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GDR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PBO3Asing1.61Å1.63Å
PBO1Bdoub1.48Å1.52Å
PBO2Bsing1.61Å1.53Å
PBO3Bsing1.61Å1.53Å
O3APAsing1.61Å1.63Å
O2BHOB2sing0.97Å0.95Å
O3BC1'sing1.43Å1.43Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.49Å
PAO5Dsing1.61Å1.60Å
O2AHOA2sing0.97Å0.95Å
O5DC5Dsing1.43Å1.43Å
C5DC4Dsing1.53Å1.51Å
C5DH5'sing1.09Å1.12Å
C5DH5''sing1.09Å1.12Å
C4DO4Dsing1.44Å1.46Å
C4DC3Dsing1.54Å1.53Å
C4DH4'sing1.09Å1.11Å
O4DC1Dsing1.44Å1.41Å
C1DN9sing1.46Å1.46Å
C1DC2Dsing1.55Å1.52Å
C1DH1'sing1.09Å1.11Å
N9C4sing1.37Å1.38ÅAromatic
N9C8sing1.36Å1.38ÅAromatic
C4N3sing1.34Å1.35Å
C4C5doub1.40Å1.38ÅAromatic
N3C2doub1.31Å1.33Å
C2N2sing1.37Å1.34Å
C2N1sing1.36Å1.37Å
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
N1C6sing1.35Å1.39Å
N1HN1sing0.97Å1.02Å
C6O6doub1.22Å1.24Å
C6C5sing1.41Å1.42Å
C5N7sing1.36Å1.39ÅAromatic
N7C8doub1.30Å1.31ÅAromatic
C8H8sing1.08Å1.10Å
C2DO2Dsing1.43Å1.41Å
C2DC3Dsing1.55Å1.52Å
C2DH2'sing1.09Å1.12Å
O2DHO2Asing0.97Å0.95Å
C3DO3Dsing1.43Å1.42Å
C3DH3'sing1.09Å1.11Å
O3DHO3Asing0.97Å0.95Å
C1'C2'sing1.53Å1.54Å
C1'O5'sing1.43Å1.44Å
C1'HC1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.53Å1.53Å
C2'HC2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.53Å1.52Å
C3'HC3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
C4'O4'sing1.43Å1.42Å
C4'C5'sing1.53Å1.54Å
C4'HC4'sing1.09Å1.12Å
O4'HO4'sing0.97Å0.95Å
C5'O5'sing1.43Å1.45Å
C5'C6'sing1.53Å1.52Å
C5'HC5'sing1.09Å1.11Å
C6'HC61sing1.09Å1.12Å
C6'HC62sing1.09Å1.11Å
C6'HC63sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3APBO1B109.0°109.4°
O3APBO2B108.9°109.5°
O3APBO3B107.4°109.5°
PBO3APA136.2°106.9°
O1BPBO2B110.5°109.4°
O1BPBO3B110.5°109.5°
O2BPBO3B110.5°109.5°
PBO2BHOB2109.0°106.8°
PBO3BC1'120.6°106.9°
O3APAO1A107.5°109.4°
O3APAO2A109.0°109.5°
O3APAO5D105.1°109.5°
O3BC1'C2'110.1°109.4°
O3BC1'O5'112.0°109.4°
O3BC1'HC1'107.7°109.4°
O1APAO2A119.0°109.5°
O1APAO5D108.7°109.5°
