GFH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PA | O3A | sing | 1.61Å | 1.52Å | |
| PA | O2A | doub | 1.48Å | 1.48Å | |
| PA | O1A | sing | 1.61Å | 1.48Å | |
| O1A | HO1A | sing | 0.97Å | 0.95Å | |
| O3A | PB | sing | 1.61Å | 1.51Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| PB | O1B | doub | 1.48Å | 1.48Å | |
| PB | O2B | sing | 1.61Å | 1.48Å | |
| PB | C3B | sing | 1.82Å | 1.85Å | |
| O2B | HO2B | sing | 0.97Å | 0.95Å | |
| C3B | F3B | sing | 1.40Å | 1.40Å | |
| C3B | PG | sing | 1.82Å | 1.84Å | |
| C3B | H3B | sing | 1.09Å | 1.10Å | |
| PG | O3G | doub | 1.48Å | 1.48Å | |
| PG | O1G | sing | 1.61Å | 1.49Å | |
| PG | O2G | sing | 1.61Å | 1.49Å | |
| O1G | HO1G | sing | 0.97Å | 0.95Å | |
| O2G | HO2G | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| C4 | N3 | sing | 1.34Å | 1.35Å | |
| C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
| N3 | C2 | doub | 1.31Å | 1.32Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N1 | sing | 1.36Å | 1.38Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| N2 | HN22 | sing | 0.97Å | 1.00Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| C6 | C5 | sing | 1.41Å | 1.41Å | |
| C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | PA | O3A | 105.7° | 109.4° |
| O5' | PA | O2A | 107.3° | 109.5° |
| O5' | PA | O1A | 105.8° | 109.5° |
| PA | O5' | C5' | 120.6° | 122.9° |
| O3A | PA | O2A | 109.0° | 109.5° |
| O3A | PA | O1A | 109.6° | 109.5° |
| PA | O3A | PB | 131.7° | 134.0° |
| O2A | PA | O1A | 118.7° | 109.5° |
| PA | O1A | HO1A | 109.5° | 114.0° |
| O3A | PB | O1B | 109.3° | 109.5° |
| O3A | PB | O2B | 112.1° | 109.5° |
| O3A | PB | C3B | 101.5° | 109.5° |
| O5' | C5' | C4' | 111.1° | 109.4° |
| O5' | C5' | H5'1 | 108.9° | 109.5° |
| O5' | C5' | H5'2 | 108.6° | 109.5° |
| O1B | PB | O2B | 119.2° | 109.5° |
| O1B | PB | C3B | 103.7° | 109.5° |
| O2B | PB | C3B | 109.2° | 109.4° |
| PB | O2B | HO2B | 109.5° | 114.1° |
| PB | C3B | F3B | 112.9° | 109.4° |
| PB | C3B | PG | 115.3° | 109.5° |
| PB | C3B | H3B | 102.7° | 109.5° |
| F3B | C3B | PG | 109.7° | 109.5° |
| F3B | C3B | H3B | 109.1° | 109.4° |
| PG | C3B | H3B | 106.5° | 109.5° |
| C3B | PG | O3G | 105.0° | 109.4° |
| C3B | PG | O1G | 105.7° | 109.5° |
| C3B | PG | O2G | 108.1° | 109.5° |
| O3G | PG | O1G | 109.0° | 109.5° |
| O3G | PG | O2G | 108.7° | 109.5° |
