Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

GDT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.35Å1.36Å
C1C12sing1.46Å1.48Å
C2C3sing1.46Å1.48Å
C3C4doub1.33Å1.37Å
C4C5sing1.51Å1.51Å
C5C6sing1.53Å1.52Å
C6C7sing1.53Å1.56Å
O37C12doub1.22Å1.25Å
C12N13sing1.35Å1.38Å
N13C14sing1.46Å1.52Å
C14C34sing1.53Å1.59Å
C14C15sing1.51Å1.55Å
C34C36sing1.53Å1.55Å
C34O35sing1.43Å1.45Å
C15O33doub1.21Å1.21Å
C15N16sing1.35Å1.30Å
N16C17sing1.47Å1.43Å
C17C31sing1.51Å1.52Å
C17C18sing1.53Å1.57Å
C31O32doub1.21Å1.26Å
C31N30sing1.36Å1.39Å
N30C28sing1.48Å1.47Å
C28C29sing1.53Å1.55Å
C28C27sing1.51Å1.52Å
C27C26doub1.33Å1.59Å
C26C24sing1.47Å1.52Å
C24O25doub1.22Å1.25Å
C24N23sing1.36Å1.36Å
N23C22sing1.48Å1.44Å
C22C21sing1.53Å1.54Å
C21C19sing1.53Å1.53Å
C19O20sing1.43Å1.42Å
C19C18sing1.53Å1.54Å
C7C8sing1.53Å1.55Å
C8C9sing1.53Å1.57Å
C9C10sing1.53Å1.59Å
C10C11sing1.53Å1.60Å
C1H1sing1.08Å1.08Å
C2H2sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C4H4sing1.08Å1.08Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
N13HN13sing0.97Å1.00Å
C14H14sing1.09Å1.10Å
C34H34sing1.09Å1.10Å
C36H36sing1.09Å1.10Å
C36H36Asing1.09Å1.10Å
C36H36Bsing1.09Å1.10Å
O35HO35sing0.97Å0.95Å
N16HN16sing0.97Å1.00Å
C17H17sing1.09Å1.10Å
N30HN30sing0.97Å1.00Å
C28H28sing1.09Å1.10Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C29H29Bsing1.09Å1.10Å
C27H27sing1.07Å1.08Å
C26H26sing1.08Å1.08Å
N23HN23sing0.97Å1.00Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C19H19sing1.09Å1.10Å
O20HO20sing0.97Å0.95Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C11H11Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C12124.1°120.0°
C1C2C3118.9°120.0°
C2C1H1117.9°120.0°
C1C2H2120.5°120.1°
C1C12O37117.6°120.0°
C1C12N13121.6°120.0°
C12C1H1117.9°120.0°
C2C3C4126.8°120.0°
C3C2H2120.5°120.0°
C2C3H3116.6°120.0°
C3C4C5118.0°120.0°
C4C3H3116.6°120.0°
C3C4H4121.0°120.0°
C4C5C6116.6°109.5°
C5C4H4121.0°120.0°
C4C5H5107.2°109.5°
C4C5H5A105.5°109.5°
C5C6C7111.3°109.5°
C6C5H5107.2°109.5°
C6C5H5A105.5°109.4°
C5C6H6108.9°109.4°
C5C6H6A108.4°109.4°
C6C7C8116.0°109.5°
C7C6H6108.9°109.5°
C7C6H6A108.5°109.5°
C6C7H7107.3°109.5°
C6C7H7A105.8°109.4°
O37C12N13120.8°120.0°
C12N13C14120.3°120.0°
C12N13HN13119.9°120.0°
N13C14C34114.5°109.5°
N13C14C15111.6°109.4°
C14N13HN13119.9°120.0°
N13C14H14105.3°109.5°
C34C14C15112.2°109.5°
C14C34C36112.2°109.4°
C14C34O35109.4°109.5°
