GFM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.32Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å | |
| C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.41Å | |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C1' | sing | 1.47Å | 1.46Å | |
| PA | O1A | doub | 1.48Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.72Å | |
| PA | O3A | sing | 1.61Å | 1.52Å | |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PB | O1B | sing | 1.61Å | 1.72Å | |
| PB | O2B | doub | 1.48Å | 1.48Å | |
| PB | O3A | sing | 1.61Å | 1.51Å | |
| PB | C3B | sing | 1.82Å | 1.89Å | |
| PG | O1G | sing | 1.61Å | 1.72Å | |
| PG | O2G | sing | 1.61Å | 1.72Å | |
| PG | C3B | sing | 1.82Å | 1.87Å | |
| PG | O3G | doub | 1.48Å | 1.48Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C3B | F3B2 | sing | 1.40Å | 1.36Å | |
| C3B | C3B3 | sing | 1.53Å | 1.54Å | |
| C3B3 | HC3B | sing | 1.09Å | 1.10Å | |
| C3B3 | HC3A | sing | 1.09Å | 1.10Å | |
| C3B3 | HC3C | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O1B | H16 | sing | 0.97Å | 0.95Å | |
| O1G | H17 | sing | 0.97Å | 0.95Å | |
| O2A | H18 | sing | 0.97Å | 0.95Å | |
| O2G | H19 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 125.1° | 120.3° |
| C2 | N1 | HN1 | 117.4° | 119.9° |
| N1 | C2 | N2 | 116.7° | 119.0° |
| N1 | C2 | N3 | 123.8° | 121.9° |
| C6 | N1 | HN1 | 117.4° | 119.8° |
| N1 | C6 | C5 | 111.5° | 118.4° |
| N1 | C6 | O6 | 120.2° | 120.8° |
| N2 | C2 | N3 | 119.5° | 119.1° |
| C2 | N2 | HN2 | 120.0° | 120.0° |
| C2 | N2 | HN2A | 120.0° | 120.0° |
| C2 | N3 | C4 | 111.9° | 121.2° |
| HN2 | N2 | HN2A | 120.0° | 119.9° |
| N3 | C4 | C5 | 128.7° | 119.7° |
| N3 | C4 | N9 | 125.9° | 134.2° |
| C5 | C4 | N9 | 105.4° | 106.1° |
| C4 | C5 | C6 | 119.0° | 118.6° |
| C4 | C5 | N7 | 110.8° | 107.3° |
| C4 | N9 | C8 | 106.5° | 107.5° |
| C4 | N9 | C1' | 126.2° | 126.3° |
| C6 | C5 | N7 | 130.2° | 134.1° |
| C5 | C6 | O6 | 128.3° | 120.8° |
| C5 | N7 | C8 | 104.2° | 109.4° |
| N7 | C8 | N9 | 113.1° | 109.8° |
| N7 | C8 | H8 | 123.5° | 125.1° |
| N9 | C8 | H8 | 123.4° | 125.1° |
| C8 | N9 | C1' | 127.3° | 126.2° |
| N9 | C1' | C2' | 111.8° | 109.9° |
| N9 | C1' | O4' | 108.1° | 109.9° |
| N9 | C1' | H1' | 108.0° | 109.8° |
| O1A | PA | O2A | 119.0° | 109.4° |
| O1A | PA | O3A | 109.0° | 109.5° |
| O1A | PA | O5' | 106.2° | 109.5° |
| O2A | PA | O3A | 107.9° | 109.5° |
| O2A | PA | O5' | 106.6° | 109.5° |
| PA | O2A | H18 | 109.5° | 114.0° |
| O3A | PA | O5' | 107.6° | 109.5° |
