GFP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.53Å | 1.55Å | |
C1 | O1 | sing | 1.43Å | 1.40Å | |
C1 | O5 | sing | 1.43Å | 1.47Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
C2 | F2 | sing | 1.40Å | 1.39Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | C4 | sing | 1.53Å | 1.54Å | |
C3 | O3 | sing | 1.43Å | 1.41Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C4 | C5 | sing | 1.53Å | 1.54Å | |
C4 | O4 | sing | 1.43Å | 1.43Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C5 | O5 | sing | 1.43Å | 1.41Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | O6 | sing | 1.43Å | 1.42Å | |
C6 | H61 | sing | 1.09Å | 1.10Å | |
C6 | H62 | sing | 1.09Å | 1.10Å | |
O1 | P | sing | 1.61Å | 1.58Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
P | O1P | doub | 1.48Å | 1.49Å | |
P | O2P | sing | 1.61Å | 1.51Å | |
P | O3P | sing | 1.61Å | 1.50Å | |
O2P | HOP2 | sing | 0.97Å | 0.95Å | |
O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | O1 | 108.5° | 109.4° |
C2 | C1 | O5 | 111.6° | 109.8° |
C2 | C1 | H1 | 108.9° | 109.4° |
C1 | C2 | C3 | 104.8° | 109.0° |
C1 | C2 | F2 | 115.1° | 109.5° |
C1 | C2 | H2 | 110.2° | 109.6° |
O1 | C1 | O5 | 110.0° | 109.4° |
O1 | C1 | H1 | 110.5° | 109.4° |
C1 | O1 | P | 128.9° | 106.8° |
O5 | C1 | H1 | 107.4° | 109.4° |
C1 | O5 | C5 | 113.2° | 107.6° |
C3 | C2 | F2 | 112.9° | 109.6° |
C3 | C2 | H2 | 112.5° | 109.5° |
C2 | C3 | C4 | 116.3° | 108.6° |
C2 | C3 | O3 | 110.8° | 109.6° |
C2 | C3 | H3 | 101.9° | 109.6° |
F2 | C2 | H2 | 101.6° | 109.6° |
C4 | C3 | O3 | 103.0° | 109.7° |
C4 | C3 | H3 | 109.9° | 109.6° |
C3 | C4 | C5 | 111.0° | 109.0° |
C3 | C4 | O4 | 111.1° | 109.5° |
C3 | C4 | H4 | 107.3° | 109.5° |
O3 | C3 | H3 | 115.4° | 109.6° |
C3 | O3 | HO3 | 109.5° | 106.8° |
C5 | C4 | O4 | 109.5° | 109.6° |
C5 | C4 | H4 | 109.0° | 109.6° |
C4 | C5 | C6 | 114.8° | 109.4° |
C4 | C5 | O5 | 106.2° | 109.7° |
C4 | C5 | H5 | 108.4° | 109.5° |
O4 | C4 | H4 | 108.8° | 109.5° |
C4 | O4 | HO4 | 109.5° | 106.8° |
C6 | C5 | O5 | 110.1° | 109.4° |
C6 | C5 | H5 | 104.4° | 109.4° |
C5 | C6 | O6 | 109.6° | 109.5° |
C5 | C6 | H61 | 109.4° | 109.5° |
C5 | C6 | H62 | 109.4° | 109.5° |
O5 | C5 | H5 | 113.2° | 109.4° |
O6 | C6 | H61 | 109.4° | 109.4° |
O6 | C6 | H62 | 109.4° | 109.5° |
C6 | O6 | HO6 | 109.5° | 106.8° |
H61 | C6 | H62 | 109.6° | 109.5° |
O1 | P | O1P | 103.7° | 109.5° |
O1 | P | O2P | 106.0° | 109.5° |
O1 | P | O3P | 104.4° | 109.5° |
O1P | P | O2P | 115.5° | 109.4° |
O1P | P | O3P | 114.4° | 109.5° |
O2P | P | O3P | 111.5° | 109.5° |
P | O2P | HOP2 | 109.5° | 106.8° |
P | O3P | HOP3 | 109.5° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | O1 | O5 | 122.3° | 120.3° |
C2 | C1 | O1 | H1 | 119.3° | 119.8° |
C2 | C1 | O5 | H1 | 119.3° | 120.1° |
C1 | C2 | C3 | F2 | 126.0° | 119.9° |
C1 | C2 | C3 | H2 | 119.7° | 119.9° |
C1 | C2 | F2 | H2 | 119.0° | 120.2° |
C1 | C2 | C3 | C4 | 48.9° | 53.8° |
C1 | C2 | C3 | O3 | 166.1° | 173.6° |
C1 | C2 | C3 | H3 | 70.6° | 66.0° |
C2 | C1 | O5 | C5 | 68.1° | 67.6° |
C2 | C1 | O1 | P | 123.5° | 149.7° |
O1 | C1 | O5 | H1 | 120.3° | 119.9° |
O1 | C1 | C2 | C3 | 67.0° | 58.8° |
O1 | C1 | C2 | F2 | 57.6° | 61.1° |
O1 | C1 | C2 | H2 | 171.7° | 178.7° |