C34C14H14104.6°109.5°
C14C34H34108.2°109.5°
C14C15O33119.9°120.0°
C14C15N16117.1°120.0°
C15C14H14108.0°109.4°
C36C34O35111.0°109.5°
C36C34H34106.5°109.5°
C34C36H36109.5°109.5°
C34C36H36A109.5°109.4°
C34C36H36B109.4°109.5°
O35C34H34109.5°109.4°
C34O35HO35109.5°114.0°
O33C15N16123.0°120.0°
C15N16C17121.5°120.0°
C15N16HN16119.2°120.0°
N16C17C31113.0°109.6°
N16C17C18110.0°109.6°
C17N16HN16119.3°120.0°
N16C17H17106.1°109.6°
C31C17C18107.7°108.8°
C17C31O32118.5°119.9°
C17C31N30118.2°120.1°
C31C17H17108.5°109.6°
C17C18C19116.4°110.0°
C18C17H17111.6°109.7°
C17C18H18107.2°109.4°
C17C18H18A105.6°109.4°
O32C31N30123.0°119.9°
C31N30C28121.0°116.9°
C31N30HN30119.5°121.6°
N30C28C29110.3°109.8°
N30C28C27107.1°107.5°
C28N30HN30119.5°121.5°
N30C28H28111.2°109.9°
C29C28C27111.5°109.9°
C29C28H28106.7°109.8°
C28C29H29109.5°109.4°
C28C29H29A109.4°109.5°
C28C29H29B109.4°109.5°
C28C27C26112.5°118.8°
C27C28H28110.0°109.9°
C28C27H27123.7°119.9°
C27C26C24111.8°121.7°
C26C27H27123.7°121.3°
C27C26H26124.1°119.3°
C26C24O25115.3°120.8°
C26C24N23125.9°118.4°
C24C26H26124.1°119.1°
O25C24N23118.7°120.8°
C24N23C22127.1°117.8°
C24N23HN23116.5°121.1°
N23C22C21109.9°109.1°
C22N23HN23116.4°121.1°
N23C22H22109.3°109.5°
N23C22H22A109.2°109.5°
C22C21C19114.8°110.0°
C21C22H22109.3°109.5°
C21C22H22A109.2°109.5°
C22C21H21107.7°109.4°
C22C21H21A106.5°109.4°
C21C19O20106.3°109.3°
C21C19C18110.4°110.2°
C19C21H21107.8°109.4°
C19C21H21A106.5°109.4°
C21C19H19110.9°109.3°
O20C19C18109.2°109.4°
O20C19H19112.1°109.3°
C19O20HO20109.5°114.0°
C18C19H19108.1°109.2°
C19C18H18107.2°109.4°
C19C18H18A105.6°109.4°
C7C8C9106.1°109.4°
C8C7H7107.4°109.5°
C8C7H7A105.8°109.5°
C7C8H8110.6°109.5°
C7C8H8A111.3°109.4°
C8C9C10111.6°109.4°
C9C8H8110.6°109.5°
C9C8H8A111.4°109.5°
C8C9H9108.8°109.5°
C8C9H9A108.3°109.5°
C9C10C11107.2°109.4°
C10C9H9108.7°109.5°
C10C9H9A108.3°109.5°
C9C10H10110.2°109.5°
C9C10H10A110.7°109.5°
C11C10H10110.2°109.4°
C11C10H10A110.7°109.4°
C10C11H11109.5°109.5°
C10C11H11A109.5°109.4°
C10C11H11B109.5°109.5°
H5C5H5A115.2°109.5°
H6C6H6A110.9°109.5°
H36C36H36A109.5°109.4°
H36C36H36B109.4°109.5°
H36AC36H36B109.5°109.4°
H29C29H29A109.4°109.5°
H29C29H29B109.5°109.5°
H29AC29H29B109.5°109.5°
H22C22H22A109.8°109.6°
H21C21H21A113.7°109.3°
H18C18H18A115.1°109.3°
H7C7H7A114.8°109.4°
H8C8H8A106.9°109.5°
H9C9H9A111.2°109.5°
H10C10H10A107.8°109.6°
H11C11H11A109.5°109.5°
H11C11H11B109.5°109.4°
H11AC11H11B109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C12H1180.0°179.8°
C1C2C3H2180.0°180.0°
C1C2C3C4179.6°180.0°
C2C1C12O370.9°0.0°
C2C1C12N13178.3°180.0°
C1C2C3H30.4°0.0°
C12C1C2C3178.6°180.0°
C1C12O37N13177.4°180.0°
C1C12N13C14176.4°180.0°
C12C1C2H21.4°0.0°
C1C12N13HN133.6°0.0°
C2C3C4H3180.0°180.0°
C2C3C4C5177.9°180.0°
C3C2C1H11.4°0.2°
C2C3C4H42.1°0.0°
C3C4C5H4180.0°180.0°
C3C4C5C6163.7°125.0°
C4C3C2H20.4°0.0°
C3C4C5H576.3°115.0°
C3C4C5H5A47.0°5.0°
C4C5C6H5120.0°120.0°
C4C5C6H5A116.7°120.0°
C4C5C6C7114.0°180.0°
C5C4C3H32.1°0.0°
C4C5H5H5A117.1°120.0°
C4C5C6H6126.0°59.9°
C4C5C6H6A5.2°60.0°
C5C6C7H6120.0°120.0°
C5C6C7H6A119.2°120.0°
C5C6C7C8179.8°180.0°
C6C5C4H416.3°55.0°
C6C5H5H5A117.1°120.0°
C5C6H6H6A119.2°119.9°
C5C6C7H760.2°60.0°
C5C6C7H7A62.8°59.9°
C6C7C8H7120.0°120.0°
C6C7C8H7A117.0°120.0°
C6C7C8C9179.5°180.0°
C7C6C5H55.9°60.0°
C7C6C5H5A129.2°60.0°
C7C6H6H6A119.3°120.0°
C6C7H7H7A117.3°119.9°
C6C7C8H860.5°60.0°
C6C7C8H8A58.2°60.0°
O37C12N13C140.9°0.0°
O37C12C1H1179.1°179.8°
O37C12N13HN13179.1°180.0°
C12N13C14HN13180.0°180.0°
C12N13C14C34171.7°85.0°
C12N13C14C1559.4°155.0°
N13C12C1H11.7°0.3°
C12N13C14H1457.4°35.1°
N13C14C34C15128.5°120.0°
N13C14C34H14114.7°120.1°
N13C14C15H14115.2°120.0°
N13C14C34C3649.9°59.3°
N13C14C34O3573.6°60.7°
N13C14C15O3337.6°12.4°
N13C14C15N16140.6°167.6°
N13C14C34H34167.2°179.3°
C34C14C15H14114.7°120.0°
C14C34C36O35122.7°120.0°
C14C34C36H34118.2°120.0°
C14C34O35H34118.4°120.0°
C34C14C15O3392.4°107.6°
C34C14C15N1689.3°72.4°
C34C14N13HN138.3°95.0°
C14C34C36H36163.6°67.0°
C14C34C36H36A43.5°173.0°
C14C34C36H36B76.5°53.1°
C14C34O35HO35110.4°60.0°
C15C14C34C36178.5°179.3°
C15C14C34O3554.9°59.3°
C14C15O33N16178.1°180.0°
C14C15N16C17177.9°175.1°
C15C14N13HN13120.6°25.0°
C15C14C34H3464.3°60.7°
C14C15N16HN162.1°4.9°
C36C34O35H34117.3°120.0°
C36C34C14H1464.8°60.8°
C34C36H36H36A120.0°120.0°
C34C36H36H36B120.0°120.1°
C34C36H36AH36B120.0°120.0°
C36C34O35HO3513.9°180.0°
O35C34C14H14171.7°179.2°
O35C34C36H3673.8°53.0°
O35C34C36H36A166.2°67.0°
O35C34C36H36B46.2°173.1°
O33C15N16C170.3°4.9°
O33C15C14H14152.8°132.4°
O33C15N16HN16179.8°175.1°
C15N16C17HN16180.0°180.0°
C15N16C17C3193.2°130.0°
C15N16C17C18146.4°110.7°
N16C15C14H1425.4°47.6°
C15N16C17H1725.5°9.7°
N16C17C31C18121.7°119.8°
N16C17C31H17117.4°120.3°
N16C17C18H17117.5°120.4°
