GFB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	sing	1.61Å	1.51Å
O1P	HO1P	sing	0.97Å	0.95Å
O3P	P	doub	1.48Å	1.51Å
P	O5'	sing	1.61Å	1.59Å
P	O2P	sing	1.61Å	1.63Å
O2P	P1	sing	1.61Å	1.62Å
O5'	C5'	sing	1.43Å	1.43Å
O1	P1	sing	1.61Å	1.60Å
O1X	P1	doub	1.48Å	1.51Å
P1	O2X	sing	1.61Å	1.50Å
C4'	C5'	sing	1.53Å	1.53Å
C5'	H5'A	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
H4'	C4'	sing	1.09Å	1.10Å
C3'	C4'	sing	1.54Å	1.52Å
C4'	O4'	sing	1.44Å	1.43Å
O4'	C1'	sing	1.44Å	1.43Å
O3'	C3'	sing	1.43Å	1.44Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
C2'	C1'	sing	1.55Å	1.52Å
H1'	C1'	sing	1.09Å	1.10Å
C1'	N9	sing	1.47Å	1.49Å
HO3'	O3'	sing	0.97Å	0.95Å
O2'	C2'	sing	1.43Å	1.43Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
N9	C4	sing	1.37Å	1.33Å	Aromatic
N9	C8	sing	1.36Å	1.35Å	Aromatic
H8	C8	sing	1.08Å	1.08Å
C8	N7	doub	1.30Å	1.36Å	Aromatic
N3	C4	sing	1.34Å	1.35Å
C4	C5	doub	1.40Å	1.38Å	Aromatic
C5	N7	sing	1.36Å	1.35Å	Aromatic
C5	C6	sing	1.41Å	1.39Å
N1	C6	sing	1.35Å	1.36Å
C6	O6	doub	1.22Å	1.25Å
C2	N1	sing	1.36Å	1.35Å
N1	HN1	sing	0.97Å	1.00Å
N3	C2	doub	1.31Å	1.33Å
N2	C2	sing	1.37Å	1.35Å
HN2	N2	sing	0.97Å	1.00Å
N2	HN2A	sing	0.97Å	1.00Å
C2A	C1	sing	1.53Å	1.54Å
C1	O5	sing	1.43Å	1.42Å
C1	H1	sing	1.09Å	1.10Å
C1	O1	sing	1.43Å	1.42Å
C3	C2A	sing	1.53Å	1.53Å
O2	C2A	sing	1.43Å	1.42Å
H2A	C2A	sing	1.09Å	1.10Å
C5A	O5	sing	1.43Å	1.44Å
O3	C3	sing	1.43Å	1.45Å
C3	H3	sing	1.09Å	1.10Å
C3	C4A	sing	1.53Å	1.53Å
HO2	O2	sing	0.97Å	0.95Å
H4A	C4A	sing	1.09Å	1.10Å
O4	C4A	sing	1.43Å	1.43Å
C4A	C5A	sing	1.53Å	1.54Å
HO3	O3	sing	0.97Å	0.95Å
C5A	H5A	sing	1.09Å	1.10Å
C5A	C6A	sing	1.53Å	1.52Å
O4	HO4	sing	0.97Å	0.95Å
H6A	C6A	sing	1.09Å	1.10Å
H6AA	C6A	sing	1.09Å	1.10Å
C6A	H6AB	sing	1.09Å	1.10Å
O2X	HO2X	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O1P	HO1P	109.5°	113.9°
O1P	P	O3P	116.1°	109.4°
O1P	P	O5'	109.3°	109.5°
O1P	P	O2P	106.2°	109.5°
O3P	P	O5'	110.9°	109.5°
