Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

GE3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C4sing1.53Å1.55Å
C5O5sing1.43Å1.46Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.11Å
C4O4sing1.43Å1.43Å
C4C3sing1.53Å1.58Å
C4C41sing1.53Å1.55Å
O4HO4sing0.97Å0.96Å
C3C2sing1.53Å1.57Å
C3N1sing1.47Å1.50Å
C3H3sing1.09Å1.11Å
C2C1sing1.53Å1.55Å
C2O2sing1.43Å1.42Å
C2H2sing1.09Å1.11Å
C1O1sing1.43Å1.45Å
C1O5sing1.43Å1.46Å
C1H1sing1.09Å1.10Å
O1HO1sing0.97Å0.95Å
O2HO2sing0.97Å0.96Å
N1C31sing1.47Å1.48Å
N1HN1sing1.01Å1.03Å
C31H311sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C31H313sing1.09Å1.10Å
C41H411sing1.09Å1.11Å
C41H412sing1.09Å1.11Å
C41H413sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4C5O5112.6°109.9°
C4C5H51110.7°109.4°
C4C5H52110.0°109.3°
C5C4O4107.5°109.5°
C5C4C3108.8°109.0°
C5C4C41108.1°109.5°
O5C5H51108.6°109.4°
O5C5H52109.3°109.4°
C5O5C1117.6°107.6°
H51C5H52105.4°109.4°
O4C4C3111.1°109.4°
O4C4C41107.3°109.7°
C4O4HO4106.0°106.9°
C3C4C41113.9°109.8°
C4C3C2110.0°108.9°
C4C3N1115.5°109.6°
C4C3H3106.2°109.7°
C4C41H411112.0°109.5°
C4C41H412111.8°109.5°
C4C41H413112.0°109.4°
C2C3N1113.5°109.6°
C2C3H3106.7°109.6°
C3C2C1110.0°109.0°
C3C2O2111.8°109.7°
C3C2H2109.8°109.6°
N1C3H3104.2°109.5°
C3N1C31119.1°106.8°
C3N1HN1109.3°106.7°
C1C2O2109.1°109.6°
C1C2H2107.7°109.4°
C2C1O1109.8°109.4°
C2C1O5110.0°109.8°
C2C1H1109.8°109.5°
O2C2H2108.4°109.6°
C2O2HO2106.0°106.8°
O1C1O5113.0°109.4°
O1C1H1107.2°109.4°
C1O1HO1109.8°106.8°
O5C1H1106.9°109.4°
C31N1HN1109.3°106.7°
N1C31H311110.9°109.4°
N1C31H312112.4°109.5°
N1C31H313109.8°109.5°
H311C31H312109.3°109.5°
H311C31H313107.2°109.5°
H312C31H313107.1°109.5°
H411C41H412106.8°109.5°
H411C41H413107.3°109.4°
H412C41H413106.6°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4C5O5H51123.0°120.1°
C4C5O5H52122.6°120.0°
C4C5H51H52118.9°119.7°
C5C4O4C3118.8°119.4°
C5C4O4C41116.0°120.2°
C5C4C3C41120.6°119.9°
C5C4O4HO4179.7°60.0°
C5C4C3C255.2°53.5°
C5C4C3N1174.8°173.4°
C5C4C3H359.9°66.3°
C4C5O5C153.6°67.5°
C5C4C41H41162.6°60.1°
C5C4C41H412177.6°60.0°
C5C4C41H41358.0°180.0°
O5C5H51H52117.0°119.8°
O5C5C4O468.5°58.6°
O5C5C4C351.8°61.0°
O5C5C4C41175.9°178.9°
C5O5C1C254.2°67.6°
C5O5C1O168.8°52.5°
C5O5C1H1173.4°172.3°
H51C5C4O453.3°61.5°
H51C5C4C3173.6°178.8°
H51C5C4C4162.3°58.7°
H51C5O5C1176.6°172.3°
H52C5C4O4169.3°178.7°
H52C5C4C370.4°59.0°
H52C5C4C4153.7°61.0°
H52C5O5C169.0°52.5°
O4C4C3C41121.3°120.4°
O4C4C3C262.9°66.2°
O4C4C3N167.1°53.6°
O4C4C3H3178.0°173.9°
O4C4C41H411178.2°60.1°
O4C4C41H41261.9°179.8°
O4C4C41H41357.6°59.8°
C3C4O4HO461.4°179.4°
C4C3C2N1131.0°119.9°
C4C3C2H3114.8°119.9°
C4C3N1H3116.1°120.4°
C4C3C2C157.8°53.6°
C4C3C2O2179.2°173.6°
C4C3C2H260.5°66.1°
C4C3N1C3171.5°150.3°
C4C3N1HN1161.9°36.6°
C3C4C41H41158.4°179.6°
C3C4C41H41261.5°59.6°
C3C4C41H413179.0°60.4°
C41C4O4HO463.7°60.1°
C41C4C3C2175.8°173.4°
C41C4C3N154.2°66.7°
C41C4C3H360.7°53.5°
C4C41H411H412122.7°120.1°
C4C41H411H413123.3°119.9°
C4C41H412H413122.7°120.0°
C2C3N1H3115.7°120.2°
C3C2C1O2122.9°120.0°
C3C2C1H2119.6°119.8°
C3C2O2H2121.1°120.3°
C3C2C1O170.1°58.8°
C3C2C1O554.9°61.2°
C3C2C1H1172.3°178.7°
C3C2O2HO259.2°180.0°
C2C3N1C3156.7°90.2°
C2C3N1HN169.9°156.0°
N1C3C2C1171.2°173.5°
N1C3C2O249.8°66.5°
N1C3C2H270.5°53.8°
C3N1C31HN1126.6°113.8°
C3N1C31H31167.5°180.0°
C3N1C31H31255.2°60.0°
C3N1C31H313174.2°60.0°
H3C3C2C157.0°66.3°
H3C3C2O264.4°53.7°
H3C3C2H2175.3°174.0°
H3C3N1C31172.4°30.0°
H3C3N1HN145.8°83.8°
C1C2O2H2117.0°120.1°
C2C1O1O5123.2°120.3°
C2C1O1H1119.2°119.9°
C2C1O5H1119.2°120.1°
C2C1O1HO1179.9°179.9°
C1C2O2HO2179.0°60.4°
O2C2C1O152.9°61.1°
O2C2C1O5177.8°178.8°
O2C2C1H164.8°58.7°
H2C2C1O1170.3°178.7°
H2C2C1O564.7°58.6°
H2C2C1H152.7°61.5°
H2C2O2HO261.9°59.7°
O1C1O5H1117.7°119.8°
O5C1O1HO156.7°59.6°
H1C1O1HO160.8°60.2°
N1C31H311H312124.5°120.0°
N1C31H311H313119.8°120.0°
N1C31H312H313120.6°120.0°
HN1N1C31H31159.1°66.2°
HN1N1C31H312178.2°53.8°
HN1N1C31H31359.2°173.8°
H311C31H312H313115.8°120.0°
H411C41H412H413114.4°120.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon