GDO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.49Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| N9 | C8 | sing | 1.37Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| N3 | C4 | sing | 1.34Å | 1.35Å | |
| N3 | C2 | doub | 1.31Å | 1.32Å | |
| C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
| N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.42Å | |
| C2 | N2 | sing | 1.37Å | 1.34Å | |
| C2 | N1 | sing | 1.36Å | 1.37Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| P | OP3 | sing | 1.61Å | 1.63Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| C8 | H2 | sing | 1.08Å | 1.08Å | |
| N2 | H3 | sing | 0.97Å | 1.00Å | |
| N2 | H4 | sing | 0.97Å | 1.00Å | |
| OP2 | H5 | sing | 0.97Å | 0.95Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| C3' | H10 | sing | 1.09Å | 1.10Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| O2' | H12 | sing | 0.97Å | 0.95Å | |
| C1' | H13 | sing | 1.09Å | 1.10Å | |
| OP3 | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | O5' | 108.3° | 109.4° |
| OP1 | P | OP2 | 118.8° | 109.4° |
| OP1 | P | OP3 | 106.7° | 109.5° |
| C4' | C5' | O5' | 110.7° | 109.5° |
| C5' | C4' | C3' | 116.0° | 110.6° |
| C5' | C4' | O4' | 110.1° | 110.6° |
| C4' | C5' | H6 | 109.2° | 109.5° |
| C4' | C5' | H7 | 109.2° | 109.5° |
| C5' | C4' | H8 | 108.6° | 110.6° |
| C5' | O5' | P | 122.7° | 123.1° |
| O5' | C5' | H6 | 109.2° | 109.4° |
| O5' | C5' | H7 | 109.2° | 109.5° |
| O2' | C2' | C3' | 114.1° | 110.5° |
| O2' | C2' | C1' | 111.8° | 110.5° |
| O2' | C2' | H11 | 110.7° | 110.6° |
| C2' | O2' | H12 | 109.5° | 114.0° |
| C4' | C3' | C2' | 102.1° | 102.1° |
| C3' | C4' | O4' | 104.1° | 103.5° |
| C3' | C4' | H8 | 108.5° | 110.7° |
| C4' | C3' | H9 | 111.3° | 110.9° |
| C4' | C3' | H10 | 111.3° | 110.9° |
| C3' | C2' | C1' | 101.8° | 104.2° |
| C2' | C3' | H9 | 111.3° | 110.9° |
| C2' | C3' | H10 | 111.3° | 110.9° |
| C3' | C2' | H11 | 109.1° | 110.5° |
| C4' | O4' | C1' | 109.5° | 107.0° |
| O4' | C4' | H8 | 109.3° | 110.6° |
| O5' | P | OP2 | 103.0° | 109.5° |
| O5' | P | OP3 | 108.8° | 109.5° |
| C2' | C1' | O4' | 107.6° | 107.3° |
| C2' | C1' | N9 | 111.9° | 109.9° |
| C1' | C2' | H11 | 109.0° | 110.5° |
| C2' | C1' | H13 | 108.7° | 109.9° |
| OP2 | P | OP3 | 110.8° | 109.5° |
| P | OP2 | H5 | 109.5° | 114.0° |
| O4' | C1' | N9 | 108.8° | 109.9° |
| O4' | C1' | H13 | 110.2° | 109.9° |
| C1' | N9 | C8 | 127.8° | 126.2° |
| C1' | N9 | C4 | 125.8° | 126.3° |
| N9 | C1' | H13 | 109.6° | 110.0° |
| C8 | N9 | C4 | 106.3° | 107.5° |
| N9 | C8 | N7 | 113.1° | 109.8° |
| N9 | C8 | H2 | 123.4° | 125.1° |
| N9 | C4 | N3 | 125.9° | 134.2° |
| N9 | C4 | C5 | 105.4° | 106.1° |
| C8 | N7 | C5 | 104.4° | 109.3° |
| N7 | C8 | H2 | 123.5° | 125.2° |
| C4 | N3 | C2 | 112.0° | 121.1° |
| N3 | C4 | C5 | 128.7° | 119.7° |
| N3 | C2 | N2 | 119.8° | 119.0° |
| N3 | C2 | N1 | 124.0° | 121.9° |
| C4 | C5 | N7 | 110.7° | 107.3° |
| C4 | C5 | C6 | 118.8° | 118.6° |
| N7 | C5 | C6 | 130.5° | 134.1° |
| C5 | C6 | N1 | 111.6° | 118.3° |
| C5 | C6 | O6 | 128.6° | 120.8° |
| N2 | C2 | N1 | 116.2° | 119.1° |
| C2 | N2 | H3 | 120.0° | 120.0° |
| C2 | N2 | H4 | 120.0° | 120.0° |
| C2 | N1 | C6 | 125.0° | 120.4° |
| C2 | N1 | H1 | 117.5° | 119.8° |
| N1 | C6 | O6 | 119.9° | 120.9° |
| C6 | N1 | H1 | 117.5° | 119.8° |
| P | OP3 | H14 | 109.5° | 114.0° |
| H3 | N2 | H4 | 120.0° | 120.0° |
| H6 | C5' | H7 | 109.5° | 109.4° |
| H9 | C3' | H10 | 109.5° | 110.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | O5' | C5' | 74.0° | 55.0° |
| OP1 | P | O5' | OP2 | 126.7° | 120.0° |
| OP1 | P | O5' | OP3 | 115.6° | 120.0° |
| OP1 | P | OP2 | OP3 | 124.1° | 120.0° |
| OP1 | P | OP2 | H5 | 0.0° | 60.0° |
| OP1 | P | OP3 | H14 | 0.0° | 180.0° |
| C4' | C5' | O5' | H6 | 120.2° | 120.0° |
| C4' | C5' | O5' | H7 | 120.2° | 120.1° |
| C5' | C4' | C3' | O4' | 121.1° | 118.5° |
| C5' | C4' | C3' | H8 | 122.5° | 122.9° |
| C5' | C4' | C3' | C2' | 158.0° | 155.5° |
| C5' | C4' | O4' | H8 | 119.2° | 122.9° |
| C4' | C5' | O5' | P | 161.9° | 180.0° |
| C5' | C4' | O4' | C1' | 148.2° | 158.6° |
| C4' | C5' | H6 | H7 | 119.4° | 120.0° |
| C5' | C4' | C3' | H9 | 39.3° | 37.4° |
| C5' | C4' | C3' | H10 | 83.2° | 86.3° |
| O5' | C5' | C4' | C3' | 49.3° | 179.5° |
| O5' | C5' | C4' | O4' | 68.6° | 66.4° |
| C5' | O5' | P | OP2 | 159.3° | 175.0° |
| C5' | O5' | P | OP3 | 41.6° | 65.0° |
| O5' | C5' | H6 | H7 | 119.5° | 120.0° |
| O5' | C5' | C4' | H8 | 171.8° | 56.5° |
| O2' | C2' | C3' | C4' | 84.4° | 97.8° |
| O2' | C2' | C3' | C1' | 120.5° | 118.7° |
| O2' | C2' | C3' | H11 | 124.4° | 122.7° |
| O2' | C2' | C1' | H11 | 122.7° | 122.7° |
| O2' | C2' | C1' | O4' | 98.9° | 120.7° |
| O2' | C2' | C1' | N9 | 141.7° | 119.9° |
| O2' | C2' | C3' | H9 | 156.8° | 144.0° |
| O2' | C2' | C3' | H10 | 34.4° | 20.4° |
| O2' | C2' | C1' | H13 | 20.5° | 1.3° |
| C4' | C3' | C2' | H9 | 118.8° | 118.2° |
| C4' | C3' | C2' | H10 | 118.8° | 118.2° |
| C3' | C4' | O4' | H8 | 115.8° | 118.6° |
| C4' | C3' | C2' | C1' | 36.1° | 20.9° |
| C3' | C4' | O4' | C1' | 23.2° | 40.1° |
| C3' | C4' | C5' | H6 | 169.5° | 60.6° |
| C3' | C4' | C5' | H7 | 70.9° | 59.4° |
| C4' | C3' | H9 | H10 | 123.5° | 123.7° |
| C4' | C3' | C2' | H11 | 151.2° | 139.5° |
| C2' | C3' | C4' | O4' | 36.9° | 37.0° |
| C3' | C2' | C1' | H11 | 115.2° | 118.7° |
| C3' | C2' | C1' | O4' | 23.3° | 2.0° |
| C3' | C2' | C1' | N9 | 96.2° | 121.5° |
| C2' | C3' | C4' | H8 | 79.5° | 81.5° |
| C2' | C3' | H9 | H10 | 123.4° | 123.6° |
| C3' | C2' | O2' | H12 | 180.0° | 61.5° |
| C3' | C2' | C1' | H13 | 142.6° | 117.4° |
| C4' | O4' | C1' | C2' | 0.3° | 26.5° |
| C4' | O4' | C1' | N9 | 121.1° | 146.0° |
| O4' | C4' | C5' | H6 | 51.6° | 53.5° |
| O4' | C4' | C5' | H7 | 171.2° | 173.5° |
| O4' | C4' | C3' | H9 | 81.8° | 81.1° |
| O4' | C4' | C3' | H10 | 155.7° | 155.2° |
| C4' | O4' | C1' | H13 | 118.6° | 92.9° |
| O5' | P | OP2 | OP3 | 116.2° | 120.0° |
