG1 | CD1 | OE1 | 111.8° | 120.0° |
HG12 | CG1 | CD1 | N2 | 67.0° | 60.1° |
OE1 | CD1 | N2 | CA2 | 3.4° | 0.1° |
OE1 | CD1 | N2 | HN2 | 176.6° | 180.0° |
CD1 | N2 | CA2 | HN2 | 180.0° | 179.9° |
CD1 | N2 | CA2 | CB2 | 139.2° | 150.0° |
CD1 | N2 | CA2 | C2 | 101.8° | 89.9° |
CD1 | N2 | CA2 | HA2 | 19.4° | 30.1° |
O11 | C1 | O12 | CA1 | 179.8° | 179.9° |
O11 | C1 | O12 | HO2 | 0.0° | 0.0° |
O11 | C1 | CA1 | N1 | 166.0° | 30.0° |
O11 | C1 | CA1 | HA1 | 45.1° | 150.0° |
O12 | C1 | CA1 | N1 | 13.9° | 150.0° |
O12 | C1 | CA1 | HA1 | 134.7° | 30.0° |
CA1 | C1 | O12 | HO2 | 179.8° | 180.0° |
C1 | CA1 | N1 | HA1 | 120.4° | 120.0° |
C1 | CA1 | N1 | HN11 | 0.9° | 60.0° |
C1 | CA1 | N1 | HN12 | 119.1° | 173.8° |
CA1 | N1 | HN11 | HN12 | 120.0° | 113.8° |
HN11 | N1 | CA1 | HA1 | 121.4° | 180.0° |
HN12 | N1 | CA1 | HA1 | 1.3° | 66.2° |
N2 | CA2 | CB2 | C2 | 118.0° | 120.1° |
N2 | CA2 | CB2 | HA2 | 120.7° | 120.0° |
N2 | CA2 | C2 | HA2 | 120.7° | 120.0° |
N2 | CA2 | CB2 | SG2 | 74.2° | 60.0° |
N2 | CA2 | CB2 | HB21 | 170.6° | 60.1° |
N2 | CA2 | CB2 | HB22 | 45.8° | 180.0° |
N2 | CA2 | C2 | O2 | 26.0° | 149.9° |
N2 | CA2 | C2 | N3 | 153.9° | 30.0° |
HN2 | N2 | CA2 | CB2 | 40.8° | 30.1° |
HN2 | N2 | CA2 | C2 | 78.2° | 90.0° |
HN2 | N2 | CA2 | HA2 | 160.6° | 150.0° |
CB2 | CA2 | C2 | HA2 | 119.8° | 120.0° |
CA2 | CB2 | SG2 | HB21 | 115.2° | 120.0° |
CA2 | CB2 | SG2 | HB22 | 120.0° | 120.0° |
CA2 | CB2 | HB21 | HB22 | 117.1° | 120.0° |
CA2 | CB2 | SG2 | C10 | 101.9° | 180.0° |
CB2 | CA2 | C2 | O2 | 93.5° | 90.0° |
CB2 | CA2 | C2 | N3 | 86.6° | 90.1° |
C2 | CA2 | CB2 | SG2 | 167.8° | 180.0° |
C2 | CA2 | CB2 | HB21 | 52.6° | 60.0° |
C2 | CA2 | CB2 | HB22 | 72.2° | 59.9° |
CA2 | C2 | O2 | N3 | 179.9° | 179.9° |
CA2 | C2 | N3 | CA3 | 179.7° | 180.0° |
CA2 | C2 | N3 | HN3 | 0.3° | 0.0° |
HA2 | CA2 | CB2 | SG2 | 46.5° | 60.0° |
HA2 | CA2 | CB2 | HB21 | 68.7° | 180.0° |
HA2 | CA2 | CB2 | HB22 | 166.5° | 60.0° |
HA2 | CA2 | C2 | O2 | 146.7° | 30.0° |
HA2 | CA2 | C2 | N3 | 33.2° | 150.0° |
SG2 | CB2 | HB21 | HB22 | 117.2° | 120.0° |
CB2 | SG2 | C10 | C5' | 66.7° | 180.0° |
CB2 | SG2 | C10 | H101 | 178.0° | 60.0° |
CB2 | SG2 | C10 | H102 | 53.3° | 60.0° |
HB21 | CB2 | SG2 | C10 | 13.3° | 60.0° |
HB22 | CB2 | SG2 | C10 | 138.2° | 60.0° |
SG2 | C10 | C5' | C4A | 103.5° | 90.3° |
SG2 | C10 | C5' | C6' | 79.1° | 90.0° |
SG2 | C10 | C5' | H101 | 115.3° | 120.0° |
SG2 | C10 | C5' | H102 | 120.0° | 120.0° |
SG2 | C10 | H101 | H102 | 117.2° | 119.9° |
O2 | C2 | N3 | CA3 | 0.5° | 0.1° |
O2 | C2 | N3 | HN3 | 179.6° | 180.0° |
C2 | N3 | CA3 | HN3 | 180.0° | 180.0° |
C2 | N3 | CA3 | C3 | 108.6° | 180.0° |
C2 | N3 | CA3 | HA31 | 10.0° | 60.1° |
C2 | N3 | CA3 | HA32 | 131.4° | 59.9° |
C2' | C1' | C8A | H1' | 180.0° | 179.9° |
C1' | C2' | C3' | H2' | 180.0° | 180.0° |
C1' | C2' | C3' | C4' | 0.0° | 0.0° |
C1' | C2' | C3' | H3' | 180.0° | 179.9° |
