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SummaryGeometryRelated PDB entries

GE6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O08P01doub1.48Å1.52Å
O06P01sing1.61Å1.65Å
O06C05sing1.43Å1.33Å
C04O01sing1.44Å1.28Å
C04C05sing1.53Å1.56Å
C04C01sing1.54Å1.58Å
O01C03sing1.44Å1.61Å
O02C02sing1.43Å1.51Å
O03C01sing1.43Å1.38Å
P01O07sing1.61Å1.67Å
P01O09sing1.61Å1.53Å
O07P02sing1.61Å1.70Å
C01C02sing1.55Å1.49Å
C03C02sing1.54Å1.35Å
C03N02sing1.47Å1.43Å
O13P02doub1.48Å1.56Å
O15P03doub1.48Å1.51Å
P02O10sing1.61Å1.68Å
P02O14sing1.61Å1.49Å
N02C06sing1.35Å1.34Å
N02C10sing1.35Å1.33Å
O05C10doub1.22Å1.49Å
C06C07doub1.37Å1.39Å
O10P03sing1.61Å1.66Å
C10C08sing1.46Å1.40Å
P03O12sing1.61Å1.50Å
P03O11sing1.61Å1.44Å
C07F01sing1.35Å1.37Å
C07N03sing1.32Å1.33Å
C08N03doub1.33Å1.33Å
C08C09sing1.47Å1.57Å
N01C09sing1.35Å1.52Å
C09O04doub1.22Å1.19Å
C01H1sing1.09Å1.10Å
C02H2sing1.09Å1.10Å
C03H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C05H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C06H7sing1.08Å1.08Å
N01H10sing0.97Å1.00Å
N01H11sing0.97Å1.00Å
O02H12sing0.97Å0.95Å
O03H13sing0.97Å0.95Å
O09H14sing0.97Å0.95Å
O11H15sing0.97Å0.95Å
O12H16sing0.97Å0.95Å
O14H17sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O08P01O06110.2°109.5°
O08P01O07109.0°109.5°
O08P01O09109.0°109.5°
P01O06C05116.0°123.0°
O06P01O07109.7°109.5°
O06P01O09109.2°109.4°
O06C05C04110.3°109.5°
O06C05H5109.3°109.5°
O06C05H6109.3°109.5°
O01C04C05109.8°110.4°
O01C04C01106.2°104.8°
C04O01C03109.7°105.3°
O01C04H4114.0°110.4°
C05C04C01107.8°110.4°
C05C04H4109.5°110.3°
C04C05H5109.3°109.4°
C04C05H6109.3°109.5°
C04C01O03109.1°110.6°
C04C01C02105.5°104.0°
C04C01H1109.1°110.5°
C01C04H4109.3°110.5°
O01C03C02107.0°104.8°
O01C03N02111.2°110.4°
O01C03H3107.6°110.5°
O02C02C01109.1°110.5°
O02C02C03110.3°110.6°
O02C02H2109.4°110.4°
C02O02H12109.5°114.0°
O03C01C02110.5°110.5°
O03C01H1112.1°110.4°
C01O03H13109.5°114.0°
O07P01O09109.7°109.5°
P01O07P02122.7°134.0°
P01O09H14109.5°114.1°
O07P02O13110.0°109.5°
O07P02O10109.6°109.4°
O07P02O14108.9°109.5°
C01C02C03106.2°104.1°
C02C01H1110.3°110.5°
C01C02H2109.8°110.5°
C02C03N02109.9°110.4°
C03C02H2112.0°110.5°
C02C03H3111.2°110.4°
C03N02C06119.4°120.3°
C03N02C10119.6°120.3°
N02C03H3109.9°110.3°
O13P02O10109.4°109.4°
O13P02O14109.5°109.5°
O15P03O10109.4°109.5°
O15P03O12110.1°109.5°
O15P03O11109.9°109.5°
O10P02O14109.4°109.5°
P02O10P03122.8°134.0°
P02O14H17109.5°113.9°
C06N02C10121.0°119.3°
N02C06C07119.8°120.8°
N02C06H7120.1°119.6°
N02C10O05120.9°120.7°
N02C10C08118.8°118.6°
O05C10C08120.2°120.7°
C06C07F01120.2°119.2°
C06C07N03119.2°121.5°
C07C06H7120.1°119.6°
O10P03O12108.6°109.5°
O10P03O11108.9°109.5°
C10C08N03120.0°119.1°
C10C08C09120.4°120.5°
O12P03O11109.9°109.5°
P03O12H16109.5°114.0°
P03O11H15109.5°114.0°
F01C07N03120.6°119.3°
C07N03C08121.2°120.6°
N03C08C09119.6°120.4°
C08C09N01120.7°120.0°
C08C09O04118.9°120.0°
N01C09O04120.4°120.0°
C09N01H10120.0°120.0°
C09N01H11120.0°119.9°
H5C05H6109.4°109.5°
H10N01H11120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O08P01O06O07120.0°120.1°
O08P01O06O09119.7°120.0°
O08P01O06C05150.2°55.0°
O08P01O07O09119.3°120.0°
O08P01O07P02174.2°39.9°
O08P01O09H140.0°180.0°
P01O06C05C04169.1°180.0°
O06P01O07O09120.0°119.9°
O06P01O07P0265.1°160.0°
P01O06C05H570.8°60.0°
P01O06C05H648.9°60.0°
O06P01O09H14120.4°60.0°
O06C05C04O01127.7°66.4°
O06C05C04H5120.1°120.0°