O1 | C1 | O5 | C5 | 52.3° | 52.4° |
C1 | O1 | P | O1P | 44.3° | 55.0° |
C1 | O1 | P | O2P | 166.3° | 65.0° |
C1 | O1 | P | O3P | 75.9° | 175.0° |
O5 | C1 | C2 | C3 | 54.3° | 61.3° |
O5 | C1 | C2 | F2 | 178.9° | 178.8° |
O5 | C1 | C2 | H2 | 67.0° | 58.6° |
C1 | O5 | C5 | C4 | 64.5° | 67.6° |
C1 | O5 | C5 | C6 | 170.7° | 172.3° |
C1 | O5 | C5 | H5 | 54.3° | 52.5° |
O5 | C1 | O1 | P | 114.3° | 90.0° |
H1 | C1 | C2 | C3 | 172.6° | 178.7° |
H1 | C1 | C2 | F2 | 62.8° | 58.7° |
H1 | C1 | C2 | H2 | 51.4° | 61.5° |
H1 | C1 | O5 | C5 | 172.6° | 172.3° |
H1 | C1 | O1 | P | 4.1° | 29.9° |
C3 | C2 | F2 | H2 | 120.7° | 120.2° |
C2 | C3 | C4 | O3 | 121.4° | 119.8° |
C2 | C3 | C4 | H3 | 115.0° | 119.8° |
C2 | C3 | O3 | H3 | 115.1° | 120.4° |
C2 | C3 | C4 | C5 | 51.5° | 53.8° |
C2 | C3 | C4 | O4 | 173.7° | 173.7° |
C2 | C3 | C4 | H4 | 67.4° | 66.2° |
C2 | C3 | O3 | HO3 | 153.9° | 60.0° |
F2 | C2 | C3 | C4 | 174.9° | 173.6° |
F2 | C2 | C3 | O3 | 67.9° | 66.5° |
F2 | C2 | C3 | H3 | 55.5° | 53.9° |
H2 | C2 | C3 | C4 | 70.8° | 66.1° |
H2 | C2 | C3 | O3 | 46.4° | 53.8° |
H2 | C2 | C3 | H3 | 169.7° | 174.1° |
C4 | C3 | O3 | H3 | 119.8° | 120.4° |
C3 | C4 | C5 | O4 | 123.1° | 119.9° |
C3 | C4 | C5 | H4 | 117.9° | 119.9° |
C3 | C4 | O4 | H4 | 117.9° | 120.2° |
C3 | C4 | C5 | C6 | 176.3° | 178.6° |
C3 | C4 | C5 | O5 | 54.5° | 61.3° |
C3 | C4 | C5 | H5 | 67.5° | 58.7° |
C4 | C3 | O3 | HO3 | 81.0° | 179.2° |
C3 | C4 | O4 | HO4 | 109.2° | 60.0° |
O3 | C3 | C4 | C5 | 173.0° | 173.6° |
O3 | C3 | C4 | O4 | 64.9° | 66.5° |
O3 | C3 | C4 | H4 | 54.0° | 53.7° |
H3 | C3 | C4 | C5 | 63.5° | 65.9° |
H3 | C3 | C4 | O4 | 58.7° | 53.9° |
H3 | C3 | C4 | H4 | 177.5° | 174.1° |
H3 | C3 | O3 | HO3 | 38.7° | 60.4° |
C5 | C4 | O4 | H4 | 119.1° | 120.3° |
C4 | C5 | C6 | O5 | 119.7° | 120.3° |
C4 | C5 | C6 | H5 | 118.5° | 119.9° |
C4 | C5 | O5 | H5 | 118.8° | 120.1° |
C4 | C5 | C6 | O6 | 50.7° | 174.9° |
C4 | C5 | C6 | H61 | 69.2° | 65.1° |
C4 | C5 | C6 | H62 | 170.7° | 54.9° |
C5 | C4 | O4 | HO4 | 13.8° | 179.6° |
O4 | C4 | C5 | C6 | 60.6° | 58.7° |
O4 | C4 | C5 | O5 | 177.6° | 178.8° |
O4 | C4 | C5 | H5 | 55.6° | 61.2° |
H4 | C4 | C5 | C6 | 58.4° | 61.5° |
H4 | C4 | C5 | O5 | 63.5° | 58.6° |
H4 | C4 | C5 | H5 | 174.6° | 178.6° |
H4 | C4 | O4 | HO4 | 132.9° | 60.2° |
C6 | C5 | O5 | H5 | 116.4° | 119.8° |
C5 | C6 | O6 | H61 | 120.0° | 120.0° |
C5 | C6 | O6 | H62 | 120.0° | 120.0° |
C5 | C6 | H61 | H62 | 120.0° | 120.0° |
C5 | C6 | O6 | HO6 | 78.2° | 180.0° |
O5 | C5 | C6 | O6 | 69.0° | 64.9° |
O5 | C5 | C6 | H61 | 171.1° | 55.1° |
O5 | C5 | C6 | H62 | 51.0° | 175.1° |
H5 | C5 | C6 | O6 | 169.2° | 54.9° |
H5 | C5 | C6 | H61 | 49.3° | 174.9° |
H5 | C5 | C6 | H62 | 70.8° | 65.1° |
O6 | C6 | H61 | H62 | 119.9° | 120.0° |
H61 | C6 | O6 | HO6 | 41.8° | 60.0° |
H62 | C6 | O6 | HO6 | 161.8° | 60.0° |
O1 | P | O1P | O2P | 115.4° | 120.0° |
O1 | P | O1P | O3P | 113.1° | 120.0° |
O1 | P | O2P | O3P | 113.0° | 120.0° |
O1 | P | O2P | HOP2 | 141.7° | 60.0° |
O1 | P | O3P | HOP3 | 8.5° | 180.0° |
O1P | P | O2P | O3P | 132.8° | 120.0° |
O1P | P | O2P | HOP2 | 104.2° | 180.0° |
O1P | P | O3P | HOP3 | 121.1° | 60.0° |
O2P | P | O3P | HOP3 | 105.5° | 60.0° |
O3P | P | O2P | HOP2 | 28.6° | 60.0° |