O3P	P	O2P	111.0°	109.5°
O5'	P	O2P	102.4°	109.5°
P	O5'	C5'	117.1°	123.0°
P	O2P	P1	132.1°	134.0°
O2P	P1	O1	105.1°	109.5°
O2P	P1	O1X	106.4°	109.5°
O2P	P1	O2X	108.8°	109.5°
O5'	C5'	C4'	105.8°	109.5°
O5'	C5'	H5'A	110.4°	109.5°
O5'	C5'	H5'	110.4°	109.5°
O1	P1	O1X	113.1°	109.4°
O1	P1	O2X	106.4°	109.4°
P1	O1	C1	123.4°	123.0°
O1X	P1	O2X	116.5°	109.5°
P1	O2X	HO2X	109.5°	114.0°
C4'	C5'	H5'A	110.4°	109.5°
C4'	C5'	H5'	110.4°	109.5°
C5'	C4'	H4'	109.0°	109.9°
C5'	C4'	C3'	113.1°	109.8°
C5'	C4'	O4'	109.0°	109.9°
H5'A	C5'	H5'	109.5°	109.5°
H4'	C4'	C3'	109.1°	109.9°
H4'	C4'	O4'	110.3°	109.9°
C3'	C4'	O4'	106.4°	107.3°
C4'	C3'	O3'	113.3°	110.5°
C4'	C3'	C2'	102.3°	104.1°
C4'	C3'	H3'	108.7°	110.5°
C4'	O4'	C1'	110.6°	107.0°
O4'	C1'	C2'	105.1°	103.5°
O4'	C1'	H1'	112.5°	110.6°
O4'	C1'	N9	111.2°	110.6°
O3'	C3'	C2'	113.7°	110.5°
O3'	C3'	H3'	109.7°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
C2'	C3'	H3'	108.7°	110.5°
C3'	C2'	C1'	102.7°	102.1°
C3'	C2'	O2'	111.6°	110.9°
C3'	C2'	H2'	110.3°	110.9°
C2'	C1'	H1'	111.1°	110.8°
C2'	C1'	N9	104.8°	110.6°
C1'	C2'	O2'	109.8°	110.9°
C1'	C2'	H2'	110.3°	111.0°
H1'	C1'	N9	111.6°	110.5°
C1'	N9	C4	121.9°	126.3°
C1'	N9	C8	129.7°	126.3°
O2'	C2'	H2'	111.7°	110.8°
C2'	O2'	HO2'	109.5°	114.0°
C4	N9	C8	108.3°	107.4°
N9	C4	N3	130.7°	134.2°
N9	C4	C5	108.1°	106.2°
N9	C8	H8	125.7°	125.1°
N9	C8	N7	108.7°	109.8°
H8	C8	N7	125.6°	125.1°
C8	N7	C5	107.7°	109.3°
N3	C4	C5	121.2°	119.7°
C4	N3	C2	119.7°	121.1°
C4	C5	N7	107.2°	107.2°
C4	C5	C6	117.9°	118.6°
N7	C5	C6	134.8°	134.2°
C5	C6	N1	119.2°	118.4°
C5	C6	O6	118.9°	120.8°
N1	C6	O6	121.9°	120.8°
C6	N1	C2	121.0°	120.3°
C6	N1	HN1	119.5°	119.9°
C2	N1	HN1	119.5°	119.8°
N1	C2	N3	121.0°	121.9°
N1	C2	N2	123.1°	119.1°
N3	C2	N2	115.9°	119.0°
C2	N2	HN2	120.0°	120.0°
C2	N2	HN2A	120.0°	120.0°
HN2	N2	HN2A	120.0°	120.0°
C2A	C1	O5	111.9°	109.4°
C2A	C1	H1	110.2°	109.5°
C2A	C1	O1	106.7°	109.5°
C1	C2A	C3	113.1°	109.1°