O2APAO5D106.6°109.5°
PAO2AHOA2109.0°106.8°
PAO5DC5D121.0°106.8°
O5DC5DC4D110.5°109.5°
O5DC5DH5'111.8°109.5°
O5DC5DH5''111.8°109.4°
C4DC5DH5'111.9°109.5°
C4DC5DH5''111.9°109.5°
C5DC4DO4D109.5°109.9°
C5DC4DC3D115.4°110.0°
C5DC4DH4'104.1°109.9°
H5'C5DH5''98.5°109.5°
O4DC4DC3D105.4°107.4°
O4DC4DH4'114.4°109.9°
C4DO4DC1D109.2°107.0°
C3DC4DH4'108.4°109.8°
C4DC3DC2D101.8°104.0°
C4DC3DO3D109.7°110.9°
C4DC3DH3'114.2°110.4°
O4DC1DN9109.0°110.7°
O4DC1DC2D105.4°103.5°
O4DC1DH1'115.6°110.6°
N9C1DC2D117.3°110.8°
N9C1DH1'103.1°110.5°
C1DN9C4127.0°126.3°
C1DN9C8125.5°126.2°
C2DC1DH1'106.9°110.6°
C1DC2DO2D109.7°111.0°
C1DC2DC3D100.1°102.1°
C1DC2DH2'116.1°110.9°
C4N9C8106.0°107.5°
N9C4N3126.1°134.2°
N9C4C5105.4°106.1°
N9C8N7113.4°109.8°
N9C8H8125.5°125.1°
N3C4C5128.4°119.7°
C4N3C2111.9°121.1°
C4C5C6118.9°118.6°
C4C5N7110.8°107.3°
N3C2N2120.0°119.0°
N3C2N1124.1°121.9°
N2C2N1115.9°119.0°
C2N2HN21120.0°120.0°
C2N2HN22108.5°120.0°
C2N1C6125.1°120.3°
C2N1HN1116.8°119.8°
HN21N2HN22108.5°120.0°
C6N1HN1118.1°119.9°
N1C6O6119.7°120.8°
N1C6C5111.6°118.4°
O6C6C5128.7°120.9°
C6C5N7130.3°134.1°
C5N7C8104.4°109.3°
N7C8H8121.1°125.1°
O2DC2DC3D111.9°110.9°
O2DC2DH2'105.2°110.8°
C2DO2DHO2A109.6°106.8°
C3DC2DH2'114.1°111.0°
C2DC3DO3D109.4°110.5°
C2DC3DH3'114.5°110.5°
O3DC3DH3'107.2°110.4°
C3DO3DHO3A109.6°106.9°
C2'C1'O5'110.6°109.8°
C2'C1'HC1'109.2°109.4°
C1'C2'O2'109.2°109.6°
C1'C2'C3'110.4°109.0°
C1'C2'HC2'109.0°109.5°
O5'C1'HC1'107.1°109.4°
C1'O5'C5'113.1°107.6°
O2'C2'C3'109.3°109.6°
O2'C2'HC2'110.0°109.6°
C2'O2'HO2'109.3°106.8°
C3'C2'HC2'108.9°109.5°
C2'C3'O3'110.0°109.6°
C2'C3'C4'109.6°108.6°
C2'C3'HC3'109.1°109.6°
O3'C3'C4'109.5°109.7°
O3'C3'HC3'109.2°109.6°
C3'O3'HO3'109.9°106.8°
C4'C3'HC3'109.5°109.7°
C3'C4'O4'109.7°109.5°
C3'C4'C5'109.9°109.0°
C3'C4'HC4'109.2°109.5°
O4'C4'C5'110.1°109.6°
O4'C4'HC4'109.1°109.6°
C4'O4'HO4'109.7°106.8°
C5'C4'HC4'108.8°109.7°
C4'C5'O5'110.3°109.8°
C4'C5'C6'111.8°109.4°
C4'C5'HC5'106.5°109.5°
