GF0
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O6 | C6 | doub | 1.22Å | 1.23Å | |
C6 | C5 | sing | 1.41Å | 1.43Å | |
C6 | N1 | sing | 1.35Å | 1.38Å | |
N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
N1 | C2 | sing | 1.36Å | 1.36Å | |
C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
C4 | N3 | sing | 1.34Å | 1.36Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | |
C2 | N2 | sing | 1.37Å | 1.31Å | |
N9 | C1' | sing | 1.47Å | 1.48Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C3' | C4' | sing | 1.55Å | 1.53Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
O4' | C4' | sing | 1.44Å | 1.42Å | |
C1' | C2' | sing | 1.54Å | 1.54Å | |
C2' | F | sing | 1.40Å | 1.39Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
N2 | HN2 | sing | 0.97Å | 1.00Å | |
N2 | HN2A | sing | 0.97Å | 1.00Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | H1 | sing | 0.97Å | 0.95Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
O5' | H5T | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O6 | C6 | C5 | 127.8° | 120.9° |
O6 | C6 | N1 | 118.4° | 120.8° |
C5 | C6 | N1 | 113.8° | 118.3° |
C6 | C5 | N7 | 131.2° | 134.1° |
C6 | C5 | C4 | 118.4° | 118.6° |
C6 | N1 | C2 | 123.0° | 120.4° |
C6 | N1 | HN1 | 118.5° | 119.8° |
C5 | N7 | C8 | 103.9° | 109.3° |
N7 | C5 | C4 | 110.3° | 107.2° |
N7 | C8 | N9 | 114.1° | 109.8° |
N7 | C8 | H8 | 123.0° | 125.1° |
C5 | C4 | N9 | 106.5° | 106.1° |
C5 | C4 | N3 | 126.6° | 119.7° |
N1 | C2 | N3 | 125.1° | 121.9° |
N1 | C2 | N2 | 118.3° | 119.1° |
C2 | N1 | HN1 | 118.5° | 119.8° |
C8 | N9 | C4 | 105.2° | 107.5° |
C8 | N9 | C1' | 128.8° | 126.3° |
N9 | C8 | H8 | 123.0° | 125.1° |
N9 | C4 | N3 | 126.9° | 134.2° |
C4 | N9 | C1' | 125.6° | 126.2° |
C4 | N3 | C2 | 113.0° | 121.1° |
N3 | C2 | N2 | 116.7° | 119.0° |
C2 | N2 | HN2 | 120.0° | 120.0° |
C2 | N2 | HN2A | 120.0° | 120.0° |
N9 | C1' | O4' | 109.3° | 109.9° |
N9 | C1' | C2' | 113.9° | 109.8° |
N9 | C1' | H1' | 108.7° | 109.9° |
O5' | C5' | C4' | 112.7° | 109.4° |
O5' | C5' | H5'A | 108.7° | 109.4° |
O5' | C5' | H5' | 108.6° | 109.5° |
C5' | O5' | H5T | 109.5° | 114.0° |
C5' | C4' | C3' | 114.3° | 110.6° |
C5' | C4' | O4' | 110.1° | 110.7° |
C5' | C4' | H4' | 107.6° | 110.6° |
C4' | C5' | H5'A | 108.7° | 109.5° |
C4' | C5' | H5' | 108.7° | 109.5° |
C4' | C3' | C2' | 101.4° | 102.1° |
C4' | C3' | O3' | 111.4° | 110.9° |
C3' | C4' | O4' | 108.0° | 103.5° |
C4' | C3' | H3' | 109.8° | 110.9° |
C3' | C4' | H4' | 107.7° | 110.6° |
C2' | C3' | O3' | 112.4° | 110.9° |
C3' | C2' | C1' | 102.8° | 104.2° |
C3' | C2' | F | 111.9° | 110.5° |