| O5' | P | OP2 | H5 | 119.6° | 180.0° |
| P | O5' | C5' | H6 | 41.7° | 60.0° |
| P | O5' | C5' | H7 | 77.9° | 59.9° |
| O5' | P | OP3 | H14 | 116.6° | 60.0° |
| C2' | C1' | O4' | N9 | 121.4° | 119.4° |
| C2' | C1' | O4' | H13 | 118.3° | 119.4° |
| C2' | C1' | N9 | H13 | 120.6° | 121.1° |
| C2' | C1' | N9 | C8 | 96.0° | 94.3° |
| C2' | C1' | N9 | C4 | 80.9° | 85.7° |
| C1' | C2' | C3' | H9 | 82.7° | 97.3° |
| C1' | C2' | C3' | H10 | 154.9° | 139.1° |
| C1' | C2' | O2' | H12 | 65.3° | 176.3° |
| OP2 | P | OP3 | H14 | 130.8° | 60.0° |
| O4' | C1' | N9 | H13 | 120.6° | 121.1° |
| O4' | C1' | N9 | C8 | 22.8° | 23.5° |
| O4' | C1' | N9 | C4 | 160.4° | 156.5° |
| C1' | O4' | C4' | H8 | 92.6° | 78.6° |
| O4' | C1' | C2' | H11 | 138.5° | 116.7° |
| C1' | N9 | C8 | C4 | 177.4° | 180.0° |
| C1' | N9 | C8 | N7 | 178.0° | 179.8° |
| C1' | N9 | C4 | N3 | 2.4° | 0.4° |
| C1' | N9 | C4 | C5 | 178.1° | 180.0° |
| C1' | N9 | C8 | H2 | 2.0° | 0.2° |
| N9 | C1' | C2' | H11 | 19.0° | 2.8° |
| N9 | C8 | N7 | H2 | 180.0° | 179.6° |
| C8 | N9 | C4 | N3 | 179.8° | 179.7° |
| C8 | N9 | C4 | C5 | 0.7° | 0.0° |
| N9 | C8 | N7 | C5 | 0.3° | 0.3° |
| C8 | N9 | C1' | H13 | 143.4° | 144.6° |
| C4 | N9 | C8 | N7 | 0.6° | 0.2° |
| N9 | C4 | N3 | C5 | 179.4° | 179.6° |
| N9 | C4 | N3 | C2 | 179.3° | 179.7° |
| N9 | C4 | C5 | N7 | 0.5° | 0.2° |
| N9 | C4 | C5 | C6 | 179.5° | 179.7° |
| C4 | N9 | C8 | H2 | 179.3° | 179.8° |
| C4 | N9 | C1' | H13 | 39.8° | 35.4° |
| C8 | N7 | C5 | C4 | 0.1° | 0.4° |
| C8 | N7 | C5 | C6 | 179.9° | 179.6° |
| N3 | C4 | C5 | N7 | 180.0° | 179.9° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| C4 | N3 | C2 | N2 | 180.0° | 180.0° |
| C4 | N3 | C2 | N1 | 0.3° | 0.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.1° |
| N3 | C2 | N2 | N1 | 179.8° | 180.0° |
| N3 | C2 | N1 | C6 | 0.3° | 0.0° |
| N3 | C2 | N1 | H1 | 179.7° | 179.9° |
| N3 | C2 | N2 | H3 | 0.0° | 0.0° |
| N3 | C2 | N2 | H4 | 180.0° | 180.0° |
| C4 | C5 | N7 | C6 | 179.9° | 180.0° |
| C4 | C5 | C6 | N1 | 0.0° | 0.0° |
| C4 | C5 | C6 | O6 | 179.8° | 180.0° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C6 | O6 | 0.2° | 0.0° |
| C5 | N7 | C8 | H2 | 179.6° | 180.0° |
| C5 | C6 | N1 | C2 | 0.1° | 0.0° |
| C5 | C6 | N1 | O6 | 179.8° | 180.0° |
| C5 | C6 | N1 | H1 | 179.9° | 179.9° |
| N2 | C2 | N1 | C6 | 179.9° | 180.0° |
| N2 | C2 | N1 | H1 | 0.1° | 0.1° |
| C2 | N2 | H3 | H4 | 180.0° | 180.0° |
| C2 | N1 | C6 | H1 | 180.0° | 179.9° |
| C2 | N1 | C6 | O6 | 179.7° | 179.9° |
| N1 | C2 | N2 | H3 | 179.8° | 180.0° |
| N1 | C2 | N2 | H4 | 0.2° | 0.0° |
| O6 | C6 | N1 | H1 | 0.3° | 0.0° |
| OP3 | P | OP2 | H5 | 124.2° | 60.0° |
| H6 | C5' | C4' | H8 | 68.1° | 176.4° |
| H7 | C5' | C4' | H8 | 51.6° | 63.6° |
| H8 | C4' | C3' | H9 | 161.8° | 160.3° |
| H8 | C4' | C3' | H10 | 39.3° | 36.6° |
| H9 | C3' | C2' | H11 | 32.4° | 21.4° |
| H10 | C3' | C2' | H11 | 90.0° | 102.3° |
| H11 | C2' | O2' | H12 | 56.5° | 61.1° |
| H11 | C2' | C1' | H13 | 102.2° | 123.9° |