C2' | C1' | C8A | C4A | 0.0° | 0.3° |
C2' | C1' | C8A | C8' | 179.6° | 180.0° |
C8A | C1' | C2' | C3' | 0.1° | 0.0° |
C8A | C1' | C2' | H2' | 179.9° | 180.0° |
C1' | C8A | C4A | C4' | 0.1° | 0.6° |
C1' | C8A | C4A | C8' | 179.5° | 179.8° |
C1' | C8A | C4A | C5' | 179.4° | 179.7° |
C1' | C8A | C8' | C7' | 179.5° | 180.0° |
C1' | C8A | C8' | H8' | 0.5° | 0.1° |
H1' | C1' | C2' | C3' | 179.9° | 179.9° |
H1' | C1' | C2' | H2' | 0.1° | 0.1° |
H1' | C1' | C8A | C4A | 179.9° | 179.8° |
H1' | C1' | C8A | C8' | 0.4° | 0.0° |
C2' | C3' | C4' | H3' | 180.0° | 179.9° |
C2' | C3' | C4' | C4A | 0.2° | 0.3° |
C2' | C3' | C4' | H4' | 179.8° | 180.0° |
H2' | C2' | C3' | C4' | 180.0° | 180.0° |
H2' | C2' | C3' | H3' | 0.0° | 0.1° |
C3' | C4' | C4A | H4' | 180.0° | 179.7° |
C3' | C4' | C4A | C8A | 0.2° | 0.6° |
C3' | C4' | C4A | C5' | 179.5° | 179.7° |
H3' | C3' | C4' | C4A | 179.8° | 179.8° |
H3' | C3' | C4' | H4' | 0.2° | 0.1° |
C4' | C4A | C8A | C5' | 179.3° | 179.1° |
C4' | C4A | C8A | C8' | 179.4° | 179.7° |
C4' | C4A | C5' | C6' | 179.5° | 179.7° |
C4' | C4A | C5' | C10 | 2.2° | 0.6° |
H4' | C4' | C4A | C8A | 179.8° | 179.7° |
H4' | C4' | C4A | C5' | 0.5° | 0.6° |
C4A | C8A | C8' | C7' | 0.1° | 0.3° |
C4A | C8A | C8' | H8' | 180.0° | 179.8° |
C8A | C4A | C5' | C6' | 0.2° | 0.6° |
C8A | C4A | C5' | C10 | 177.1° | 179.8° |
C5' | C4A | C8A | C8' | 0.1° | 0.5° |
C4A | C5' | C6' | C7' | 0.3° | 0.4° |
C4A | C5' | C6' | C10 | 177.5° | 179.6° |
C4A | C5' | C6' | H6' | 179.8° | 179.7° |
C4A | C5' | C10 | H101 | 141.1° | 149.7° |
C4A | C5' | C10 | H102 | 16.5° | 29.7° |
C8A | C8' | C7' | H8' | 180.0° | 179.9° |
C8A | C8' | C7' | C6' | 0.1° | 0.0° |
C8A | C8' | C7' | H7' | 179.9° | 180.0° |
C8' | C7' | C6' | H7' | 180.0° | 180.0° |
C8' | C7' | C6' | C5' | 0.2° | 0.1° |
C8' | C7' | C6' | H6' | 179.8° | 180.0° |
H8' | C8' | C7' | C6' | 179.9° | 180.0° |
H8' | C8' | C7' | H7' | 0.1° | 0.0° |
C7' | C6' | C5' | H6' | 180.0° | 179.9° |
C7' | C6' | C5' | C10 | 177.2° | 180.0° |
H7' | C7' | C6' | C5' | 179.8° | 179.9° |
H7' | C7' | C6' | H6' | 0.2° | 0.0° |
C6' | C5' | C10 | H101 | 36.2° | 30.0° |
C6' | C5' | C10 | H102 | 160.9° | 150.0° |
H6' | C6' | C5' | C10 | 2.7° | 0.1° |
C5' | C10 | H101 | H102 | 117.2° | 120.0° |
N3 | CA3 | C3 | HA31 | 118.6° | 120.0° |
N3 | CA3 | C3 | HA32 | 120.0° | 120.1° |
N3 | CA3 | HA31 | HA32 | 119.1° | 120.0° |
N3 | CA3 | C3 | O31 | 167.5° | 0.0° |
N3 | CA3 | C3 | O32 | 12.4° | 179.9° |
HN3 | N3 | CA3 | C3 | 71.4° | 0.0° |
HN3 | N3 | CA3 | HA31 | 170.0° | 120.0° |
HN3 | N3 | CA3 | HA32 | 48.6° | 120.0° |
C3 | CA3 | HA31 | HA32 | 119.1° | 120.0° |
CA3 | C3 | O31 | O32 | 179.9° | 180.0° |
CA3 | C3 | O32 | H32 | 179.9° | 180.0° |
HA31 | CA3 | C3 | O31 | 73.9° | 120.0° |
HA31 | CA3 | C3 | O32 | 106.2° | 60.0° |
HA32 | CA3 | C3 | O31 | 47.5° | 120.0° |
HA32 | CA3 | C3 | O32 | 132.4° | 60.0° |
O31 | C3 | O32 | H32 | 0.0° | 0.1° |