GFF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P1 | O5' | sing | 1.62Å | 1.60Å | |
| P1 | O1A | sing | 1.62Å | 1.48Å | |
| P1 | O2A | doub | 1.50Å | 1.49Å | |
| P1 | O3A | sing | 1.61Å | 1.51Å | |
| O1A | H1A | sing | 0.98Å | 0.95Å | |
| O3A | P2 | sing | 1.61Å | 1.51Å | |
| O5' | C5' | sing | 1.42Å | 1.43Å | |
| P2 | O1B | sing | 1.62Å | 1.49Å | |
| P2 | O2B | doub | 1.50Å | 1.48Å | |
| P2 | C3B | sing | 1.74Å | 1.87Å | |
| O1B | H1B | sing | 0.98Å | 0.95Å | |
| C3B | F1B | sing | 1.35Å | 1.37Å | |
| C3B | F2B | sing | 1.35Å | 1.37Å | |
| C3B | P3 | sing | 1.74Å | 1.88Å | |
| P3 | O1G | sing | 1.62Å | 1.49Å | |
| P3 | O2G | doub | 1.50Å | 1.49Å | |
| P3 | O3G | sing | 1.62Å | 1.48Å | |
| O1G | H1G | sing | 0.98Å | 0.95Å | |
| O3G | H3G | sing | 0.98Å | 0.95Å | |
| C5' | C4' | sing | 1.52Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | H4' | sing | 1.10Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| C1' | C2' | sing | 1.52Å | 1.53Å | |
| C1' | H1' | sing | 1.10Å | 1.10Å | |
| N9 | C8 | sing | 1.38Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C4 | C5 | doub | 1.37Å | 1.38Å | Aromatic |
| C4 | N3 | sing | 1.35Å | 1.35Å | |
| N3 | C2 | doub | 1.32Å | 1.32Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N1 | sing | 1.41Å | 1.38Å | |
| N2 | HN21 | sing | 0.99Å | 1.00Å | |
| N2 | HN22 | sing | 0.99Å | 1.00Å | |
| N1 | C6 | sing | 1.40Å | 1.39Å | |
| N1 | HN1 | sing | 1.02Å | 1.00Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| C6 | C5 | sing | 1.44Å | 1.41Å | |
| C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
| N7 | C8 | doub | 1.32Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2' | C3' | sing | 1.51Å | 1.52Å | |
| C2' | H2'1 | sing | 1.10Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P1 | O1A | 106.5° | 103.5° |
| O5' | P1 | O2A | 107.1° | 115.2° |
| O5' | P1 | O3A | 106.4° | 103.1° |
| P1 | O5' | C5' | 120.6° | 118.4° |
| O1A | P1 | O2A | 119.0° | 114.8° |
| O1A | P1 | O3A | 107.3° | 103.0° |
| P1 | O1A | H1A | 109.5° | 119.0° |
| O2A | P1 | O3A | 109.9° | 115.5° |
| P1 | O3A | P2 | 130.5° | 132.1° |
| O3A | P2 | O1B | 106.4° | 101.0° |
| O3A | P2 | O2B | 113.5° | 115.3° |
| O3A | P2 | C3B | 105.8° | 104.7° |
| O5' | C5' | C4' | 110.6° | 109.0° |
| O5' | C5' | H5'1 | 109.1° | 108.8° |
| O5' | C5' | H5'2 | 108.9° | 108.8° |
| O1B | P2 | O2B | 119.3° | 114.7° |
| O1B | P2 | C3B | 103.9° | 103.8° |
| P2 | O1B | H1B | 109.5° | 118.9° |
| O2B | P2 | C3B | 106.6° | 115.6° |