| O1G | PG | O2G | 119.4° | 109.5° |
| PG | O1G | HO1G | 109.5° | 114.0° |
| PG | O2G | HO2G | 109.5° | 114.0° |
| C4' | C5' | H5'1 | 108.9° | 109.5° |
| C4' | C5' | H5'2 | 108.5° | 109.5° |
| C5' | C4' | C3' | 114.9° | 110.4° |
| C5' | C4' | O4' | 111.0° | 110.4° |
| C5' | C4' | H4' | 103.2° | 110.4° |
| H5'1 | C5' | H5'2 | 110.8° | 109.5° |
| C3' | C4' | O4' | 104.6° | 104.8° |
| C3' | C4' | H4' | 109.7° | 110.3° |
| C4' | C3' | C2' | 101.6° | 104.1° |
| C4' | C3' | O3' | 110.2° | 110.5° |
| C4' | C3' | H3' | 114.8° | 110.5° |
| O4' | C4' | H4' | 113.8° | 110.5° |
| C4' | O4' | C1' | 109.4° | 105.3° |
| O4' | C1' | C2' | 106.9° | 104.8° |
| O4' | C1' | N9 | 108.5° | 110.4° |
| O4' | C1' | H1' | 113.3° | 110.4° |
| C2' | C1' | N9 | 113.5° | 110.4° |
| C2' | C1' | H1' | 108.2° | 110.4° |
| C1' | C2' | C3' | 103.0° | 104.1° |
| C1' | C2' | H2'1 | 111.7° | 110.5° |
| C1' | C2' | H2'2 | 113.1° | 110.5° |
| N9 | C1' | H1' | 106.6° | 110.4° |
| C1' | N9 | C4 | 126.1° | 126.2° |
| C1' | N9 | C8 | 127.7° | 126.3° |
| C4 | N9 | C8 | 106.2° | 107.4° |
| N9 | C4 | N3 | 125.9° | 134.2° |
| N9 | C4 | C5 | 105.4° | 106.1° |
| N9 | C8 | N7 | 113.1° | 109.9° |
| N9 | C8 | H8 | 123.4° | 125.0° |
| N3 | C4 | C5 | 128.7° | 119.7° |
| C4 | N3 | C2 | 112.1° | 121.1° |
| C4 | C5 | C6 | 118.9° | 118.6° |
| C4 | C5 | N7 | 110.8° | 107.2° |
| N3 | C2 | N2 | 119.4° | 119.0° |
| N3 | C2 | N1 | 123.7° | 121.9° |
| N2 | C2 | N1 | 116.9° | 119.1° |
| C2 | N2 | HN21 | 109.5° | 120.0° |
| C2 | N2 | HN22 | 109.5° | 120.0° |
| C2 | N1 | C6 | 125.0° | 120.3° |
| C2 | N1 | HN1 | 117.5° | 119.8° |
| HN21 | N2 | HN22 | 109.5° | 120.0° |
| C6 | N1 | HN1 | 117.5° | 119.8° |
| N1 | C6 | O6 | 120.0° | 120.8° |
| N1 | C6 | C5 | 111.6° | 118.3° |
| O6 | C6 | C5 | 128.4° | 120.8° |
| C6 | C5 | N7 | 130.3° | 134.1° |
| C5 | N7 | C8 | 104.4° | 109.3° |
| N7 | C8 | H8 | 123.4° | 125.1° |
| C3' | C2' | H2'1 | 111.7° | 110.5° |
| C3' | C2' | H2'2 | 113.0° | 110.5° |
| C2' | C3' | O3' | 111.7° | 110.5° |
| C2' | C3' | H3' | 113.3° | 110.5° |
| H2'1 | C2' | H2'2 | 104.6° | 110.6° |
| O3' | C3' | H3' | 105.3° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 113.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | PA | O3A | O2A | 115.0° | 120.0° |
| O5' | PA | O3A | O1A | 113.6° | 120.0° |
| O5' | PA | O2A | O1A | 119.7° | 120.0° |
| O5' | PA | O1A | HO1A | 127.6° | 60.0° |