C3' | C2' | H2' | 110.5° | 110.6° |
C2' | C3' | H3' | 109.9° | 110.9° |
O3' | C3' | H3' | 111.5° | 110.8° |
C3' | O3' | H1 | 109.5° | 114.0° |
C1' | O4' | C4' | 109.8° | 107.0° |
O4' | C1' | C2' | 107.2° | 107.3° |
O4' | C1' | H1' | 109.6° | 110.0° |
O4' | C4' | H4' | 109.1° | 110.6° |
C1' | C2' | F | 108.2° | 110.4° |
C2' | C1' | H1' | 108.1° | 109.9° |
C1' | C2' | H2' | 110.4° | 110.5° |
F | C2' | H2' | 112.7° | 110.4° |
HN2 | N2 | HN2A | 120.0° | 120.0° |
H5'A | C5' | H5' | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O6 | C6 | C5 | N1 | 179.1° | 179.5° |
O6 | C6 | C5 | N7 | 0.0° | 0.3° |
O6 | C6 | C5 | C4 | 177.8° | 180.0° |
O6 | C6 | N1 | C2 | 178.4° | 180.0° |
O6 | C6 | N1 | HN1 | 1.7° | 0.2° |
C6 | C5 | N7 | C4 | 178.0° | 179.7° |
C6 | C5 | N7 | C8 | 177.7° | 179.7° |
C5 | C6 | N1 | C2 | 0.8° | 0.5° |
C6 | C5 | C4 | N9 | 178.2° | 179.7° |
C6 | C5 | C4 | N3 | 0.5° | 0.2° |
C5 | C6 | N1 | HN1 | 179.1° | 179.7° |
N1 | C6 | C5 | N7 | 179.1° | 179.8° |
N1 | C6 | C5 | C4 | 1.3° | 0.5° |
C6 | N1 | C2 | HN1 | 180.0° | 179.8° |
C6 | N1 | C2 | N3 | 0.6° | 0.2° |
C6 | N1 | C2 | N2 | 179.2° | 179.8° |
C5 | N7 | C8 | N9 | 0.4° | 0.0° |
N7 | C5 | C4 | N9 | 0.0° | 0.0° |
N7 | C5 | C4 | N3 | 178.8° | 180.0° |
C5 | N7 | C8 | H8 | 179.6° | 180.0° |
C8 | N7 | C5 | C4 | 0.3° | 0.1° |
N7 | C8 | N9 | H8 | 180.0° | 180.0° |
N7 | C8 | N9 | C4 | 0.4° | 0.0° |
N7 | C8 | N9 | C1' | 172.6° | 179.9° |
C5 | C4 | N9 | C8 | 0.2° | 0.0° |
C5 | C4 | N9 | N3 | 178.7° | 179.9° |
C5 | C4 | N3 | C2 | 0.9° | 0.1° |
C5 | C4 | N9 | C1' | 172.8° | 180.0° |
N1 | C2 | N3 | C4 | 1.4° | 0.1° |
N1 | C2 | N3 | N2 | 179.8° | 180.0° |
N1 | C2 | N2 | HN2 | 179.8° | 0.0° |
N1 | C2 | N2 | HN2A | 0.2° | 180.0° |
C8 | N9 | C4 | C1' | 172.6° | 179.9° |
C8 | N9 | C4 | N3 | 178.5° | 180.0° |
C8 | N9 | C1' | O4' | 7.5° | 22.8° |
C8 | N9 | C1' | C2' | 127.4° | 95.0° |
C8 | N9 | C1' | H1' | 112.0° | 143.9° |
N9 | C4 | N3 | C2 | 179.3° | 180.0° |
C4 | N9 | C1' | O4' | 178.3° | 157.1° |
C4 | N9 | C1' | C2' | 61.9° | 85.1° |
C4 | N9 | C8 | H8 | 179.6° | 180.0° |
C4 | N9 | C1' | H1' | 58.7° | 36.0° |
C4 | N3 | C2 | N2 | 178.3° | 179.9° |
N3 | C4 | N9 | C1' | 6.0° | 0.1° |
N3 | C2 | N1 | HN1 | 179.4° | 180.0° |
N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
N3 | C2 | N2 | HN2A | 180.0° | 0.0° |
N2 | C2 | N1 | HN1 | 0.8° | 0.0° |
C2 | N2 | HN2 | HN2A | 180.0° | 180.0° |
N9 | C1' | C2' | C3' | 94.3° | 121.4° |
N9 | C1' | O4' | C2' | 123.9° | 119.3° |
N9 | C1' | O4' | H1' | 119.1° | 121.1° |
N9 | C1' | O4' | C4' | 114.5° | 145.9° |
N9 | C1' | C2' | H1' | 121.0° | 121.1° |
N9 | C1' | C2' | F | 147.2° | 119.9° |