O5'C5'C6'107.1°109.4°
O5'C5'HC5'111.4°109.3°
C6'C5'HC5'109.8°109.4°
C5'C6'HC61111.9°109.5°
C5'C6'HC62111.4°109.5°
C5'C6'HC63111.3°109.5°
HC61C6'HC62111.3°109.5°
HC61C6'HC63111.3°109.5°
HC62C6'HC6399.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3APBO1BO2B119.7°119.9°
O3APBO1BO3B117.8°120.0°
O3APBO2BO3B117.7°120.1°
O3APBO2BHOB2180.0°60.1°
O3APBO3BC1'39.4°180.0°
PBO3APAO1A152.9°60.0°
PBO3APAO2A76.9°60.0°
PBO3APAO5D37.1°180.0°
O1BPBO2BO3B122.6°120.0°
O1BPBO3APA25.9°60.0°
O1BPBO2BHOB260.3°180.0°
O1BPBO3BC1'158.2°60.0°
O2BPBO3APA94.7°59.9°
O2BPBO3BC1'79.3°60.0°
O3BPBO3APA145.6°180.0°
O3BPBO2BHOB262.3°60.0°
PBO3BC1'C2'143.3°149.7°
PBO3BC1'O5'93.2°90.0°
PBO3BC1'HC1'24.4°29.8°
O3APAO1AO2A124.4°120.0°
O3APAO1AO5D113.3°120.0°
O3APAO2AO5D113.1°120.1°
O3APAO2AHOA2180.0°60.0°
O3APAO5DC5D61.3°180.0°
O3BC1'C2'O5'124.3°120.1°
O3BC1'C2'HC1'118.1°119.8°
O3BC1'O5'HC1'117.9°119.8°
O3BC1'C2'O2'171.4°178.8°
O3BC1'C2'C3'68.4°58.8°
O3BC1'C2'HC2'51.1°61.0°
O3BC1'O5'C5'64.3°52.5°
O1APAO2AO5D123.3°120.0°
O1APAO2AHOA256.3°180.0°
O1APAO5DC5D53.6°60.0°
O2APAO5DC5D177.0°60.0°
O5DPAO2AHOA267.0°60.0°
PAO5DC5DC4D174.4°180.0°
PAO5DC5DH5'60.3°60.0°
PAO5DC5DH5''49.1°60.0°
O5DC5DC4DH5'125.3°120.0°
O5DC5DC4DH5''125.3°120.0°
O5DC5DH5'H5''117.7°119.9°
O5DC5DC4DO4D69.7°61.7°
O5DC5DC4DC3D48.9°179.7°
O5DC5DC4DH4'167.5°59.3°
C4DC5DH5'H5''117.7°120.0°
C5DC4DO4DC3D124.7°119.6°
C5DC4DO4DH4'116.4°121.0°
C5DC4DC3DH4'116.2°121.0°
C5DC4DO4DC1D121.2°145.9°
C5DC4DC3DC2D92.7°121.4°
C5DC4DC3DO3D151.5°119.8°
C5DC4DC3DH3'31.2°2.8°
H5'C5DC4DO4D165.0°58.3°
H5'C5DC4DC3D76.4°59.7°
H5'C5DC4DH4'42.2°179.3°
H5''C5DC4DO4D55.5°178.3°
H5''C5DC4DC3D174.2°60.3°
H5''C5DC4DH4'67.2°60.7°
O4DC4DC3DH4'122.9°119.4°
C4DO4DC1DN9149.8°158.8°
C4DO4DC1DC2D23.1°40.0°
C4DO4DC1DH1'94.7°78.4°
O4DC4DC3DC2D28.2°1.9°
O4DC4DC3DO3D87.6°120.6°
O4DC4DC3DH3'152.1°116.7°
C3DC4DO4DC1D3.5°26.4°
C4DC3DC2DC1D40.5°21.0°
C4DC3DC2DO2D156.6°139.3°
C4DC3DC2DO3D116.0°119.0°
C4DC3DC2DH3'123.7°118.5°
