GEG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1' | O1' | doub | 1.21Å | 1.25Å | |
C1' | O2' | sing | 1.34Å | 1.27Å | |
C1' | C1 | sing | 1.51Å | 1.51Å | |
O2' | H2' | sing | 0.97Å | 0.95Å | |
C1 | C2 | sing | 1.53Å | 1.52Å | |
C1 | H1C1 | sing | 1.09Å | 1.10Å | |
C1 | H1C2 | sing | 1.09Å | 1.10Å | |
C2 | C3 | sing | 1.51Å | 1.54Å | |
C2 | H2C1 | sing | 1.09Å | 1.10Å | |
C2 | H2C2 | sing | 1.09Å | 1.10Å | |
C3 | C4 | doub | 1.32Å | 1.32Å | |
C3 | N3 | sing | 1.39Å | 1.46Å | |
C4 | C5 | sing | 1.51Å | 1.52Å | |
C4 | H4 | sing | 1.08Å | 1.06Å | |
C5 | H5C1 | sing | 1.09Å | 1.10Å | |
C5 | H5C2 | sing | 1.09Å | 1.10Å | |
C5 | H5C3 | sing | 1.09Å | 1.10Å | |
N3 | H3N1 | sing | 0.97Å | 0.99Å | |
N3 | H3N2 | sing | 0.97Å | 0.99Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1' | C1' | O2' | 120.1° | 120.0° |
O1' | C1' | C1 | 116.4° | 120.0° |
O2' | C1' | C1 | 123.6° | 120.0° |
C1' | O2' | H2' | 120.0° | 120.0° |
C1' | C1 | C2 | 111.7° | 109.5° |
C1' | C1 | H1C1 | 108.9° | 109.5° |
C1' | C1 | H1C2 | 108.2° | 109.4° |
C2 | C1 | H1C1 | 108.9° | 109.5° |
C2 | C1 | H1C2 | 108.2° | 109.4° |
C1 | C2 | C3 | 112.6° | 109.5° |
C1 | C2 | H2C1 | 108.7° | 109.5° |
C1 | C2 | H2C2 | 107.6° | 109.5° |
H1C1 | C1 | H1C2 | 111.0° | 109.5° |
C3 | C2 | H2C1 | 108.7° | 109.4° |
C3 | C2 | H2C2 | 107.6° | 109.5° |
C2 | C3 | C4 | 123.2° | 120.0° |
C2 | C3 | N3 | 122.0° | 120.0° |
H2C1 | C2 | H2C2 | 111.7° | 109.4° |
C4 | C3 | N3 | 114.7° | 120.0° |
C3 | C4 | C5 | 122.8° | 119.9° |
C3 | C4 | H4 | 118.6° | 120.0° |
C3 | N3 | H3N1 | 120.0° | 120.0° |
C3 | N3 | H3N2 | 120.0° | 120.0° |
C5 | C4 | H4 | 118.6° | 120.0° |
C4 | C5 | H5C1 | 109.5° | 109.5° |
C4 | C5 | H5C2 | 109.5° | 109.4° |
C4 | C5 | H5C3 | 109.4° | 109.5° |
H5C1 | C5 | H5C2 | 109.5° | 109.5° |
H5C1 | C5 | H5C3 | 109.5° | 109.5° |
H5C2 | C5 | H5C3 | 109.5° | 109.5° |
H3N1 | N3 | H3N2 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1' | C1' | O2' | C1 | 179.2° | 180.0° |
O1' | C1' | O2' | H2' | 180.0° | 0.1° |
O1' | C1' | C1 | C2 | 154.9° | 0.0° |
O1' | C1' | C1 | H1C1 | 34.5° | 120.1° |
O1' | C1' | C1 | H1C2 | 86.2° | 119.9° |
O2' | C1' | C1 | C2 | 25.9° | 180.0° |
O2' | C1' | C1 | H1C1 | 146.2° | 59.9° |
O2' | C1' | C1 | H1C2 | 93.0° | 60.1° |
C1 | C1' | O2' | H2' | 0.8° | 179.9° |
C1' | C1 | C2 | H1C1 | 120.3° | 120.1° |
C1' | C1 | C2 | H1C2 | 118.9° | 119.9° |
C1' | C1 | H1C1 | H1C2 | 119.0° | 120.0° |
C1' | C1 | C2 | C3 | 117.8° | 180.0° |
C1' | C1 | C2 | H2C1 | 2.6° | 60.0° |
C1' | C1 | C2 | H2C2 | 123.7° | 60.0° |
C2 | C1 | H1C1 | H1C2 | 119.0° | 120.0° |
C1 | C2 | C3 | H2C1 | 120.5° | 120.0° |
C1 | C2 | C3 | H2C2 | 118.5° | 120.1° |
C1 | C2 | H2C1 | H2C2 | 118.6° | 120.0° |
C1 | C2 | C3 | C4 | 144.2° | 90.0° |
C1 | C2 | C3 | N3 | 36.7° | 90.0° |
H1C1 | C1 | C2 | C3 | 121.8° | 60.0° |
H1C1 | C1 | C2 | H2C1 | 117.7° | 180.0° |
H1C1 | C1 | C2 | H2C2 | 3.4° | 60.1° |
H1C2 | C1 | C2 | C3 | 1.1° | 60.0° |
H1C2 | C1 | C2 | H2C1 | 121.6° | 60.0° |
H1C2 | C1 | C2 | H2C2 | 117.4° | 179.9° |
C3 | C2 | H2C1 | H2C2 | 118.6° | 120.0° |
C2 | C3 | C4 | N3 | 179.2° | 180.0° |
C2 | C3 | C4 | C5 | 0.1° | 0.0° |
C2 | C3 | C4 | H4 | 179.9° | 180.0° |
C2 | C3 | N3 | H3N1 | 0.0° | 0.1° |
C2 | C3 | N3 | H3N2 | 180.0° | 179.9° |
H2C1 | C2 | C3 | C4 | 95.4° | 150.0° |
H2C1 | C2 | C3 | N3 | 83.8° | 30.0° |
H2C2 | C2 | C3 | C4 | 25.7° | 30.1° |
H2C2 | C2 | C3 | N3 | 155.2° | 149.9° |
C3 | C4 | C5 | H4 | 180.0° | 180.0° |
C3 | C4 | C5 | H5C1 | 127.9° | 180.0° |
C3 | C4 | C5 | H5C2 | 112.1° | 60.0° |
C3 | C4 | C5 | H5C3 | 7.9° | 60.0° |
C4 | C3 | N3 | H3N1 | 179.2° | 179.9° |
C4 | C3 | N3 | H3N2 | 0.8° | 0.1° |
N3 | C3 | C4 | C5 | 179.1° | 179.9° |
N3 | C3 | C4 | H4 | 0.9° | 0.1° |
C3 | N3 | H3N1 | H3N2 | 180.0° | 179.8° |
C4 | C5 | H5C1 | H5C2 | 120.0° | 119.9° |
C4 | C5 | H5C1 | H5C3 | 119.9° | 120.0° |
C4 | C5 | H5C2 | H5C3 | 120.0° | 120.0° |
H4 | C4 | C5 | H5C1 | 52.1° | 0.0° |
H4 | C4 | C5 | H5C2 | 67.9° | 120.0° |
H4 | C4 | C5 | H5C3 | 172.1° | 120.0° |
H5C1 | C5 | H5C2 | H5C3 | 120.0° | 120.0° |