C1' | N9 | C8 | H8 | 7.4° | 0.0° |
N9 | C1' | C2' | H2' | 23.5° | 2.6° |
O5' | C5' | C4' | H5'A | 120.5° | 119.9° |
O5' | C5' | C4' | H5' | 120.5° | 120.0° |
O5' | C5' | C4' | C3' | 68.5° | 175.0° |
O5' | C5' | C4' | O4' | 169.8° | 70.9° |
O5' | C5' | C4' | H4' | 51.0° | 52.1° |
O5' | C5' | H5'A | H5' | 118.5° | 120.0° |
C5' | C4' | C3' | O4' | 122.8° | 118.6° |
C5' | C4' | C3' | H4' | 119.5° | 122.8° |
C5' | C4' | C3' | C2' | 150.9° | 155.7° |
C5' | C4' | C3' | O3' | 89.3° | 86.1° |
C5' | C4' | O4' | C1' | 137.5° | 158.6° |
C5' | C4' | O4' | H4' | 117.9° | 123.0° |
C5' | C4' | C3' | H3' | 34.7° | 37.4° |
C4' | C5' | H5'A | H5' | 118.5° | 120.0° |
C4' | C5' | O5' | H5T | 180.0° | 180.0° |
C4' | C3' | C2' | O3' | 119.1° | 118.2° |
C4' | C3' | C2' | H3' | 116.1° | 118.2° |
C4' | C3' | O3' | H3' | 123.0° | 123.6° |
C3' | C4' | O4' | C1' | 12.1° | 40.1° |
C3' | C4' | O4' | H4' | 116.7° | 118.5° |
C4' | C3' | C2' | C1' | 32.0° | 20.8° |
C4' | C3' | C2' | F | 83.9° | 97.8° |
C4' | C3' | C2' | H2' | 149.7° | 139.6° |
C4' | C3' | O3' | H1 | 180.0° | 180.0° |
C3' | C4' | C5' | H5'A | 171.1° | 55.1° |
C3' | C4' | C5' | H5' | 52.0° | 65.0° |
C2' | C3' | O3' | H3' | 123.9° | 123.6° |
C3' | C2' | C1' | O4' | 26.7° | 2.1° |
C2' | C3' | C4' | O4' | 28.0° | 37.0° |
C3' | C2' | C1' | F | 118.5° | 118.6° |
C3' | C2' | C1' | H2' | 117.8° | 118.8° |
C3' | C2' | F | H2' | 125.2° | 122.7° |
C3' | C2' | C1' | H1' | 144.7° | 117.5° |
C2' | C3' | O3' | H1 | 66.9° | 67.2° |
C2' | C3' | C4' | H4' | 89.6° | 81.5° |
O3' | C3' | C4' | O4' | 147.9° | 155.2° |
O3' | C3' | C2' | C1' | 151.1° | 139.1° |
O3' | C3' | C2' | F | 35.2° | 20.4° |
O3' | C3' | C2' | H2' | 91.2° | 102.2° |
O3' | C3' | C4' | H4' | 30.2° | 36.7° |
O4' | C1' | C2' | H1' | 118.0° | 119.6° |
O4' | C1' | C2' | F | 91.8° | 120.7° |
O4' | C1' | C2' | H2' | 144.5° | 116.8° |
C1' | O4' | C4' | H4' | 104.7° | 78.4° |
C4' | O4' | C1' | C2' | 9.4° | 26.5° |
C4' | O4' | C1' | H1' | 126.4° | 93.0° |
O4' | C4' | C3' | H3' | 88.2° | 81.2° |
O4' | C4' | C5' | H5'A | 49.4° | 169.2° |
O4' | C4' | C5' | H5' | 69.7° | 49.1° |
C1' | C2' | F | H2' | 122.3° | 122.6° |
C1' | C2' | C3' | H3' | 84.2° | 97.4° |
F | C2' | C1' | H1' | 26.2° | 1.2° |
F | C2' | C3' | H3' | 160.0° | 144.0° |
H1' | C1' | C2' | H2' | 97.5° | 123.7° |
H2' | C2' | C3' | H3' | 33.6° | 21.4° |
H3' | C3' | O3' | H1 | 57.0° | 56.4° |
H3' | C3' | C4' | H4' | 154.2° | 160.3° |
H4' | C4' | C5' | H5'A | 69.4° | 67.8° |
H4' | C4' | C5' | H5' | 171.5° | 172.2° |
H5'A | C5' | O5' | H5T | 59.5° | 60.0° |
H5' | C5' | O5' | H5T | 59.6° | 60.0° |