| P2 | C3B | F1B | 107.5° | 101.7° |
| P2 | C3B | F2B | 107.5° | 101.4° |
| P2 | C3B | P3 | 114.3° | 139.8° |
| F1B | C3B | F2B | 108.7° | 107.1° |
| F1B | C3B | P3 | 110.2° | 101.7° |
| F2B | C3B | P3 | 108.5° | 102.2° |
| C3B | P3 | O1G | 108.2° | 103.6° |
| C3B | P3 | O2G | 107.2° | 114.7° |
| C3B | P3 | O3G | 104.3° | 104.5° |
| O1G | P3 | O2G | 119.3° | 114.5° |
| O1G | P3 | O3G | 109.0° | 103.2° |
| P3 | O1G | H1G | 109.5° | 118.9° |
| O2G | P3 | O3G | 107.9° | 114.8° |
| P3 | O3G | H3G | 109.5° | 118.9° |
| C4' | C5' | H5'1 | 109.1° | 110.5° |
| C4' | C5' | H5'2 | 108.9° | 110.5° |
| C5' | C4' | C3' | 115.2° | 112.7° |
| C5' | C4' | O4' | 109.7° | 108.0° |
| C5' | C4' | H4' | 103.8° | 109.4° |
| H5'1 | C5' | H5'2 | 110.3° | 109.1° |
| C3' | C4' | O4' | 104.1° | 106.8° |
| C3' | C4' | H4' | 109.5° | 112.0° |
| C4' | C3' | C2' | 101.3° | 103.2° |
| C4' | C3' | O3' | 110.6° | 109.6° |
| C4' | C3' | H3' | 114.8° | 114.0° |
| O4' | C4' | H4' | 115.0° | 107.7° |
| C4' | O4' | C1' | 109.1° | 108.7° |
| O4' | C1' | N9 | 108.4° | 110.0° |
| O4' | C1' | C2' | 107.0° | 106.7° |
| O4' | C1' | H1' | 112.8° | 108.1° |
| N9 | C1' | C2' | 112.6° | 114.3° |
| N9 | C1' | H1' | 107.4° | 105.9° |
| C1' | N9 | C8 | 127.9° | 126.1° |
| C1' | N9 | C4 | 125.7° | 127.3° |
| C2' | C1' | H1' | 108.7° | 111.7° |
| C1' | C2' | C3' | 102.4° | 101.6° |
| C1' | C2' | H2'1 | 111.9° | 110.5° |
| C1' | C2' | H2'2 | 113.4° | 111.7° |
| C8 | N9 | C4 | 106.4° | 106.6° |
| N9 | C8 | N7 | 113.1° | 112.5° |
| N9 | C8 | H8 | 123.4° | 122.0° |
| N9 | C4 | C5 | 105.4° | 104.9° |
| N9 | C4 | N3 | 125.7° | 126.0° |
| C5 | C4 | N3 | 128.9° | 129.1° |
| C4 | C5 | C6 | 118.8° | 119.2° |
| C4 | C5 | N7 | 110.8° | 112.1° |
| C4 | N3 | C2 | 112.0° | 113.0° |
| N3 | C2 | N2 | 119.4° | 122.0° |
| N3 | C2 | N1 | 123.7° | 122.6° |
| N2 | C2 | N1 | 116.9° | 115.4° |
| C2 | N2 | HN21 | 109.5° | 118.3° |
| C2 | N2 | HN22 | 109.5° | 118.3° |
| C2 | N1 | C6 | 125.1° | 125.3° |
| C2 | N1 | HN1 | 117.5° | 117.4° |
| HN21 | N2 | HN22 | 109.4° | 123.5° |
| C6 | N1 | HN1 | 117.5° | 117.4° |
| N1 | C6 | O6 | 120.0° | 125.4° |
| N1 | C6 | C5 | 111.5° | 110.8° |
| O6 | C6 | C5 | 128.4° | 123.8° |
| C6 | C5 | N7 | 130.4° | 128.7° |
| C5 | N7 | C8 | 104.2° | 103.9° |
| N7 | C8 | H8 | 123.4° | 125.5° |
| C3' | C2' | H2'1 | 111.9° | 110.0° |
| C3' | C2' | H2'2 | 113.4° | 114.2° |
| C2' | C3' | O3' | 111.8° | 108.4° |
| C2' | C3' | H3' | 113.7° | 113.7° |