| PA | O3A | PB | 132.0° | 134.0° |
| PA | O5' | C5' | 120.8° | 123.0° |
| O1B | PB | O2B | 119.5° | 109.5° |
| O1B | PB | O3A | 107.2° | 109.5° |
| O1B | PB | C3B | 101.3° | 109.4° |
| PB | O1B | H16 | 109.5° | 114.0° |
| O2B | PB | O3A | 111.2° | 109.5° |
| O2B | PB | C3B | 108.8° | 109.5° |
| O3A | PB | C3B | 107.9° | 109.4° |
| PB | C3B | PG | 111.2° | 109.5° |
| PB | C3B | F3B2 | 115.7° | 109.5° |
| PB | C3B | C3B3 | 106.1° | 109.5° |
| O1G | PG | O2G | 119.7° | 109.5° |
| O1G | PG | C3B | 103.8° | 109.5° |
| O1G | PG | O3G | 108.8° | 109.5° |
| PG | O1G | H17 | 109.5° | 114.0° |
| O2G | PG | C3B | 109.3° | 109.5° |
| O2G | PG | O3G | 108.3° | 109.5° |
| PG | O2G | H19 | 109.5° | 114.0° |
| C3B | PG | O3G | 106.0° | 109.5° |
| PG | C3B | F3B2 | 108.5° | 109.5° |
| PG | C3B | C3B3 | 106.6° | 109.5° |
| C2' | C1' | O4' | 106.8° | 107.3° |
| C2' | C1' | H1' | 109.3° | 109.9° |
| C1' | C2' | C3' | 101.9° | 104.2° |
| C1' | C2' | H2' | 112.1° | 110.5° |
| C1' | C2' | H2'A | 112.1° | 110.5° |
| O4' | C1' | H1' | 112.9° | 110.0° |
| C1' | O4' | C4' | 108.7° | 107.0° |
| C3' | C2' | H2' | 112.1° | 110.5° |
| C3' | C2' | H2'A | 112.1° | 110.5° |
| C2' | C3' | O3' | 111.8° | 110.9° |
| C2' | C3' | C4' | 100.6° | 102.1° |
| C2' | C3' | H3' | 114.3° | 110.9° |
| H2' | C2' | H2'A | 106.7° | 110.5° |
| O3' | C3' | C4' | 110.9° | 110.9° |
| O3' | C3' | H3' | 104.5° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 115.1° | 110.9° |
| C3' | C4' | O4' | 103.7° | 103.4° |
| C3' | C4' | C5' | 115.8° | 110.6° |
| C3' | C4' | H4' | 110.0° | 110.6° |
| F3B2 | C3B | C3B3 | 108.3° | 109.4° |
| C3B | C3B3 | HC3B | 109.5° | 109.5° |
| C3B | C3B3 | HC3A | 109.5° | 109.5° |
| C3B | C3B3 | HC3C | 109.5° | 109.5° |
| HC3B | C3B3 | HC3A | 109.5° | 109.5° |
| HC3B | C3B3 | HC3C | 109.5° | 109.4° |
| HC3A | C3B3 | HC3C | 109.5° | 109.5° |
| O4' | C4' | C5' | 111.5° | 110.6° |
| O4' | C4' | H4' | 114.4° | 110.6° |
| C5' | C4' | H4' | 101.9° | 110.7° |
| C4' | C5' | O5' | 111.0° | 109.5° |
| C4' | C5' | H5' | 109.0° | 109.5° |
| C4' | C5' | H5'A | 109.0° | 109.5° |
| O5' | C5' | H5' | 109.0° | 109.5° |
| O5' | C5' | H5'A | 109.0° | 109.4° |
| H5' | C5' | H5'A | 109.9° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | HN1 | 180.0° | 179.7° |
| N1 | C2 | N2 | N3 | 179.8° | 180.0° |
| N1 | C2 | N2 | HN2 | 179.8° | 0.0° |
| N1 | C2 | N2 | HN2A | 0.2° | 180.0° |
| N1 | C2 | N3 | C4 | 0.7° | 0.0° |
| C2 | N1 | C6 | C5 | 0.9° | 0.0° |
| C2 | N1 | C6 | O6 | 178.5° | 180.0° |