| O5' | PA | O3A | PB | 101.4° | 165.0° |
| PA | O5' | C5' | C4' | 129.7° | 180.0° |
| PA | O5' | C5' | H5'1 | 9.7° | 60.0° |
| PA | O5' | C5' | H5'2 | 111.0° | 60.0° |
| O3A | PA | O2A | O1A | 126.3° | 120.0° |
| O3A | PA | O1A | HO1A | 118.9° | 60.0° |
| O3A | PA | O5' | C5' | 62.5° | 175.0° |
| PA | O3A | PB | O1B | 144.2° | 60.0° |
| PA | O3A | PB | O2B | 9.7° | 60.1° |
| PA | O3A | PB | C3B | 106.6° | 180.0° |
| O2A | PA | O1A | HO1A | 7.2° | 180.0° |
| O2A | PA | O3A | PB | 143.5° | 45.0° |
| O2A | PA | O5' | C5' | 178.8° | 55.0° |
| O1A | PA | O3A | PB | 12.1° | 74.9° |
| O1A | PA | O5' | C5' | 53.6° | 65.0° |
| O3A | PB | O1B | O2B | 130.8° | 120.0° |
| O3A | PB | O1B | C3B | 107.6° | 120.0° |
| O3A | PB | O2B | C3B | 111.6° | 120.0° |
| O3A | PB | O2B | HO2B | 62.9° | 60.0° |
| O3A | PB | C3B | F3B | 139.7° | 60.0° |
| O3A | PB | C3B | PG | 93.0° | 180.0° |
| O3A | PB | C3B | H3B | 22.3° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 119.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.4° | 120.0° |
| O5' | C5' | C4' | C3' | 63.4° | 175.0° |
| O5' | C5' | C4' | O4' | 55.0° | 69.6° |
| O5' | C5' | C4' | H4' | 177.2° | 52.8° |
| O1B | PB | O2B | C3B | 118.8° | 120.0° |
| O1B | PB | O2B | HO2B | 167.6° | 180.0° |
| O1B | PB | C3B | F3B | 26.3° | 60.0° |
| O1B | PB | C3B | PG | 153.5° | 60.0° |
| O1B | PB | C3B | H3B | 91.1° | 180.0° |
| O2B | PB | C3B | F3B | 101.8° | 180.0° |
| O2B | PB | C3B | PG | 25.5° | 60.0° |
| O2B | PB | C3B | H3B | 140.8° | 60.0° |
| C3B | PB | O2B | HO2B | 48.7° | 60.0° |
| PB | C3B | F3B | PG | 130.1° | 120.0° |
| PB | C3B | F3B | H3B | 113.6° | 120.0° |
| PB | C3B | PG | H3B | 113.2° | 120.1° |
| PB | C3B | PG | O3G | 87.0° | 60.0° |
| PB | C3B | PG | O1G | 28.2° | 60.0° |
| PB | C3B | PG | O2G | 157.2° | 180.0° |
| F3B | C3B | PG | H3B | 118.0° | 120.0° |
| F3B | C3B | PG | O3G | 41.9° | 180.0° |
| F3B | C3B | PG | O1G | 157.0° | 60.0° |
| F3B | C3B | PG | O2G | 74.0° | 60.0° |
| C3B | PG | O3G | O1G | 112.9° | 120.0° |
| C3B | PG | O3G | O2G | 115.5° | 120.0° |
| C3B | PG | O1G | O2G | 122.0° | 120.0° |
| C3B | PG | O1G | HO1G | 166.5° | 60.1° |
| C3B | PG | O2G | HO2G | 8.4° | 180.0° |
| H3B | C3B | PG | O3G | 159.9° | 60.1° |
| H3B | C3B | PG | O1G | 85.0° | 180.0° |
| H3B | C3B | PG | O2G | 44.0° | 59.9° |
| O3G | PG | O1G | O2G | 125.7° | 120.0° |