| H2'1 | C2' | H2'2 | 104.2° | 108.7° |
| O3' | C3' | H3' | 104.9° | 107.8° |
| C3' | O3' | H1 | 109.5° | 106.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P1 | O1A | O2A | 121.0° | 126.4° |
| O5' | P1 | O1A | O3A | 113.6° | 107.2° |
| O5' | P1 | O2A | O3A | 115.2° | 120.2° |
| O5' | P1 | O1A | H1A | 126.3° | 174.9° |
| O5' | P1 | O3A | P2 | 106.1° | 173.4° |
| P1 | O5' | C5' | C4' | 124.5° | 180.0° |
| P1 | O5' | C5' | H5'1 | 4.5° | 59.4° |
| P1 | O5' | C5' | H5'2 | 116.0° | 59.4° |
| O1A | P1 | O2A | O3A | 124.2° | 119.7° |
| O1A | P1 | O3A | P2 | 7.6° | 65.9° |
| O1A | P1 | O5' | C5' | 51.9° | 53.9° |
| O2A | P1 | O1A | H1A | 5.3° | 48.5° |
| O2A | P1 | O3A | P2 | 138.3° | 60.0° |
| O2A | P1 | O5' | C5' | 179.8° | 180.0° |
| O3A | P1 | O1A | H1A | 120.1° | 77.9° |
| O3A | P1 | O5' | C5' | 62.4° | 53.2° |
| P1 | O3A | P2 | O1B | 147.8° | 72.4° |
| P1 | O3A | P2 | O2B | 14.6° | 51.8° |
| P1 | O3A | P2 | C3B | 102.0° | 180.0° |
| O3A | P2 | O1B | O2B | 130.0° | 124.6° |
| O3A | P2 | O1B | C3B | 111.5° | 108.3° |
| O3A | P2 | O2B | C3B | 116.2° | 122.5° |
| O3A | P2 | O1B | H1B | 47.2° | 120.4° |
| O3A | P2 | C3B | F1B | 140.1° | 172.0° |
| O3A | P2 | C3B | F2B | 23.2° | 77.5° |
| O3A | P2 | C3B | P3 | 97.2° | 47.4° |
| O5' | C5' | C4' | H5'1 | 120.0° | 119.5° |
| O5' | C5' | C4' | H5'2 | 119.6° | 119.5° |
| O5' | C5' | H5'1 | H5'2 | 119.6° | 118.6° |
| O5' | C5' | C4' | C3' | 59.4° | 179.6° |
| O5' | C5' | C4' | O4' | 57.6° | 61.8° |
| O5' | C5' | C4' | H4' | 179.1° | 55.2° |
| O1B | P2 | O2B | C3B | 117.1° | 120.8° |
| O1B | P2 | C3B | F1B | 28.2° | 66.5° |
| O1B | P2 | C3B | F2B | 88.7° | 177.0° |
| O1B | P2 | C3B | P3 | 150.9° | 58.0° |
| O2B | P2 | O1B | H1B | 82.8° | 4.2° |
| O2B | P2 | C3B | F1B | 98.8° | 60.0° |
| O2B | P2 | C3B | F2B | 144.4° | 50.4° |
| O2B | P2 | C3B | P3 | 23.9° | 175.4° |
| C3B | P2 | O1B | H1B | 158.6° | 131.4° |
| P2 | C3B | F1B | F2B | 116.1° | 106.0° |
| P2 | C3B | F1B | P3 | 125.2° | 147.2° |
| P2 | C3B | F2B | P3 | 124.1° | 147.3° |
| P2 | C3B | P3 | O1G | 24.3° | 59.0° |
| P2 | C3B | P3 | O2G | 154.1° | 175.4° |
| P2 | C3B | P3 | O3G | 91.6° | 48.8° |
| F1B | C3B | F2B | P3 | 119.8° | 106.5° |
| F1B | C3B | P3 | O1G | 145.5° | 65.6° |
| F1B | C3B | P3 | O2G | 84.7° | 60.0° |
| F1B | C3B | P3 | O3G | 29.6° | 173.4° |
| F2B | C3B | P3 | O1G | 95.6° | 176.3° |
| F2B | C3B | P3 | O2G | 34.2° | 50.7° |
| F2B | C3B | P3 | O3G | 148.4° | 75.9° |
| C3B | P3 | O1G | O2G | 122.7° | 125.8° |