| C6 | N1 | C2 | N2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| N1 | C6 | C5 | C4 | 1.4° | 0.0° |
| N1 | C6 | C5 | O6 | 179.3° | 180.0° |
| N1 | C6 | C5 | N7 | 179.3° | 180.0° |
| HN1 | N1 | C2 | N2 | 0.3° | 0.3° |
| HN1 | N1 | C2 | N3 | 179.9° | 179.7° |
| HN1 | N1 | C6 | C5 | 179.1° | 179.7° |
| HN1 | N1 | C6 | O6 | 1.5° | 0.3° |
| C2 | N2 | HN2 | HN2A | 180.0° | 180.0° |
| N2 | C2 | N3 | C4 | 179.1° | 180.0° |
| N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
| N3 | C2 | N2 | HN2A | 180.0° | 0.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N3 | C4 | N9 | 178.3° | 180.0° |
| N3 | C4 | C5 | N9 | 178.5° | 180.0° |
| N3 | C4 | C5 | C6 | 1.0° | 0.0° |
| N3 | C4 | C5 | N7 | 179.5° | 180.0° |
| N3 | C4 | N9 | C8 | 179.3° | 180.0° |
| N3 | C4 | N9 | C1' | 2.9° | 0.0° |
| C4 | C5 | C6 | N7 | 179.4° | 180.0° |
| C4 | C5 | C6 | O6 | 177.9° | 180.0° |
| C4 | C5 | N7 | C8 | 0.9° | 0.0° |
| C5 | C4 | N9 | C8 | 2.1° | 0.0° |
| C5 | C4 | N9 | C1' | 175.7° | 180.0° |
| N9 | C4 | C5 | C6 | 177.5° | 180.0° |
| N9 | C4 | C5 | N7 | 1.9° | 0.0° |
| C4 | N9 | C8 | N7 | 1.7° | 0.0° |
| C4 | N9 | C8 | C1' | 177.8° | 180.0° |
| C4 | N9 | C8 | H8 | 178.3° | 180.0° |
| C4 | N9 | C1' | C2' | 95.1° | 85.0° |
| C4 | N9 | C1' | O4' | 147.6° | 157.2° |
| C4 | N9 | C1' | H1' | 25.2° | 36.0° |
| C6 | C5 | N7 | C8 | 178.5° | 180.0° |
| N7 | C5 | C6 | O6 | 1.4° | 0.0° |
| C5 | N7 | C8 | N9 | 0.5° | 0.0° |
| C5 | N7 | C8 | H8 | 179.5° | 180.0° |
| N7 | C8 | N9 | H8 | 180.0° | 179.9° |
| N7 | C8 | N9 | C1' | 176.1° | 180.0° |
| C8 | N9 | C1' | C2' | 82.3° | 95.0° |
| C8 | N9 | C1' | O4' | 35.0° | 22.9° |
| C8 | N9 | C1' | H1' | 157.4° | 144.0° |
| H8 | C8 | N9 | C1' | 3.9° | 0.0° |
| N9 | C1' | C2' | O4' | 118.0° | 119.4° |
| N9 | C1' | C2' | H1' | 119.5° | 120.9° |
| N9 | C1' | O4' | H1' | 119.4° | 121.0° |
| N9 | C1' | C2' | C3' | 94.1° | 121.5° |
| N9 | C1' | C2' | H2' | 145.9° | 119.9° |
| N9 | C1' | C2' | H2'A | 25.9° | 2.8° |
| N9 | C1' | O4' | C4' | 122.6° | 146.0° |
| O1A | PA | O2A | O3A | 124.8° | 120.0° |
| O1A | PA | O2A | O5' | 119.9° | 120.0° |
| O1A | PA | O3A | O5' | 114.8° | 120.0° |
| O1A | PA | O3A | PB | 12.0° | 39.9° |
| O1A | PA | O5' | C5' | 53.6° | 55.0° |
| O1A | PA | O2A | H18 | 0.0° | 180.0° |
| O2A | PA | O3A | O5' | 114.7° | 120.0° |
| O2A | PA | O3A | PB | 142.6° | 80.0° |
| O2A | PA | O5' | C5' | 178.6° | 65.0° |
| PA | O3A | PB | O1B | 144.5° | 60.0° |
| PA | O3A | PB | O2B | 12.1° | 60.1° |
| PA | O3A | PB | C3B | 107.1° | 179.9° |