N16C17C31O3237.0°169.9°
N16C17C31N30149.4°10.1°
N16C17C18C19150.8°13.3°
N16C17C18H1830.8°133.4°
N16C17C18H18A92.4°106.9°
C31C17C18H17118.9°119.9°
C17C31O32N30173.3°180.0°
C17C31N30C28172.1°164.5°
C31C17C18C1985.6°106.5°
C31C17N16HN1686.8°50.0°
C17C31N30HN308.0°15.5°
C31C17C18H18154.4°13.7°
C31C17C18H18A31.2°133.4°
C18C17C31O3284.7°50.2°
C18C17C31N3088.9°129.9°
C17C18C19C21165.4°77.9°
C17C18C19O2078.1°42.4°
C17C18C19H18120.0°120.1°
C17C18C19H18A116.8°120.1°
C18C17N16HN1633.6°69.2°
C17C18C19H1944.0°162.0°
C17C18H18H18A117.2°119.7°
O32C31N30C281.3°15.5°
O32C31C17H17154.3°69.7°
O32C31N30HN30178.7°164.5°
C31N30C28HN30180.0°180.0°
C31N30C28C29113.4°34.4°
C31N30C28C27125.0°85.1°
N30C31C17H1732.0°110.2°
C31N30C28H284.8°155.3°
N30C28C29C27118.9°118.1°
N30C28C29H28120.9°120.9°
N30C28C27H28120.9°119.6°
N30C28C27C2657.5°41.2°
N30C28C29H2950.2°78.5°
N30C28C29H29A69.7°161.5°
N30C28C29H29B170.2°41.5°
N30C28C27H27122.5°138.4°
C29C28C27H28118.2°120.9°
C29C28C27C26178.3°78.3°
C29C28N30HN3066.5°145.6°
C28C29H29H29A120.0°120.0°
C28C29H29H29B120.0°120.0°
C28C29H29AH29B120.0°120.0°
C29C28C27H271.7°102.2°
C28C27C26H27180.0°179.6°
C28C27C26C24128.4°178.8°
C27C28N30HN3055.0°94.9°
C27C28C29H29169.1°39.6°
C27C28C29H29A49.2°80.4°
C27C28C29H29B70.9°159.6°
C28C27C26H2651.6°2.5°
C27C26C24H26180.0°178.7°
C27C26C24O2528.9°9.0°
C27C26C24N23151.1°171.0°
C26C27C28H2863.5°160.8°
C26C24O25N23180.0°180.0°
C26C24N23C220.0°2.9°
C24C26C27H2751.6°0.8°
C26C24N23HN23180.0°177.1°
O25C24N23C22180.0°177.1°
O25C24C26H26151.1°169.6°
O25C24N23HN230.0°2.9°
C24N23C22HN23180.0°180.0°
C24N23C22C21108.2°60.3°
N23C24C26H2628.9°10.3°
C24N23C22H2211.8°179.8°
C24N23C22H22A132.0°59.6°
N23C22C21H22120.0°119.9°
N23C22C21H22A119.8°119.9°
N23C22C21C1953.9°179.4°
N23C22H22H22A119.8°120.1°
N23C22C21H21173.9°59.3°
N23C22C21H21A63.7°60.4°
C22C21C19H21120.0°120.2°
C22C21C19H21A117.6°120.1°
C22C21C19O20144.7°166.5°
C22C21C19C1897.0°73.2°
C21C22N23HN2371.8°119.7°
C21C22H22H22A119.8°120.2°
C22C21H21H21A117.8°119.7°
C22C21C19H1922.7°46.8°
C21C19O20C18119.0°120.8°
C21C19O20H19121.3°119.6°
C21C19C18H19121.4°120.1°
C19C21C22H2266.1°60.7°
C19C21C22H22A173.7°59.6°
C19C21H21H21A117.8°119.7°
C21C19O20HO20111.5°60.0°
C21C19C18H1874.6°42.3°
C21C19C18H18A48.6°162.0°
O20C19C18H19122.1°119.6°
O20C19C21H2195.3°73.3°
O20C19C21H21A27.1°46.3°
O20C19C18H1841.9°162.5°