C1	C2A	O2	109.2°	109.5°
C1	C2A	H2A	108.2°	109.5°
O5	C1	H1	112.0°	109.5°
O5	C1	O1	103.6°	109.5°
C1	O5	C5A	114.9°	114.1°
H1	C1	O1	112.1°	109.5°
C3	C2A	O2	108.3°	109.5°
C3	C2A	H2A	108.3°	109.5°
C2A	C3	O3	109.7°	109.5°
C2A	C3	H3	108.4°	109.5°
C2A	C3	C4A	109.8°	109.1°
O2	C2A	H2A	109.6°	109.6°
C2A	O2	HO2	109.5°	114.0°
O5	C5A	C4A	112.7°	109.4°
O5	C5A	H5A	109.5°	109.5°
O5	C5A	C6A	107.6°	109.4°
O3	C3	H3	109.3°	109.6°
O3	C3	C4A	111.3°	109.6°
C3	O3	HO3	109.5°	113.9°
H3	C3	C4A	108.3°	109.5°
C3	C4A	H4A	108.4°	109.5°
C3	C4A	O4	108.5°	109.5°
C3	C4A	C5A	113.6°	109.2°
H4A	C4A	O4	109.7°	109.6°
H4A	C4A	C5A	108.4°	109.5°
O4	C4A	C5A	108.2°	109.5°
C4A	O4	HO4	109.5°	113.9°
C4A	C5A	H5A	108.3°	109.5°
C4A	C5A	C6A	110.2°	109.5°
H5A	C5A	C6A	108.4°	109.5°
C5A	C6A	H6A	109.5°	109.5°
C5A	C6A	H6AA	109.5°	109.5°
C5A	C6A	H6AB	109.5°	109.4°
H6A	C6A	H6AA	109.5°	109.5°
H6A	C6A	H6AB	109.4°	109.5°
H6AA	C6A	H6AB	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O3P	O5'	125.5°	120.0°
O1P	P	O3P	O2P	121.4°	120.0°
O1P	P	O5'	O2P	112.3°	120.0°
O1P	P	O2P	P1	161.2°	75.0°
O1P	P	O5'	C5'	47.0°	65.0°
HO1P	O1P	P	O3P	0.0°	180.0°
HO1P	O1P	P	O5'	126.3°	60.0°
HO1P	O1P	P	O2P	123.9°	60.0°
O3P	P	O5'	O2P	118.5°	120.0°
O3P	P	O2P	P1	71.8°	45.0°
O3P	P	O5'	C5'	176.2°	55.0°
O5'	P	O2P	P1	46.6°	165.0°
P	O5'	C5'	C4'	104.5°	180.0°
P	O5'	C5'	H5'A	136.1°	60.0°
P	O5'	C5'	H5'	14.9°	60.0°
O2P	P	O5'	C5'	65.3°	175.0°
P	O2P	P1	O1	1.1°	160.0°
P	O2P	P1	O1X	121.2°	40.0°
P	O2P	P1	O2X	112.6°	80.0°
O2P	P1	O1	O1X	115.6°	120.0°
O2P	P1	O1	O2X	115.3°	120.0°
O2P	P1	O1X	O2X	121.4°	120.0°
O2P	P1	O1	C1	120.8°	175.0°
O2P	P1	O2X	HO2X	120.1°	60.0°
O5'	C5'	C4'	H5'A	119.4°	120.0°
O5'	C5'	C4'	H5'	119.4°	120.0°
O5'	C5'	H5'A	H5'	121.7°	120.0°
O5'	C5'	C4'	H4'	27.8°	54.6°
O5'	C5'	C4'	C3'	93.7°	175.7°
O5'	C5'	C4'	O4'	148.2°	66.5°
O1	P1	O1X	O2X	123.8°	119.9°
P1	O1	C1	C2A	108.6°	150.0°
P1	O1	C1	O5	133.1°	90.0°
P1	O1	C1	H1	12.2°	30.0°