O06C05C04H6120.1°120.0°
O06C05C04C01116.9°178.2°
C05O06P01O0789.8°175.0°
C05O06P01O0930.5°65.0°
O06C05C04H41.8°55.8°
O06C05H5H6119.6°120.0°
O01C04C05C01115.3°115.4°
O01C04C05H4125.9°122.3°
O01C04C01H4123.4°118.9°
O01C04C01O03135.2°142.7°
O01C04C01C0216.4°24.0°
C04O01C03C0211.2°40.5°
C04O01C03N02108.8°159.3°
O01C04C01H1102.1°94.7°
C04O01C03H3130.8°78.4°
O01C04C05H57.6°173.6°
O01C04C05H6112.1°53.6°
C05C04C01H4118.9°122.3°
C05C04O01C03120.2°159.3°
C05C04C01O03107.1°98.5°
C05C04C01C02134.1°142.8°
C05C04C01H115.6°24.1°
C04C05H5H6119.6°120.0°
C01C04O01C033.9°40.5°
C04C01C02O0295.3°118.8°
C04C01O03C02115.6°114.7°
C04C01O03H1120.9°122.7°
C04C01C02H1117.7°118.7°
C04C01C02C0323.6°0.0°
C04C01C02H2144.8°118.7°
C01C04C05H5122.9°58.1°
C01C04C05H63.2°61.8°
C04C01O03H13180.0°176.2°
O01C03C02O0296.9°142.7°
O01C03C02C0121.1°24.0°
O01C03C02N02120.8°118.8°
O01C03C02H3117.3°119.0°
O01C03N02H3119.0°122.4°
O01C03N02C0623.5°50.4°
O01C03N02C10157.3°129.6°
O01C03C02H2140.9°94.7°
C03O01C04H4116.4°78.4°
O02C02C01O0322.5°0.0°
O02C02C01C03118.9°118.8°
O02C02C01H2119.9°122.5°
O02C02C03H2122.1°122.6°
O02C02C03N02142.3°98.5°
O02C02C01H1147.0°122.5°
O02C02C03H320.4°23.7°
O03C01C02H1124.5°122.5°
O03C01C02C03141.4°118.8°
O03C01C02H297.4°122.5°
O03C01C04H411.8°23.8°
P01O07P02O1392.0°40.1°
P01O07P02O10147.7°160.0°
P01O07P02O1428.0°79.9°
O07P01O09H14119.4°59.9°
O09P01O07P0254.8°80.1°
O07P02O13O10120.4°120.0°
O07P02O13O14119.7°120.0°
O07P02O10O14119.4°120.0°
O07P02O10P0340.3°165.0°
O07P02O14H17120.3°60.0°
C01C02C03H2119.8°118.7°
C01C02C03N0299.7°142.8°
C01C02C03H3138.4°95.0°
C02C01C04H4106.9°94.9°
C01C02O02H12180.0°61.5°
C02C01O03H1364.4°61.5°
C02C03N02H3122.7°122.2°
C02C03N02C0694.8°65.0°
C02C03N02C1084.4°115.0°
C03C02C01H194.1°118.7°
C03C02O02H1263.7°176.2°
C03N02C06C10179.2°180.0°
C03N02C10O050.6°0.2°
C03N02C06C07179.6°180.0°
C03N02C10C08179.5°179.6°
N02C03C02H220.2°24.1°
C03N02C06H70.5°0.2°
O13P02O10O14120.0°120.0°
O13P02O10P03161.0°45.0°
O13P02O14H170.0°180.0°
O15P03O10P0252.9°45.0°
O15P03O10O12120.2°120.0°
O15P03O10O11120.1°120.0°
O15P03O12O11121.2°120.0°
O15P03O11H150.0°60.0°
O15P03O12H160.0°180.0°
P02O10P03O12173.1°75.0°
P02O10P03O1167.3°165.0°
O10P02O14H17119.9°60.0°
O14P02O10P0379.0°74.9°
C06N02C10O05179.8°179.7°
N02C06C07H7180.0°179.7°
C06N02C10C080.3°0.4°
N02C06C07F01179.8°179.7°
N02C06C07N030.2°0.3°
C06N02C03H3142.5°172.8°
N02C10O05C08179.9°179.3°
C10N02C06C070.4°0.0°
N02C10C08N030.1°0.6°
N02C10C08C09179.9°179.8°
C10N02C03H338.3°7.2°
C10N02C06H7179.7°179.8°
O05C10C08N03180.0°180.0°
O05C10C08C090.1°0.4°
C06C07F01N03180.0°180.0°
C06C07N03C080.0°0.0°
O10P03O12O11119.0°120.0°
O10P03O11H15119.9°180.0°
O10P03O12H16119.8°60.0°
C10C08N03C070.1°0.4°
C10C08N03C09179.9°179.6°
C10C08C09N011.2°179.6°
C10C08C09O04178.5°0.4°
O12P03O11H15121.3°60.0°
O11P03O12H16121.2°60.0°
F01C07N03C08180.0°180.0°
F01C07C06H70.2°0.0°
C07N03C08C09180.0°180.0°
N03C07C06H7179.8°180.0°
N03C08C09N01178.8°0.0°
N03C08C09O041.6°180.0°
C08C09N01O04179.7°180.0°
C08C09N01H10179.7°0.0°
C08C09N01H110.3°179.9°
C09N01H10H11180.0°180.0°
O04C09N01H100.0°180.0°
O04C09N01H11180.0°0.0°
H1C01C02H227.1°0.0°
H1C01C04H4134.5°146.4°
H1C01O03H1359.0°61.1°
H2C02C03H3101.8°146.3°
H2C02O02H1259.9°61.1°
H4C04C05H5118.3°64.2°
H4C04C05H6122.0°175.8°

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PDB entries from 2024-07-17

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