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GDU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.38Å
N1C6sing1.37Å1.39Å
N1C1Dsing1.46Å1.47Å
C2N3sing1.35Å1.36Å
C2O2doub1.21Å1.20Å
N3C4sing1.35Å1.39Å
N3HN3sing0.97Å1.02Å
C4C5sing1.42Å1.43Å
C4O4doub1.22Å1.23Å
C5C6doub1.35Å1.32Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
C1DC2Dsing1.55Å1.52Å
C1DO4Dsing1.44Å1.40Å
C1DH1Dsing1.09Å1.11Å
C2DO2Dsing1.43Å1.46Å
C2DC3Dsing1.55Å1.57Å
C2DH2Dsing1.09Å1.12Å
O2DHO2'sing0.97Å0.95Å
C3DC4Dsing1.54Å1.52Å
C3DO3Dsing1.43Å1.44Å
C3DH3Dsing1.09Å1.12Å
C4DO4Dsing1.44Å1.45Å
C4DC5Dsing1.53Å1.51Å
C4DH4Dsing1.09Å1.11Å
O3DHO3'sing0.97Å0.95Å
C5DO5Dsing1.43Å1.46Å
C5DH5'1sing1.09Å1.12Å
C5DH5'2sing1.09Å1.12Å
O5DPAsing1.61Å1.63Å
PAO1Adoub1.48Å1.49Å
PAO2Asing1.61Å1.48Å
PAO3Asing1.61Å1.67Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.58Å
PBO1Bdoub1.48Å1.49Å
PBO2Bsing1.61Å1.51Å
PBO3Bsing1.61Å1.63Å
O2BHOB2sing0.97Å0.95Å
O3BC1'sing1.43Å1.44Å
C1'C2'sing1.53Å1.52Å
C1'O5'sing1.43Å1.42Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.52Å
C2'O2'sing1.43Å1.43Å
C2'H2'sing1.09Å1.11Å
C3'C4'sing1.53Å1.53Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.11Å
C4'C5'sing1.53Å1.55Å
C4'O4'sing1.43Å1.42Å
C4'H4'sing1.09Å1.11Å
C5'C6'sing1.53Å1.52Å
C5'O5'sing1.43Å1.46Å
C5'H5'sing1.09Å1.11Å
C6'O6'sing1.43Å1.43Å
C6'H6'1sing1.09Å1.12Å
C6'H6'2sing1.09Å1.12Å
O2'HO2Asing0.97Å0.95Å
O3'HO3Asing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6120.5°120.6°
C2N1C1D119.5°119.7°
N1C2N3115.2°120.9°
N1C2O2124.5°119.5°
C6N1C1D120.1°119.7°
N1C6C5122.3°119.7°
N1C6H6121.8°120.2°
N1C1DC2D113.4°110.7°
N1C1DO4D110.9°110.6°
N1C1DH1D104.1°110.6°
N3C2O2120.3°119.6°
C2N3C4127.5°120.3°
C2N3HN3115.2°119.8°
C4N3HN3117.2°119.9°
N3C4C5113.3°119.4°
N3C4O4118.0°120.4°
C5C4O4128.7°120.2°
C4C5C6121.2°119.1°
C4C5H5123.6°120.4°
C6C5H5115.2°120.5°
C5C6H6116.0°120.1°
C2DC1DO4D103.6°103.5°
C2DC1DH1D111.3°110.6°
C1DC2DO2D113.6°110.9°
C1DC2DC3D103.1°102.1°
C1DC2DH2D113.5°110.9°
O4DC1DH1D113.8°110.6°
C1DO4DC4D108.0°107.0°
O2DC2DC3D115.8°110.9°
O2DC2DH2D100.1°110.8°
C2DO2DHO2'113.6°106.8°
C3DC2DH2D111.2°111.0°
C2DC3DC4D101.8°104.1°
C2DC3DO3D116.0°110.5°
C2DC3DH3D109.7°110.5°
C4DC3DO3D107.1°110.8°
C4DC3DH3D118.1°110.5°
C3DC4DO4D108.1°107.4°
C3DC4DC5D118.3°109.9°
C3DC4DH4D106.4°109.9°
O3DC3DH3D104.6°110.4°