| C3B | P3 | O1G | O3G | 112.8° | 108.8° |
| C3B | P3 | O2G | O3G | 111.8° | 121.1° |
| C3B | P3 | O1G | H1G | 164.7° | 176.9° |
| C3B | P3 | O3G | H3G | 175.2° | 177.5° |
| O1G | P3 | O2G | O3G | 125.0° | 119.2° |
| O1G | P3 | O3G | H3G | 69.4° | 74.4° |
| O2G | P3 | O1G | H1G | 42.0° | 51.1° |
| O2G | P3 | O3G | H3G | 61.5° | 51.0° |
| O3G | P3 | O1G | H1G | 82.5° | 74.4° |
| C4' | C5' | H5'1 | H5'2 | 119.5° | 121.7° |
| C5' | C4' | C3' | O4' | 120.1° | 118.5° |
| C5' | C4' | C3' | H4' | 116.5° | 123.8° |
| C5' | C4' | O4' | H4' | 116.5° | 118.0° |
| C5' | C4' | O4' | C1' | 151.3° | 116.0° |
| C5' | C4' | C3' | C2' | 159.5° | 92.6° |
| C5' | C4' | C3' | O3' | 81.9° | 152.1° |
| C5' | C4' | C3' | H3' | 36.6° | 31.2° |
| H5'1 | C5' | C4' | C3' | 60.6° | 60.0° |
| H5'1 | C5' | C4' | O4' | 177.6° | 57.7° |
| H5'1 | C5' | C4' | H4' | 59.0° | 174.7° |
| H5'2 | C5' | C4' | C3' | 178.9° | 60.9° |
| H5'2 | C5' | C4' | O4' | 62.0° | 178.7° |
| H5'2 | C5' | C4' | H4' | 61.4° | 64.3° |
| C3' | C4' | O4' | H4' | 119.7° | 120.5° |
| C3' | C4' | O4' | C1' | 27.5° | 5.5° |
| C4' | C3' | C2' | C1' | 35.9° | 34.8° |
| C4' | C3' | C2' | O3' | 117.8° | 116.2° |
| C4' | C3' | C2' | H3' | 123.7° | 123.9° |
| C4' | C3' | C2' | H2'1 | 84.1° | 82.2° |
| C4' | C3' | C2' | H2'2 | 158.5° | 155.2° |
| C4' | C3' | O3' | H3' | 124.3° | 124.6° |
| C4' | C3' | O3' | H1 | 105.7° | 164.4° |
| C4' | O4' | C1' | N9 | 125.9° | 141.8° |
| C4' | O4' | C1' | C2' | 4.2° | 17.3° |
| C4' | O4' | C1' | H1' | 115.3° | 103.1° |
| O4' | C4' | C3' | C2' | 39.4° | 25.9° |
| O4' | C4' | C3' | O3' | 158.1° | 89.4° |
| O4' | C4' | C3' | H3' | 83.5° | 149.7° |
| H4' | C4' | O4' | C1' | 92.2° | 126.0° |
| H4' | C4' | C3' | C2' | 84.0° | 143.6° |
| H4' | C4' | C3' | O3' | 34.7° | 28.3° |
| H4' | C4' | C3' | H3' | 153.1° | 92.6° |
| O4' | C1' | N9 | C2' | 118.2° | 120.0° |
| O4' | C1' | N9 | H1' | 122.2° | 116.5° |
| O4' | C1' | C2' | H1' | 122.2° | 117.9° |
| O4' | C1' | N9 | C8 | 36.4° | 33.5° |
| O4' | C1' | N9 | C4 | 146.2° | 146.5° |
| O4' | C1' | C2' | C3' | 20.7° | 32.7° |
| O4' | C1' | C2' | H2'1 | 99.3° | 84.0° |
| O4' | C1' | C2' | H2'2 | 143.3° | 154.9° |
| N9 | C1' | C2' | H1' | 118.8° | 120.3° |
| C1' | N9 | C8 | C4 | 177.7° | 180.0° |
| C1' | N9 | C4 | C5 | 175.8° | 180.0° |
| C1' | N9 | C4 | N3 | 3.1° | 0.0° |
| C1' | N9 | C8 | N7 | 176.2° | 180.0° |
| C1' | N9 | C8 | H8 | 3.8° | 0.0° |
| N9 | C1' | C2' | C3' | 98.3° | 154.5° |