C4DC3DC2DH2'84.2°97.2°
C4DC3DO3DH3'124.5°122.7°
C4DC3DO3DHO3A180.0°176.2°
H4'C4DO4DC1D122.4°93.0°
H4'C4DC3DC2D151.1°117.6°
H4'C4DC3DO3D35.3°1.2°
H4'C4DC3DH3'85.0°123.9°
O4DC1DN9C2D119.5°114.2°
O4DC1DN9H1'123.3°122.9°
O4DC1DC2DH1'123.5°118.5°
O4DC1DN9C487.1°151.8°
O4DC1DN9C8108.5°28.6°
O4DC1DC2DO2D157.6°155.3°
O4DC1DC2DC3D39.9°37.1°
O4DC1DC2DH2'83.3°81.2°
N9C1DC2DH1'115.1°122.9°
C1DN9C4C8166.8°179.7°
C1DN9C4N314.0°0.9°
C1DN9C4C5166.5°179.9°
C1DN9C8N7166.6°180.0°
C1DN9C8H813.4°0.0°
N9C1DC2DO2D80.9°86.1°
N9C1DC2DC3D161.3°155.7°
N9C1DC2DH2'38.1°37.4°
C2DC1DN9C432.5°94.0°
C2DC1DN9C8131.9°85.6°
C1DC2DO2DC3D110.1°112.8°
C1DC2DO2DH2'125.5°123.6°
C1DC2DC3DH2'124.6°118.2°
C1DC2DO2DHO2A180.0°180.0°
C1DC2DC3DO3D75.5°98.0°
C1DC2DC3DH3'164.2°139.5°
H1'C1DN9C4149.6°28.9°
H1'C1DN9C814.8°151.5°
H1'C1DC2DO2D34.2°36.8°
H1'C1DC2DC3D83.6°81.4°
H1'C1DC2DH2'153.2°160.3°
N9C4N3C5179.3°178.9°
N9C4N3C2179.1°179.6°
N9C4C5C6179.8°179.8°
N9C4C5N70.1°0.4°
C4N9C8N70.4°0.3°
C4N9C8H8179.5°179.7°
C8N9C4N3179.1°179.5°
C8N9C4C50.3°0.4°
N9C8N7C50.4°0.0°
N9C8N7H8180.0°180.0°
C4N3C2N2179.3°179.7°
C4N3C2N10.6°0.4°
N3C4C5C60.3°0.6°
N3C4C5N7179.3°179.6°
C5C4N3C20.2°0.6°
C4C5C6N10.4°0.2°
C4C5C6O6179.5°179.7°
C4C5C6N7179.5°179.7°
C4C5N7C80.1°0.2°
N3C2N2N1179.9°179.9°
N3C2N2HN21180.0°0.0°
N3C2N2HN2254.7°179.9°
N3C2N1C60.6°0.0°
N3C2N1HN1179.5°179.9°
C2N2HN21HN22125.3°179.9°
N2C2N1C6179.4°179.9°
N2C2N1HN10.6°0.0°
N1C2N2HN210.0°180.0°
N1C2N2HN22125.4°0.0°
C2N1C6HN1179.9°179.9°
C2N1C6O6179.9°180.0°
C2N1C6C50.0°0.1°
N1C6O6C5179.8°179.9°
N1C6C5N7179.2°180.0°
HN1N1C6O60.2°0.1°
HN1N1C6C5180.0°179.9°
O6C6C5N71.0°0.1°
C6C5N7C8179.4°180.0°
C5N7C8H8179.6°180.0°
O2DC2DC3DH2'119.3°123.5°
O2DC2DC3DO3D40.6°20.3°
O2DC2DC3DH3'79.7°102.2°
C3DC2DO2DHO2A69.9°67.3°
C2DC3DO3DH3'124.7°122.5°
C2DC3DO3DHO3A69.2°61.4°
H2'C2DO2DHO2A54.5°56.4°
H2'C2DC3DO3D159.9°143.8°
H2'C2DC3DH3'39.5°21.3°
H3'C3DO3DHO3A55.5°61.1°
C2'C1'O5'HC1'118.9°120.1°
C1'C2'O2'C3'120.9°119.6°
C1'C2'O2'HC2'119.6°120.2°