C3DO3DHO3'115.9°106.8°
O4DC4DC5D115.1°109.9°
O4DC4DH4D110.3°109.8°
C5DC4DH4D97.6°109.9°
C4DC5DO5D110.0°109.5°
C4DC5DH5'1112.0°109.5°
C4DC5DH5'2112.0°109.4°
O5DC5DH5'1112.0°109.4°
O5DC5DH5'2112.0°109.5°
C5DO5DPA121.2°106.8°
H5'1C5DH5'298.4°109.5°
O5DPAO1A110.7°109.5°
O5DPAO2A113.9°109.5°
O5DPAO3A110.5°109.5°
O1APAO2A105.8°109.5°
O1APAO3A111.1°109.4°
O2APAO3A104.7°109.4°
PAO2AHOA2113.9°106.8°
PAO3APB138.6°106.9°
O3APBO1B109.5°109.5°
O3APBO2B114.0°109.5°
O3APBO3B107.7°109.5°
O1BPBO2B110.2°109.4°
O1BPBO3B111.0°109.5°
O2BPBO3B104.4°109.4°
PBO2BHOB2113.9°106.8°
PBO3BC1'118.0°106.9°
O3BC1'C2'109.1°109.4°
O3BC1'O5'111.2°109.4°
O3BC1'H1'107.7°109.4°
C2'C1'O5'106.8°109.8°
C2'C1'H1'112.1°109.4°
C1'C2'C3'110.9°109.0°
C1'C2'O2'113.7°109.6°
C1'C2'H2'104.6°109.6°
O5'C1'H1'110.0°109.4°
C1'O5'C5'113.6°107.6°
C3'C2'O2'106.7°109.6°
C3'C2'H2'112.0°109.5°
C2'C3'C4'107.1°108.6°
C2'C3'O3'104.9°109.6°
C2'C3'H3'114.5°109.6°
O2'C2'H2'109.1°109.5°
C2'O2'HO2A113.7°106.8°
C4'C3'O3'111.5°109.7°
C4'C3'H3'108.3°109.7°
C3'C4'C5'106.7°109.0°
C3'C4'O4'112.5°109.5°
C3'C4'H4'108.6°109.6°
O3'C3'H3'110.5°109.5°
C3'O3'HO3A104.9°106.8°
C5'C4'O4'107.2°109.7°
C5'C4'H4'113.7°109.4°
C4'C5'C6'114.7°109.4°
C4'C5'O5'114.6°109.7°
C4'C5'H5'100.6°109.5°
O4'C4'H4'108.1°109.6°
C4'O4'HO4'112.5°106.8°
C6'C5'O5'105.0°109.4°
C6'C5'H5'111.0°109.5°
C5'C6'O6'111.1°109.4°
C5'C6'H6'1111.6°109.5°
C5'C6'H6'2111.6°109.4°
O5'C5'H5'111.1°109.4°
O6'C6'H6'1111.6°109.5°
O6'C6'H6'2111.6°109.5°
C6'O6'HO6'111.1°106.8°
H6'1C6'H6'298.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1D179.3°179.6°
N1C2N3O2179.1°179.5°
N1C2N3C42.1°0.5°
N1C2N3HN3178.0°179.7°
C2N1C6C51.3°0.3°
C2N1C6H6178.7°179.8°
C2N1C1DC2D129.4°55.9°
C2N1C1DO4D114.5°58.2°
C2N1C1DH1D8.2°178.9°
C6N1C2N30.2°0.6°
C6N1C2O2178.9°180.0°
N1C6C5C40.4°0.1°
N1C6C5H6180.0°179.9°
N1C6C5H5179.6°180.0°
C6N1C1DC2D50.0°124.4°
C6N1C1DO4D66.2°121.4°
C6N1C1DH1D171.1°1.5°
C1DN1C2N3179.5°179.8°
C1DN1C2O20.4°0.3°
C1DN1C6C5179.4°180.0°
C1DN1C6H60.6°0.2°
N1C1DC2DO4D120.3°118.6°
N1C1DC2DH1D117.0°122.9°
N1C1DO4DH1D117.0°122.9°
N1C1DC2DO2D75.4°86.2°
N1C1DC2DC3D158.5°155.7°
N1C1DC2DH2D38.2°37.4°
N1C1DO4DC4D159.7°158.7°
C2N3C4HN3180.0°179.8°
C2N3C4C52.9°0.2°
C2N3C4O4178.3°179.7°
O2C2N3C4178.8°180.0°
O2C2N3HN31.1°0.2°
N3C4C5O4178.6°180.0°
N3C4C5C61.5°0.0°
N3C4C5H5178.5°180.0°