O1	P1	O2X	HO2X	127.1°	60.0°
O1X	P1	O1	C1	5.2°	55.0°
O1X	P1	O2X	HO2X	0.0°	180.0°
O2X	P1	O1	C1	123.9°	65.0°
C4'	C5'	H5'A	H5'	121.7°	120.0°
C5'	C4'	H4'	C3'	123.9°	121.0°
C5'	C4'	H4'	O4'	119.6°	121.1°
C5'	C4'	C3'	O4'	119.7°	119.4°
C5'	C4'	O4'	C1'	128.7°	145.9°
C5'	C4'	C3'	O3'	91.3°	119.9°
C5'	C4'	C3'	C2'	145.9°	121.5°
C5'	C4'	C3'	H3'	31.0°	2.8°
H5'A	C5'	C4'	H4'	91.7°	65.4°
H5'A	C5'	C4'	C3'	146.9°	55.7°
H5'A	C5'	C4'	O4'	28.8°	173.5°
H5'	C5'	C4'	H4'	147.2°	174.6°
H5'	C5'	C4'	C3'	25.7°	64.3°
H5'	C5'	C4'	O4'	92.4°	53.5°
H4'	C4'	C3'	O4'	118.9°	119.5°
H4'	C4'	O4'	C1'	111.7°	93.0°
H4'	C4'	C3'	O3'	30.2°	1.2°
H4'	C4'	C3'	C2'	92.7°	117.5°
H4'	C4'	C3'	H3'	152.5°	123.9°
C3'	C4'	O4'	C1'	6.5°	26.5°
C4'	C3'	O3'	C2'	116.2°	114.7°
C4'	C3'	O3'	H3'	121.7°	122.6°
C4'	C3'	C2'	H3'	114.9°	118.7°
C4'	C3'	C2'	C1'	35.1°	20.9°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	O2'	82.4°	139.1°
C4'	C3'	C2'	H2'	152.7°	97.3°
O4'	C4'	C3'	O3'	149.1°	120.7°
O4'	C4'	C3'	C2'	26.3°	2.0°
O4'	C4'	C3'	H3'	88.6°	116.7°
C4'	O4'	C1'	C2'	16.3°	40.1°
C4'	O4'	C1'	H1'	137.3°	78.6°
C4'	O4'	C1'	N9	96.6°	158.6°
O4'	C1'	C2'	C3'	32.2°	37.1°
O4'	C1'	C2'	H1'	122.0°	118.6°
O4'	C1'	C2'	N9	117.3°	118.5°
O4'	C1'	H1'	N9	125.9°	122.8°
O4'	C1'	C2'	O2'	86.7°	155.2°
O4'	C1'	C2'	H2'	149.8°	81.2°
O4'	C1'	N9	C4	177.6°	156.4°
O4'	C1'	N9	C8	6.2°	23.9°
O3'	C3'	C2'	H3'	122.6°	122.7°
O3'	C3'	C2'	C1'	157.7°	97.8°
O3'	C3'	C2'	O2'	40.1°	20.4°
O3'	C3'	C2'	H2'	84.7°	144.0°
C3'	C2'	C1'	O2'	118.9°	118.2°
C3'	C2'	C1'	H2'	117.6°	118.2°
C3'	C2'	C1'	H1'	154.2°	81.5°
C3'	C2'	C1'	N9	85.1°	155.5°
C2'	C3'	O3'	HO3'	63.8°	65.3°
C3'	C2'	O2'	H2'	124.1°	123.6°
C3'	C2'	O2'	HO2'	180.0°	61.5°
H3'	C3'	C2'	C1'	79.7°	139.6°
H3'	C3'	O3'	HO3'	58.3°	57.4°
H3'	C3'	C2'	O2'	162.7°	102.2°
H3'	C3'	C2'	H2'	37.9°	21.3°
C2'	C1'	H1'	N9	116.6°	123.0°
C1'	C2'	O2'	H2'	122.7°	123.7°
C1'	C2'	O2'	HO2'	66.8°	174.2°
C2'	C1'	N9	C4	69.4°	89.5°
C2'	C1'	N9	C8	106.8°	90.2°
H1'	C1'	C2'	O2'	35.3°	36.7°
H1'	C1'	C2'	H2'	88.2°	160.3°
H1'	C1'	N9	C4	51.0°	33.6°
H1'	C1'	N9	C8	132.8°	146.7°
N9	C1'	C2'	O2'	156.0°	86.3°
N9	C1'	C2'	H2'	32.5°	37.3°
C1'	N9	C4	C8	176.9°	179.7°
C1'	N9	C8	H8	2.8°	0.1°
C1'	N9	C8	N7	177.2°	179.9°
C1'	N9	C4	N3	1.9°	0.0°
C1'	N9	C4	C5	178.2°	179.9°
H2'	C2'	O2'	HO2'	55.9°	62.1°
C4	N9	C8	H8	179.4°	179.8°
C4	N9	C8	N7	0.6°	0.2°
N9	C4	N3	C5	179.9°	179.9°
N9	C4	C5	N7	1.5°	0.1°
N9	C4	C5	C6	179.3°	180.0°
N9	C4	N3	C2	179.6°	180.0°
N9	C8	H8	N7	180.0°	180.0°
C8	N9	C4	N3	178.8°	179.7°
C8	N9	C4	C5	1.3°	0.2°
N9	C8	N7	C5	0.3°	0.1°
H8	C8	N7	C5	179.7°	179.9°
C8	N7	C5	C4	1.1°	0.0°
C8	N7	C5	C6	179.8°	179.8°
N3	C4	C5	N7	178.6°	179.8°
N3	C4	C5	C6	0.7°	0.0°
C4	N3	C2	N1	0.1°	0.0°
C4	N3	C2	N2	179.3°	180.0°
C4	C5	N7	C6	179.1°	179.8°
C4	C5	C6	N1	0.8°	0.0°
C4	C5	C6	O6	180.0°	180.0°
C5	C4	N3	C2	0.3°	0.0°
N7	C5	C6	N1	178.2°	179.8°
N7	C5	C6	O6	1.0°	0.2°
C5	C6	N1	O6	179.2°	180.0°
C5	C6	N1	C2	0.6°	0.0°
C5	C6	N1	HN1	179.4°	180.0°
C6	N1	C2	HN1	180.0°	180.0°
C6	N1	C2	N3	0.2°	0.0°
C6	N1	C2	N2	179.1°	179.9°
O6	C6	N1	C2	179.8°	180.0°
O6	C6	N1	HN1	0.2°	0.0°
N1	C2	N3	N2	179.4°	180.0°
N1	C2	N2	HN2	179.3°	180.0°
N1	C2	N2	HN2A	0.6°	0.0°
HN1	N1	C2	N3	179.7°	180.0°
HN1	N1	C2	N2	0.9°	0.0°
N3	C2	N2	HN2	0.0°	0.0°
N3	C2	N2	HN2A	180.0°	180.0°
C2	N2	HN2	HN2A	180.0°	180.0°
C2A	C1	O5	H1	124.4°	120.0°
C2A	C1	O5	O1	114.6°	120.0°
C2A	C1	H1	O1	118.7°	120.0°
C1	C2A	C3	O2	121.2°	119.9°
C1	C2A	C3	H2A	119.9°	119.9°
C1	C2A	O2	H2A	118.3°	120.1°
C2A	C1	O5	C5A	54.9°	61.2°
C1	C2A	C3	O3	171.5°	176.9°
C1	C2A	C3	H3	69.2°	62.9°
C1	C2A	C3	C4A	48.9°	57.0°
C1	C2A	O2	HO2	94.7°	60.0°
O5	C1	H1	O1	115.9°	120.0°
O5	C1	C2A	C3	53.0°	57.6°
O5	C1	C2A	O2	173.7°	177.5°
O5	C1	C2A	H2A	67.0°	62.2°
C1	O5	C5A	C4A	53.3°	61.2°
C1	O5	C5A	H5A	67.3°	58.8°
C1	O5	C5A	C6A	175.0°	178.8°
H1	C1	C2A	C3	72.4°	62.4°
H1	C1	C2A	O2	48.4°	57.5°
H1	C1	C2A	H2A	167.7°	177.7°