C1'C2'C3'HC2'119.6°119.8°
C1'C2'O2'HO2'180.0°60.0°
C1'C2'C3'O3'175.2°173.6°
C1'C2'C3'C4'54.8°53.8°
C1'C2'C3'HC3'65.1°66.0°
C2'C1'O5'C5'58.9°67.6°
O5'C1'C2'O2'64.4°58.7°
O5'C1'C2'C3'55.9°61.3°
O5'C1'C2'HC2'175.4°178.9°
C1'O5'C5'C4'59.7°67.6°
C1'O5'C5'C6'178.4°172.3°
C1'O5'C5'HC5'58.4°52.5°
HC1'C1'C2'O2'53.3°61.4°
HC1'C1'C2'C3'173.5°178.6°
HC1'C1'C2'HC2'66.9°58.8°
HC1'C1'O5'C5'177.8°172.3°
O2'C2'C3'HC2'120.2°120.2°
O2'C2'C3'O3'55.1°53.7°
O2'C2'C3'C4'65.3°66.2°
O2'C2'C3'HC3'174.8°174.1°
C3'C2'O2'HO2'59.1°179.6°
C2'C3'O3'C4'120.4°119.2°
C2'C3'O3'HC3'119.6°120.4°
C2'C3'C4'HC3'119.6°119.7°
C2'C3'O3'HO3'180.0°60.1°
C2'C3'C4'O4'176.6°173.7°
C2'C3'C4'C5'55.5°53.8°
C2'C3'C4'HC4'63.8°66.1°
HC2'C2'O2'HO2'60.4°60.1°
HC2'C2'C3'O3'65.2°66.6°
HC2'C2'C3'C4'174.5°173.6°
HC2'C2'C3'HC3'54.5°53.8°
O3'C3'C4'HC3'119.7°120.5°
O3'C3'C4'O4'62.7°66.5°
O3'C3'C4'C5'176.1°173.6°
O3'C3'C4'HC4'56.8°53.7°
C4'C3'O3'HO3'59.5°179.2°
C3'C4'O4'C5'121.1°119.5°
C3'C4'O4'HC4'119.6°120.1°
C3'C4'C5'HC4'119.5°119.9°
C3'C4'O4'HO4'180.0°180.0°
C3'C4'C5'O5'57.2°61.4°
C3'C4'C5'C6'176.2°178.6°
C3'C4'C5'HC5'63.8°58.7°
HC3'C3'O3'HO3'60.4°60.3°
HC3'C3'C4'O4'57.0°53.9°
HC3'C3'C4'C5'64.2°65.9°
HC3'C3'C4'HC4'176.5°174.1°
O4'C4'C5'HC4'119.5°120.3°
O4'C4'C5'O5'178.2°178.8°
O4'C4'C5'C6'62.8°58.8°
O4'C4'C5'HC5'57.2°61.1°
C5'C4'O4'HO4'58.9°60.5°
C4'C5'O5'C6'121.9°120.0°
C4'C5'O5'HC5'118.1°120.2°
C4'C5'C6'HC5'118.1°120.0°
C4'C5'C6'HC61180.0°179.9°
C4'C5'C6'HC6254.7°59.9°
C4'C5'C6'HC6354.7°60.1°
HC4'C4'O4'HO4'60.4°59.8°
HC4'C4'C5'O5'62.3°58.5°
HC4'C4'C5'C6'56.7°61.6°
HC4'C4'C5'HC5'176.7°178.6°
O5'C5'C6'HC5'121.0°119.8°
O5'C5'C6'HC6159.1°59.8°
O5'C5'C6'HC62175.6°179.8°
O5'C5'C6'HC6366.2°60.1°
C5'C6'HC61HC62125.3°120.0°
C5'C6'HC61HC63125.3°120.0°
C5'C6'HC62HC63117.2°120.0°
HC5'C5'C6'HC6162.0°59.9°
HC5'C5'C6'HC6263.3°60.0°
HC5'C5'C6'HC63172.8°179.9°
HC61C6'HC62HC63117.2°120.0°

222415

PDB entries from 2024-07-10

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