HN3N3C4C5177.2°180.0°
HN3N3C4O41.6°0.1°
C4C5C6H5180.0°180.0°
C4C5C6H6179.6°180.0°
O4C4C5C6179.9°179.9°
O4C4C5H50.1°0.0°
H5C5C6H60.4°0.1°
C2DC1DO4DH1D121.0°118.5°
C1DC2DO2DC3D119.1°112.7°
C1DC2DO2DH2D121.3°123.6°
C1DC2DC3DH2D121.9°118.2°
C1DC2DO2DHO2'180.0°180.0°
C1DC2DC3DC4D24.2°21.0°
C1DC2DC3DO3D91.7°98.0°
C1DC2DC3DH3D150.1°139.6°
C2DC1DO4DC4D37.7°40.0°
O4DC1DC2DO2D164.3°155.3°
O4DC1DC2DC3D38.2°37.1°
O4DC1DC2DH2D82.2°81.2°
C1DO4DC4DC3D22.0°26.4°
C1DO4DC4DC5D156.8°146.0°
C1DO4DC4DH4D94.0°93.1°
H1DC1DC2DO2D41.6°36.8°
H1DC1DC2DC3D84.4°81.4°
H1DC1DC2DH2D155.2°160.3°
H1DC1DO4DC4D83.3°78.5°
O2DC2DC3DH2D113.4°123.7°
O2DC2DC3DC4D148.9°139.2°
O2DC2DC3DO3D33.0°20.2°
O2DC2DC3DH3D85.2°102.2°
C3DC2DO2DHO2'60.9°67.3°
C2DC3DC4DO3D122.1°118.7°
C2DC3DC4DH3D120.2°118.6°
C2DC3DO3DH3D121.0°122.5°
C2DC3DC4DO4D2.8°1.9°
C2DC3DC4DC5D130.3°121.4°
C2DC3DC4DH4D121.3°117.5°
C2DC3DO3DHO3'180.0°61.5°
H2DC2DO2DHO2'58.7°56.4°
H2DC2DC3DC4D97.8°97.2°
H2DC2DC3DO3D146.4°143.9°
H2DC2DC3DH3D28.1°21.4°
C4DC3DO3DH3D126.2°122.7°
C3DC4DO4DC5D134.8°119.6°
C3DC4DO4DH4D116.0°119.5°
C3DC4DC5DH4D113.3°121.1°
C4DC3DO3DHO3'67.2°176.2°
C3DC4DC5DO5D95.8°179.7°
C3DC4DC5DH5'129.5°59.7°
C3DC4DC5DH5'2138.9°60.3°
O3DC3DC4DO4D119.3°120.6°
O3DC3DC4DC5D107.5°119.9°
O3DC3DC4DH4D0.8°1.2°
H3DC3DC4DO4D123.0°116.7°
H3DC3DC4DC5D10.1°2.8°
H3DC3DC4DH4D118.5°123.8°
H3DC3DO3DHO3'59.0°61.0°
O4DC4DC5DH4D116.7°120.9°
O4DC4DC5DO5D134.2°61.7°
O4DC4DC5DH5'1100.5°58.3°
O4DC4DC5DH5'28.9°178.3°
C4DC5DO5DH5'1125.3°120.0°
C4DC5DO5DH5'2125.3°120.0°
C4DC5DH5'1H5'2117.9°120.0°
C4DC5DO5DPA136.5°180.0°
H4DC4DC5DO5D17.5°59.3°
H4DC4DC5DH5'1142.7°179.3°
H4DC4DC5DH5'2107.8°60.8°
O5DC5DH5'1H5'2117.9°120.0°
C5DO5DPAO1A60.4°60.0°
C5DO5DPAO2A179.5°60.1°
C5DO5DPAO3A63.1°180.0°
H5'1C5DO5DPA11.2°60.0°
H5'2C5DO5DPA98.2°60.0°
O5DPAO1AO2A123.9°120.0°
O5DPAO1AO3A123.1°120.1°
O5DPAO2AO3A120.8°120.0°
O5DPAO2AHOA2180.0°60.0°
O5DPAO3APB19.3°180.0°
O1APAO2AO3A117.4°119.9°
O1APAO2AHOA258.1°180.0°
O1APAO3APB142.6°60.0°
O2APAO3APB103.7°60.0°
O3APAO2AHOA259.3°60.1°
PAO3APBO1B31.4°60.0°
PAO3APBO2B92.5°60.0°
PAO3APBO3B152.2°180.0°
O3APBO1BO2B126.1°120.0°
O3APBO1BO3B118.8°120.1°
O3APBO2BO3B117.2°120.0°
O3APBO2BHOB2180.0°60.0°
O3APBO3BC1'23.2°180.0°
O1BPBO2BO3B119.2°120.0°
O1BPBO2BHOB256.4°180.0°
O1BPBO3BC1'96.7°59.9°
O2BPBO3BC1'144.7°60.0°
O3BPBO2BHOB262.8°60.0°