| O3A | PA | O5' | C5' | 63.0° | 175.0° |
| O3A | PA | O2A | H18 | 124.7° | 60.0° |
| O5' | PA | O3A | PB | 102.8° | 160.0° |
| PA | O5' | C5' | C4' | 127.9° | 179.9° |
| PA | O5' | C5' | H5' | 112.0° | 59.9° |
| PA | O5' | C5' | H5'A | 7.9° | 60.0° |
| O5' | PA | O2A | H18 | 119.9° | 60.0° |
| O1B | PB | O2B | O3A | 125.8° | 120.1° |
| O1B | PB | O2B | C3B | 115.5° | 120.0° |
| O1B | PB | O3A | C3B | 108.4° | 120.0° |
| O1B | PB | C3B | PG | 151.0° | 65.0° |
| O1B | PB | C3B | F3B2 | 26.7° | 55.0° |
| O1B | PB | C3B | C3B3 | 93.5° | 175.0° |
| O2B | PB | O3A | C3B | 119.2° | 120.0° |
| O2B | PB | C3B | PG | 24.2° | 55.0° |
| O2B | PB | C3B | F3B2 | 100.1° | 175.1° |
| O2B | PB | C3B | C3B3 | 139.8° | 65.0° |
| O2B | PB | O1B | H16 | 0.0° | 179.9° |
| O3A | PB | C3B | PG | 96.6° | 175.0° |
| O3A | PB | C3B | F3B2 | 139.1° | 65.0° |
| O3A | PB | C3B | C3B3 | 19.0° | 55.0° |
| O3A | PB | O1B | H16 | 127.7° | 60.0° |
| PB | C3B | PG | O1G | 33.1° | 65.0° |
| PB | C3B | PG | O2G | 161.9° | 175.0° |
| PB | C3B | PG | F3B2 | 128.3° | 120.0° |
| PB | C3B | PG | C3B3 | 115.2° | 120.0° |
| PB | C3B | PG | O3G | 81.5° | 55.0° |
| PB | C3B | F3B2 | C3B3 | 118.9° | 120.0° |
| PB | C3B | C3B3 | HC3B | 180.0° | 60.0° |
| PB | C3B | C3B3 | HC3A | 60.0° | 180.0° |
| PB | C3B | C3B3 | HC3C | 60.0° | 60.0° |
| C3B | PB | O1B | H16 | 119.3° | 59.9° |
| O1G | PG | O2G | C3B | 119.4° | 120.0° |
| O1G | PG | O2G | O3G | 125.5° | 120.0° |
| O1G | PG | C3B | O3G | 114.6° | 120.0° |
| O1G | PG | C3B | F3B2 | 161.4° | 55.0° |
| O1G | PG | C3B | C3B3 | 82.1° | 175.0° |
| O1G | PG | O2G | H19 | 125.5° | 60.0° |
| O2G | PG | C3B | O3G | 116.6° | 120.0° |
| O2G | PG | C3B | F3B2 | 69.8° | 65.0° |
| O2G | PG | C3B | C3B3 | 46.7° | 55.0° |
| O2G | PG | O1G | H17 | 132.3° | 60.0° |
| PG | C3B | F3B2 | C3B3 | 115.4° | 120.0° |
| PG | C3B | C3B3 | HC3B | 61.4° | 60.0° |
| PG | C3B | C3B3 | HC3A | 178.6° | 60.0° |
| PG | C3B | C3B3 | HC3C | 58.6° | 179.9° |
| C3B | PG | O1G | H17 | 10.1° | 60.0° |
| C3B | PG | O2G | H19 | 115.1° | 180.0° |
| O3G | PG | C3B | F3B2 | 46.8° | 175.0° |
| O3G | PG | C3B | C3B3 | 163.2° | 65.0° |
| O3G | PG | O1G | H17 | 102.5° | 180.0° |
| O3G | PG | O2G | H19 | 0.0° | 60.0° |
| C2' | C1' | O4' | H1' | 120.2° | 119.6° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'A | 120.0° | 118.7° |
| C1' | C2' | H2' | H2'A | 123.1° | 122.6° |
| C1' | C2' | C3' | O3' | 156.9° | 139.1° |
| C1' | C2' | C3' | C4' | 39.1° | 20.9° |
| C1' | C2' | C3' | H3' | 84.7° | 97.4° |