| O3G | PG | O1G | HO1G | 81.1° | 180.0° |
| O3G | PG | O2G | HO2G | 121.8° | 60.1° |
| O1G | PG | O2G | HO2G | 112.4° | 60.0° |
| O2G | PG | O1G | HO1G | 44.5° | 60.0° |
| C4' | C5' | H5'1 | H5'2 | 119.3° | 120.0° |
| C5' | C4' | C3' | O4' | 121.9° | 118.9° |
| C5' | C4' | C3' | H4' | 115.7° | 122.2° |
| C5' | C4' | O4' | H4' | 115.8° | 122.4° |
| C5' | C4' | O4' | C1' | 149.9° | 159.3° |
| C5' | C4' | C3' | C2' | 159.1° | 142.8° |
| C5' | C4' | C3' | O3' | 82.3° | 98.5° |
| C5' | C4' | C3' | H3' | 36.4° | 24.2° |
| H5'1 | C5' | C4' | C3' | 56.6° | 65.0° |
| H5'1 | C5' | C4' | O4' | 175.0° | 50.4° |
| H5'1 | C5' | C4' | H4' | 62.8° | 172.8° |
| H5'2 | C5' | C4' | C3' | 177.3° | 55.0° |
| H5'2 | C5' | C4' | O4' | 64.3° | 170.4° |
| H5'2 | C5' | C4' | H4' | 57.9° | 67.2° |
| C3' | C4' | O4' | H4' | 119.7° | 118.8° |
| C3' | C4' | O4' | C1' | 25.4° | 40.5° |
| C4' | C3' | C2' | C1' | 34.6° | 0.0° |
| C4' | C3' | C2' | O3' | 117.5° | 118.7° |
| C4' | C3' | C2' | H3' | 123.8° | 118.6° |
| C4' | C3' | C2' | H2'1 | 85.4° | 118.7° |
| C4' | C3' | C2' | H2'2 | 157.0° | 118.6° |
| C4' | C3' | O3' | H3' | 124.4° | 122.6° |
| C4' | C3' | O3' | HO3' | 104.5° | 180.0° |
| C4' | O4' | C1' | C2' | 2.9° | 40.5° |
| C4' | O4' | C1' | N9 | 125.7° | 159.3° |
| C4' | O4' | C1' | H1' | 116.2° | 78.3° |
| O4' | C4' | C3' | C2' | 37.2° | 24.0° |
| O4' | C4' | C3' | O3' | 155.8° | 142.6° |
| O4' | C4' | C3' | H3' | 85.5° | 94.7° |
| H4' | C4' | O4' | C1' | 94.3° | 78.3° |
| H4' | C4' | C3' | C2' | 85.1° | 95.0° |
| H4' | C4' | C3' | O3' | 33.4° | 23.7° |
| H4' | C4' | C3' | H3' | 152.1° | 146.4° |
| O4' | C1' | C2' | N9 | 119.6° | 118.8° |
| O4' | C1' | C2' | H1' | 122.3° | 118.8° |
| O4' | C1' | N9 | H1' | 122.3° | 122.3° |
| O4' | C1' | N9 | C4 | 147.6° | 156.5° |
| O4' | C1' | N9 | C8 | 33.9° | 23.2° |
| O4' | C1' | C2' | C3' | 20.6° | 24.0° |
| O4' | C1' | C2' | H2'1 | 99.4° | 142.6° |
| O4' | C1' | C2' | H2'2 | 143.0° | 94.6° |
| C2' | C1' | N9 | H1' | 119.0° | 122.3° |
| C2' | C1' | N9 | C4 | 93.8° | 88.2° |
| C2' | C1' | N9 | C8 | 84.8° | 92.2° |
| C1' | C2' | C3' | H2'1 | 120.0° | 118.7° |
| C1' | C2' | C3' | H2'2 | 122.4° | 118.6° |
| C1' | C2' | H2'1 | H2'2 | 122.6° | 122.7° |
| C1' | C2' | C3' | O3' | 152.1° | 118.6° |
| C1' | C2' | C3' | H3' | 89.1° | 118.6° |
| C1' | N9 | C4 | C8 | 178.8° | 179.7° |