PBO3BC1'C2'167.1°149.6°
PBO3BC1'O5'75.3°90.0°
PBO3BC1'H1'45.3°29.8°
O3BC1'C2'O5'120.3°120.1°
O3BC1'C2'H1'119.2°119.8°
O3BC1'O5'H1'119.2°119.7°
O3BC1'C2'C3'56.3°58.8°
O3BC1'C2'O2'63.9°61.1°
O3BC1'C2'H2'177.2°178.7°
O3BC1'O5'C5'62.2°52.5°
C2'C1'O5'H1'121.8°120.1°
C1'C2'C3'O2'124.3°119.9°
C1'C2'C3'H2'116.5°119.9°
C1'C2'O2'H2'116.3°120.2°
C1'C2'C3'C4'65.9°53.8°
C1'C2'C3'O3'175.6°173.7°
C1'C2'C3'H3'54.3°66.1°
C2'C1'O5'C5'56.7°67.6°
C1'C2'O2'HO2A180.0°60.0°
O5'C1'C2'C3'64.0°61.3°
O5'C1'C2'O2'175.8°178.7°
O5'C1'C2'H2'56.9°58.5°
C1'O5'C5'C4'54.7°67.6°
C1'O5'C5'C6'178.6°172.4°
C1'O5'C5'H5'58.6°52.5°
H1'C1'C2'C3'175.5°178.6°
H1'C1'C2'O2'55.3°58.7°
H1'C1'C2'H2'63.5°61.5°
H1'C1'O5'C5'178.5°172.3°
C3'C2'O2'H2'121.2°120.2°
C2'C3'C4'O3'114.2°119.8°
C2'C3'C4'H3'124.0°119.8°
C2'C3'O3'H3'123.9°120.3°
C2'C3'C4'C5'56.7°53.8°
C2'C3'C4'O4'60.6°66.2°
C2'C3'C4'H4'179.7°173.5°
C3'C2'O2'HO2A57.5°179.5°
C2'C3'O3'HO3A180.0°60.0°
O2'C2'C3'C4'169.9°173.7°
O2'C2'C3'O3'51.3°66.4°
O2'C2'C3'H3'70.0°53.9°
H2'C2'C3'C4'50.6°66.1°
H2'C2'C3'O3'68.0°53.8°
H2'C2'C3'H3'170.7°174.0°
H2'C2'O2'HO2A63.7°60.3°
C4'C3'O3'H3'120.5°120.5°
C3'C4'C5'O4'120.8°120.0°
C3'C4'C5'H4'119.8°119.8°
C3'C4'O4'H4'119.9°120.2°
C3'C4'C5'C6'174.3°178.6°
C3'C4'C5'O5'52.7°61.4°
C3'C4'C5'H5'66.6°58.7°
C4'C3'O3'HO3A64.4°179.2°
C3'C4'O4'HO4'180.0°60.0°
O3'C3'C4'C5'171.0°173.7°
O3'C3'C4'O4'53.6°53.6°
O3'C3'C4'H4'66.0°66.6°
H3'C3'C4'C5'67.3°66.0°
H3'C3'C4'O4'175.4°174.0°
H3'C3'C4'H4'55.7°53.7°
H3'C3'O3'HO3A56.1°60.3°
C5'C4'O4'H4'123.0°120.2°
C4'C5'C6'O5'126.7°120.2°
C4'C5'C6'H5'113.2°119.9°
C4'C5'O5'H5'113.2°120.1°
C4'C5'C6'O6'64.1°179.9°
C4'C5'C6'H6'1170.7°60.1°
C4'C5'C6'H6'261.2°59.9°
C5'C4'O4'HO4'62.9°179.6°
O4'C4'C5'C6'53.5°61.4°
O4'C4'C5'O5'68.1°58.6°
O4'C4'C5'H5'172.7°178.6°
H4'C4'C5'C6'66.0°58.9°
H4'C4'C5'O5'172.5°178.9°
H4'C4'C5'H5'53.2°61.1°
H4'C4'O4'HO4'60.1°60.2°
C6'C5'O5'H5'120.0°119.9°
C5'C6'O6'H6'1125.3°120.0°
C5'C6'O6'H6'2125.3°119.9°
C5'C6'H6'1H6'2117.5°120.0°
C5'C6'O6'HO6'180.0°180.0°
O5'C5'C6'O6'62.6°59.9°
O5'C5'C6'H6'162.6°60.1°
O5'C5'C6'H6'2172.1°179.8°
H5'C5'C6'O6'177.2°60.0°
H5'C5'C6'H6'157.5°180.0°
H5'C5'C6'H6'252.0°60.0°
O6'C6'H6'1H6'2117.5°120.0°
H6'1C6'O6'HO6'54.7°60.0°
H6'2C6'O6'HO6'54.7°60.0°

223532

PDB entries from 2024-08-07

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