| C2' | C1' | O4' | C4' | 2.2° | 26.6° |
| O4' | C1' | C2' | C3' | 23.9° | 2.1° |
| O4' | C1' | C2' | H2' | 96.1° | 120.7° |
| O4' | C1' | C2' | H2'A | 143.9° | 116.6° |
| C1' | O4' | C4' | C3' | 27.6° | 40.1° |
| C1' | O4' | C4' | C5' | 152.9° | 158.6° |
| C1' | O4' | C4' | H4' | 92.2° | 78.4° |
| H1' | C1' | C2' | C3' | 146.4° | 117.6° |
| H1' | C1' | C2' | H2' | 26.4° | 1.1° |
| H1' | C1' | C2' | H2'A | 93.6° | 123.7° |
| H1' | C1' | O4' | C4' | 118.0° | 93.0° |
| C3' | C2' | H2' | H2'A | 123.1° | 122.6° |
| C2' | C3' | O3' | C4' | 111.4° | 112.8° |
| C2' | C3' | O3' | H3' | 124.1° | 123.6° |
| C2' | C3' | C4' | H3' | 123.3° | 118.2° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | O4' | 41.5° | 37.0° |
| C2' | C3' | C4' | C5' | 164.0° | 155.5° |
| C2' | C3' | C4' | H4' | 81.3° | 81.5° |
| H2' | C2' | C3' | O3' | 36.8° | 20.4° |
| H2' | C2' | C3' | C4' | 80.9° | 97.8° |
| H2' | C2' | C3' | H3' | 155.2° | 144.0° |
| H2'A | C2' | C3' | O3' | 83.1° | 102.2° |
| H2'A | C2' | C3' | C4' | 159.1° | 139.6° |
| H2'A | C2' | C3' | H3' | 35.3° | 21.3° |
| O3' | C3' | C4' | H3' | 118.3° | 123.6° |
| O3' | C3' | C4' | O4' | 159.9° | 155.2° |
| O3' | C3' | C4' | C5' | 77.7° | 86.3° |
| O3' | C3' | C4' | H4' | 37.1° | 36.8° |
| C4' | C3' | O3' | HO3' | 68.6° | 174.2° |
| C3' | C4' | O4' | C5' | 125.3° | 118.5° |
| C3' | C4' | O4' | H4' | 119.8° | 118.5° |
| C3' | C4' | C5' | H4' | 119.3° | 123.0° |
| C3' | C4' | C5' | O5' | 60.0° | 175.0° |
| C3' | C4' | C5' | H5' | 180.0° | 55.0° |
| C3' | C4' | C5' | H5'A | 60.0° | 65.0° |
| H3' | C3' | O3' | HO3' | 56.0° | 62.1° |
| H3' | C3' | C4' | O4' | 81.8° | 81.2° |
| H3' | C3' | C4' | C5' | 40.7° | 37.3° |
| H3' | C3' | C4' | H4' | 155.5° | 160.3° |
| F3B2 | C3B | C3B3 | HC3B | 55.2° | 180.0° |
| F3B2 | C3B | C3B3 | HC3A | 64.8° | 60.0° |
| F3B2 | C3B | C3B3 | HC3C | 175.1° | 60.0° |
| C3B | C3B3 | HC3B | HC3A | 120.0° | 120.0° |
| C3B | C3B3 | HC3B | HC3C | 120.0° | 120.0° |
| C3B | C3B3 | HC3A | HC3C | 120.0° | 120.1° |
| HC3B | C3B3 | HC3A | HC3C | 120.0° | 119.9° |
| O4' | C4' | C5' | H4' | 122.5° | 123.0° |
| O4' | C4' | C5' | O5' | 58.3° | 70.9° |
| O4' | C4' | C5' | H5' | 61.8° | 169.0° |
| O4' | C4' | C5' | H5'A | 178.3° | 49.1° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.1° |
| C4' | C5' | H5' | H5'A | 119.4° | 120.0° |
| H4' | C4' | C5' | O5' | 179.3° | 52.0° |
| H4' | C4' | C5' | H5' | 60.7° | 68.0° |
| H4' | C4' | C5' | H5'A | 59.3° | 172.0° |
| O5' | C5' | H5' | H5'A | 119.4° | 119.9° |