| N9 | C1' | C2' | H2'1 | 141.7° | 37.8° |
| N9 | C1' | C2' | H2'2 | 24.2° | 83.3° |
| C2' | C1' | N9 | C8 | 81.8° | 86.6° |
| C2' | C1' | N9 | C4 | 95.5° | 93.4° |
| C1' | C2' | C3' | H2'1 | 120.0° | 117.0° |
| C1' | C2' | C3' | H2'2 | 122.5° | 120.4° |
| C1' | C2' | H2'1 | H2'2 | 122.9° | 122.9° |
| C1' | C2' | C3' | O3' | 153.7° | 81.3° |
| C1' | C2' | C3' | H3' | 87.8° | 158.8° |
| H1' | C1' | N9 | C8 | 158.6° | 150.0° |
| H1' | C1' | N9 | C4 | 24.1° | 30.0° |
| H1' | C1' | C2' | C3' | 142.9° | 85.2° |
| H1' | C1' | C2' | H2'1 | 22.9° | 158.1° |
| H1' | C1' | C2' | H2'2 | 94.6° | 37.0° |
| C8 | N9 | C4 | C5 | 2.1° | 0.0° |
| C8 | N9 | C4 | N3 | 179.1° | 180.0° |
| N9 | C8 | N7 | C5 | 0.4° | 0.0° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C4 | C5 | N3 | 178.8° | 180.0° |
| N9 | C4 | N3 | C2 | 178.8° | 180.0° |
| N9 | C4 | C5 | C6 | 177.4° | 180.0° |
| N9 | C4 | C5 | N7 | 2.0° | 0.0° |
| C4 | N9 | C8 | N7 | 1.6° | 0.0° |
| C4 | N9 | C8 | H8 | 178.4° | 180.0° |
| C5 | C4 | N3 | C2 | 0.2° | 0.0° |
| C4 | C5 | C6 | N1 | 1.5° | 0.1° |
| C4 | C5 | C6 | O6 | 177.8° | 180.0° |
| C4 | C5 | C6 | N7 | 179.3° | 179.9° |
| C4 | C5 | N7 | C8 | 1.0° | 0.0° |
| C4 | N3 | C2 | N2 | 177.9° | 180.0° |
| C4 | N3 | C2 | N1 | 1.4° | 0.0° |
| N3 | C4 | C5 | C6 | 1.3° | 0.0° |
| N3 | C4 | C5 | N7 | 179.3° | 180.0° |
| N3 | C2 | N2 | N1 | 179.4° | 180.0° |
| N3 | C2 | N2 | HN21 | 94.9° | 22.9° |
| N3 | C2 | N2 | HN22 | 145.1° | 157.1° |
| N3 | C2 | N1 | C6 | 1.2° | 0.0° |
| N3 | C2 | N1 | HN1 | 178.9° | 180.0° |
| C2 | N2 | HN21 | HN22 | 120.0° | 180.0° |
| N2 | C2 | N1 | C6 | 178.2° | 180.0° |
| N2 | C2 | N1 | HN1 | 1.8° | 0.0° |
| N1 | C2 | N2 | HN21 | 84.4° | 157.1° |
| N1 | C2 | N2 | HN22 | 35.6° | 22.9° |
| C2 | N1 | C6 | HN1 | 180.0° | 180.0° |
| C2 | N1 | C6 | O6 | 178.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| N1 | C6 | O6 | C5 | 179.2° | 179.9° |
| N1 | C6 | C5 | N7 | 179.2° | 180.0° |
| HN1 | N1 | C6 | O6 | 1.1° | 0.1° |
| HN1 | N1 | C6 | C5 | 179.5° | 180.0° |
| O6 | C6 | C5 | N7 | 1.5° | 0.1° |
| C6 | C5 | N7 | C8 | 178.3° | 180.0° |
| C5 | N7 | C8 | H8 | 179.6° | 180.0° |
| C3' | C2' | H2'1 | H2'2 | 122.9° | 125.7° |
| C2' | C3' | O3' | H3' | 123.6° | 123.5° |
| C2' | C3' | O3' | H1 | 6.4° | 83.7° |
| H2'1 | C2' | C3' | O3' | 33.7° | 161.6° |
| H2'1 | C2' | C3' | H3' | 152.3° | 41.7° |
| H2'2 | C2' | C3' | O3' | 83.7° | 39.1° |
| H2'2 | C2' | C3' | H3' | 34.8° | 80.8° |
| H3' | C3' | O3' | H1 | 130.0° | 39.8° |