| C1' | N9 | C4 | N3 | 1.8° | 0.1° |
| C1' | N9 | C4 | C5 | 177.7° | 180.0° |
| C1' | N9 | C8 | N7 | 178.0° | 179.8° |
| C1' | N9 | C8 | H8 | 2.0° | 0.0° |
| N9 | C1' | C2' | C3' | 98.9° | 142.8° |
| N9 | C1' | C2' | H2'1 | 141.1° | 98.6° |
| N9 | C1' | C2' | H2'2 | 23.4° | 24.2° |
| H1' | C1' | N9 | C4 | 25.3° | 34.1° |
| H1' | C1' | N9 | C8 | 156.2° | 145.5° |
| H1' | C1' | C2' | C3' | 143.0° | 94.9° |
| H1' | C1' | C2' | H2'1 | 23.0° | 23.8° |
| H1' | C1' | C2' | H2'2 | 94.7° | 146.6° |
| N9 | C4 | N3 | C5 | 179.4° | 179.8° |
| N9 | C4 | N3 | C2 | 179.9° | 179.9° |
| N9 | C4 | C5 | C6 | 178.4° | 180.0° |
| N9 | C4 | C5 | N7 | 1.2° | 0.1° |
| C4 | N9 | C8 | N7 | 0.7° | 0.4° |
| C4 | N9 | C8 | H8 | 179.3° | 179.7° |
| C8 | N9 | C4 | N3 | 179.4° | 179.6° |
| C8 | N9 | C4 | C5 | 1.1° | 0.2° |
| N9 | C8 | N7 | C5 | 0.0° | 0.5° |
| N9 | C8 | N7 | H8 | 180.0° | 179.8° |
| C4 | N3 | C2 | N2 | 177.7° | 180.0° |
| C4 | N3 | C2 | N1 | 1.6° | 0.1° |
| N3 | C4 | C5 | C6 | 1.1° | 0.2° |
| N3 | C4 | C5 | N7 | 179.3° | 179.9° |
| C5 | C4 | N3 | C2 | 0.7° | 0.1° |
| C4 | C5 | C6 | N1 | 1.7° | 0.2° |
| C4 | C5 | C6 | O6 | 177.3° | 180.0° |
| C4 | C5 | C6 | N7 | 179.5° | 179.9° |
| C4 | C5 | N7 | C8 | 0.8° | 0.3° |
| N3 | C2 | N2 | N1 | 179.4° | 179.9° |
| N3 | C2 | N2 | HN21 | 96.8° | 0.0° |
| N3 | C2 | N2 | HN22 | 143.2° | 180.0° |
| N3 | C2 | N1 | C6 | 0.8° | 0.1° |
| N3 | C2 | N1 | HN1 | 179.2° | 180.0° |
| C2 | N2 | HN21 | HN22 | 120.0° | 180.0° |
| N2 | C2 | N1 | C6 | 178.5° | 179.9° |
| N2 | C2 | N1 | HN1 | 1.4° | 0.1° |
| N1 | C2 | N2 | HN21 | 82.6° | 179.9° |
| N1 | C2 | N2 | HN22 | 37.4° | 0.1° |
| C2 | N1 | C6 | HN1 | 180.0° | 179.9° |
| C2 | N1 | C6 | O6 | 178.1° | 180.0° |
| C2 | N1 | C6 | C5 | 1.0° | 0.2° |
| N1 | C6 | O6 | C5 | 178.9° | 179.8° |
| N1 | C6 | C5 | N7 | 178.7° | 179.9° |
| HN1 | N1 | C6 | O6 | 1.9° | 0.1° |
| HN1 | N1 | C6 | C5 | 179.0° | 180.0° |
| O6 | C6 | C5 | N7 | 2.3° | 0.1° |
| C6 | C5 | N7 | C8 | 178.8° | 179.8° |
| C5 | N7 | C8 | H8 | 180.0° | 179.7° |
| C3' | C2' | H2'1 | H2'2 | 122.6° | 122.6° |
| C2' | C3' | O3' | H3' | 123.5° | 122.7° |
| C2' | C3' | O3' | HO3' | 7.7° | 65.4° |
| H2'1 | C2' | C3' | O3' | 32.1° | 0.0° |
| H2'1 | C2' | C3' | H3' | 150.9° | 122.7° |
| H2'2 | C2' | C3' | O3' | 85.5° | 122.7° |
| H2'2 | C2' | C3' | H3' | 33.2° | 0.0° |
| H3' | C3' | O3' | HO3' | 131.1° | 57.3° |
