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Summary Geometry Related PDB entries

GG6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C2	sing	1.42Å	1.44Å
O1	HO1	sing	0.97Å	0.95Å
C2	C3	sing	1.52Å	1.56Å
C2	C1	sing	1.53Å	1.57Å
C2	H2	sing	1.10Å	1.10Å
C3	H31	sing	1.10Å	1.10Å
C3	H32	sing	1.09Å	1.10Å
C3	H33	sing	1.09Å	1.10Å
C1	O2	sing	1.42Å	1.44Å
C1	P	sing	1.79Å	1.79Å
C1	H1	sing	1.10Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
P	O3	doub	1.50Å	1.58Å
P	O4	sing	1.62Å	1.44Å
P	O5	sing	1.62Å	1.57Å
O4	HO4	sing	0.98Å	0.95Å
O5	HO5	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	O1	HO1	109.5°	106.7°
O1	C2	C3	109.3°	109.4°
O1	C2	C1	111.5°	108.4°
O1	C2	H2	108.1°	107.6°
C3	C2	C1	109.1°	114.4°
C3	C2	H2	110.5°	108.2°
C2	C3	H31	109.5°	110.0°
C2	C3	H32	109.5°	111.8°
C2	C3	H33	109.5°	111.4°
C1	C2	H2	108.3°	108.6°
C2	C1	O2	114.2°	109.0°
C2	C1	P	113.0°	117.8°
C2	C1	H1	102.9°	108.7°
H31	C3	H32	109.5°	108.2°
H31	C3	H33	109.4°	106.0°
H32	C3	H33	109.5°	109.2°
O2	C1	P	107.4°	104.3°
O2	C1	H1	109.0°	108.1°
C1	O2	HO2	109.5°	107.5°
P	C1	H1	110.3°	108.5°
C1	P	O3	108.8°	115.7°
C1	P	O4	107.4°	103.1°
C1	P	O5	112.0°	104.0°
O3	P	O4	109.4°	114.5°
O3	P	O5	109.8°	115.2°
O4	P	O5	109.3°	102.8°
P	O4	HO4	109.5°	118.9°
P	O5	HO5	109.5°	119.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C2	C3	C1	122.2°	121.9°
O1	C2	C3	H2	118.8°	117.0°
O1	C2	C1	H2	118.8°	116.7°
O1	C2	C3	H31	166.2°	169.9°
O1	C2	C3	H32	73.8°	49.6°
O1	C2	C3	H33	46.2°	72.9°
O1	C2	C1	O2	62.5°	64.8°
O1	C2	C1	P	60.6°	53.7°
O1	C2	C1	H1	179.6°	177.6°
HO1	O1	C2	C3	67.6°	98.0°
HO1	O1	C2	C1	53.1°	27.4°
HO1	O1	C2	H2	172.0°	144.7°
C3	C2	C1	H2	120.3°	120.9°
C2	C3	H31	H32	120.0°	122.4°
C2	C3	H31	H33	120.0°	120.5°
C2	C3	H32	H33	120.0°	123.7°
C3	C2	C1	O2	58.4°	57.6°
C3	C2	C1	P	178.5°	176.1°
C3	C2	C1	H1	59.5°	60.0°
C1	C2	C3	H31	43.9°	68.2°
C1	C2	C3	H32	163.9°	171.5°
C1	C2	C3	H33	76.0°	49.0°
C2	C1	O2	P	126.1°	126.6°
C2	C1	O2	H1	114.4°	118.1°
C2	C1	P	H1	114.5°	124.0°
C2	C1	O2	HO2	126.3°	121.9°
C2	C1	P	O3	51.9°	60.0°
C2	C1	P	O4	170.2°	65.7°
C2	C1	P	O5	69.8°	172.7°
H2	C2	C3	H31	75.0°	52.9°
H2	C2	C3	H32	45.0°	67.3°
H2	C2	C3	H33	165.0°	170.1°
H2	C2	C1	O2	178.7°	178.6°
H2	C2	C1	P	58.2°	63.0°
H2	C2	C1	H1	60.8°	60.9°
H31	C3	H32	H33	119.9°	114.9°
O2	C1	P	H1	118.6°	115.0°
O2	C1	P	O3	178.7°	61.0°
O2	C1	P	O4	63.0°	173.3°
O2	C1	P	O5	57.1°	66.3°
P	C1	O2	HO2	107.6°	111.4°
C1	P	O3	O4	117.1°	119.7°
C1	P	O3	O5	123.0°	121.4°
C1	P	O4	O5	121.8°	107.9°
C1	P	O4	HO4	149.6°	177.7°
C1	P	O5	HO5	67.6°	178.2°
H1	C1	O2	HO2	11.9°	3.9°
H1	C1	P	O3	62.7°	176.0°
H1	C1	P	O4	55.7°	58.3°
H1	C1	P	O5	175.7°	48.7°
O3	P	O4	O5	120.3°	125.6°
O3	P	O4	HO4	92.5°	51.2°
O3	P	O5	HO5	171.4°	50.7°
O4	P	O5	HO5	51.4°	74.5°
O5	P	O4	HO4	27.8°	74.4°

223532

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