H1	C1	O5	C5A	69.5°	58.8°
O1	C1	C2A	C3	165.7°	177.6°
O1	C1	C2A	O2	73.6°	62.5°
O1	C1	C2A	H2A	45.7°	57.7°
O1	C1	O5	C5A	169.5°	178.9°
C3	C2A	O2	H2A	118.0°	120.2°
C2A	C3	O3	H3	118.7°	120.2°
C2A	C3	O3	C4A	121.7°	119.6°
C2A	C3	H3	C4A	119.0°	119.6°
C3	C2A	O2	HO2	141.7°	179.7°
C2A	C3	C4A	H4A	167.8°	176.9°
C2A	C3	C4A	O4	73.1°	62.9°
C2A	C3	C4A	C5A	47.3°	57.0°
C2A	C3	O3	HO3	180.0°	60.0°
O2	C2A	C3	O3	67.3°	63.2°
O2	C2A	C3	H3	52.0°	57.0°
O2	C2A	C3	C4A	170.1°	176.9°
H2A	C2A	C3	O3	51.6°	57.1°
H2A	C2A	C3	H3	170.9°	177.2°
H2A	C2A	C3	C4A	71.0°	62.9°
H2A	C2A	O2	HO2	23.7°	60.1°
O5	C5A	C4A	C3	49.4°	57.6°
O5	C5A	C4A	H4A	170.0°	177.5°
O5	C5A	C4A	O4	71.1°	62.3°
O5	C5A	C4A	H5A	121.3°	120.0°
O5	C5A	C4A	C6A	120.2°	119.9°
O5	C5A	H5A	C6A	117.1°	120.0°
O5	C5A	C6A	H6A	180.0°	60.1°
O5	C5A	C6A	H6AA	60.0°	60.0°
O5	C5A	C6A	H6AB	60.0°	179.9°
O3	C3	H3	C4A	121.4°	120.2°
O3	C3	C4A	H4A	70.5°	63.2°
O3	C3	C4A	O4	48.5°	57.0°
O3	C3	C4A	C5A	169.0°	176.9°
H3	C3	C4A	H4A	49.7°	57.0°
H3	C3	C4A	O4	168.7°	177.2°
H3	C3	C4A	C5A	70.8°	62.9°
H3	C3	O3	HO3	61.3°	60.2°
C3	C4A	H4A	O4	118.3°	120.2°
C3	C4A	H4A	C5A	123.8°	119.7°
C3	C4A	O4	C5A	123.7°	119.7°
C4A	C3	O3	HO3	58.3°	179.6°
C3	C4A	C5A	H5A	71.9°	62.4°
C3	C4A	C5A	C6A	169.6°	177.6°
C3	C4A	O4	HO4	180.0°	180.0°
H4A	C4A	O4	C5A	118.0°	120.2°
H4A	C4A	C5A	H5A	48.6°	57.6°
H4A	C4A	C5A	C6A	69.8°	62.5°
H4A	C4A	O4	HO4	61.8°	59.8°
O4	C4A	C5A	H5A	167.5°	177.8°
O4	C4A	C5A	C6A	49.0°	57.7°
C4A	C5A	H5A	C6A	119.6°	120.1°
C5A	C4A	O4	HO4	56.3°	60.3°
C4A	C5A	C6A	H6A	56.7°	180.0°
C4A	C5A	C6A	H6AA	176.8°	60.0°
C4A	C5A	C6A	H6AB	63.2°	60.0°
H5A	C5A	C6A	H6A	61.7°	59.9°
H5A	C5A	C6A	H6AA	58.4°	180.0°
H5A	C5A	C6A	H6AB	178.4°	60.1°
C5A	C6A	H6A	H6AA	120.0°	120.0°
C5A	C6A	H6A	H6AB	120.0°	120.0°
C5A	C6A	H6AA	H6AB	120.0°	119.9°
H6A	C6A	H6AA	H6AB	120.0°	120.0°

Definition date:	2011-08-17
Last modified:	2014-09-05
Release status:	REL
Processing site:	EBI
Derived from:	3ZY5