O20C19C18H18A165.1°77.7°
C19C18C17H1733.3°133.6°
C18C19C21H2123.0°46.9°
C18C19C21H21A145.3°166.6°
C18C19O20HO207.5°179.2°
C19C18H18H18A117.1°119.8°
C7C8C9H8120.0°120.0°
C7C8C9H8A121.3°119.9°
C7C8C9C10178.4°180.0°
C8C7C6H659.8°60.0°
C8C7C6H6A61.0°60.0°
C8C7H7H7A117.3°120.1°
C7C8H8H8A121.4°120.0°
C7C8C9H961.6°60.0°
C7C8C9H9A59.3°60.1°
C8C9C10H9120.0°120.0°
C8C9C10H9A119.1°120.0°
C8C9C10C11179.5°180.0°
C9C8C7H759.5°60.0°
C9C8C7H7A63.5°60.0°
C9C8H8H8A121.4°120.0°
C8C9H9H9A119.2°120.0°
C8C9C10H1059.5°60.0°
C8C9C10H10A59.6°60.1°
C9C10C11H10120.0°119.9°
C9C10C11H10A120.9°120.0°
C10C9C8H858.5°60.0°
C10C9C8H8A60.3°60.0°
C10C9H9H9A119.1°120.0°
C9C10H10H10A120.9°120.1°
C9C10C11H1194.0°60.0°
C9C10C11H11A146.1°180.0°
C9C10C11H11B26.0°60.0°
C11C10C9H960.5°60.0°
C11C10C9H9A60.4°60.0°
C11C10H10H10A120.9°120.0°
C10C11H11H11A120.0°120.0°
C10C11H11H11B120.0°120.0°
C10C11H11AH11B120.0°120.0°
H1C1C2H2178.6°179.7°
H2C2C3H3179.6°180.0°
H3C3C4H4177.9°180.0°
H4C4C5H5103.7°65.0°
H4C4C5H5A133.0°175.0°
H5C5C6H6114.1°180.0°
H5C5C6H6A125.2°60.0°
H5AC5C6H69.2°60.0°
H5AC5C6H6A111.5°NaN°
H6C6C7H7179.8°180.0°
H6C6C7H7A57.2°60.1°
H6AC6C7H759.1°60.0°
H6AC6C7H7A178.0°179.9°
HN13N13C14H14122.6°145.0°
H14C14C34H3452.5°59.3°
H34C34C36H3645.3°173.0°
H34C34C36H36A74.7°53.0°
H34C34C36H36B165.3°66.9°
H34C34O35HO35131.2°60.0°
H36C36H36AH36B120.0°120.0°
HN16N16C17H17154.5°170.4°
H17C17C18H1886.7°106.2°
H17C17C18H18A150.1°13.5°
HN30N30C28H28175.2°24.7°
H28C28C29H2970.7°160.6°
H28C28C29H29A169.3°40.6°
H28C28C29H29B49.3°79.4°
H28C28C27H27116.5°18.8°
H29C29H29AH29B120.0°120.0°
H27C27C26H26128.4°177.9°
HN23N23C22H22168.2°0.2°
HN23N23C22H22A48.0°120.5°
H22C22C21H2153.9°179.2°
H22C22C21H21A176.3°59.5°
H22AC22C21H2166.3°60.6°
H22AC22C21H21A56.1°179.7°
H21C21C19H19142.7°167.0°
H21AC21C19H1994.9°73.3°
H19C19O20HO20127.2°59.6°
H19C19C18H18164.0°77.8°
H19C19C18H18A72.8°41.9°
H7C7C8H8179.5°NaN°
H7C7C8H8A61.8°60.0°
H7AC7C8H856.5°60.0°
H7AC7C8H8A175.2°180.0°
H8C8C9H9178.4°180.0°
H8C8C9H9A60.6°60.0°
H8AC8C9H959.7°60.0°
H8AC8C9H9A179.4°180.0°
H9C9C10H10179.5°180.0°
H9C9C10H10A60.4°59.9°
H9AC9C10H1059.6°59.9°
H9AC9C10H10A178.7°180.0°
H10C10C11H1126.0°60.0°
H10C10C11H11A93.9°60.1°
H10C10C11H11B146.0°180.0°
H10AC10C11H11145.2°180.0°
H10AC10C11H11A25.2°60.0°
H10AC10C11H11B94.9°60.0°
H11C11H11AH11B120.0°120.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon