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GDG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N39C35sing1.37Å1.40Å
C35N36doub1.32Å1.43Å
C35N34sing1.36Å1.47Å
N36C37sing1.34Å1.41Å
N34C04sing1.37Å1.45Å
O33C07sing1.43Å1.52Å
C37O38doub1.22Å1.21Å
C37C03sing1.47Å1.50Å
C04C03doub1.39Å1.40ÅAromatic
C04N05sing1.36Å1.35ÅAromatic
C03N02sing1.35Å1.37ÅAromatic
C07C06sing1.54Å1.29Å
C07C08sing1.55Å1.50Å
O32C08sing1.43Å1.37Å
N05C06sing1.47Å1.43Å
N05C01sing1.36Å1.33ÅAromatic
C06O10sing1.44Å1.60Å
N02C01doub1.30Å1.34ÅAromatic
C08C09sing1.54Å1.56Å
O10C09sing1.44Å1.25Å
C09C11sing1.53Å1.56Å
C11O12sing1.43Å1.41Å
O12P13sing1.61Å1.59Å
O14P13doub1.48Å1.50Å
P13O15sing1.61Å1.50Å
P13O16sing1.61Å1.60Å
O29C24sing1.43Å1.44Å
O16P17sing1.61Å1.61Å
C27C25sing1.53Å1.48Å
C27O28sing1.43Å1.41Å
C25C24sing1.53Å1.53Å
C25O26sing1.43Å1.50Å
O18P17doub1.48Å1.51Å
C24C23sing1.53Å1.49Å
P17O19sing1.61Å1.53Å
P17O20sing1.61Å1.63Å
O26C21sing1.43Å1.48Å
C23O30sing1.43Å1.46Å
C23C22sing1.53Å1.52Å
O20C21sing1.43Å1.45Å
C21C22sing1.53Å1.54Å
C22O31sing1.43Å1.41Å
C21H1sing1.09Å1.10Å
C22H2sing1.09Å1.10Å
C24H3sing1.09Å1.10Å
C01H4sing1.08Å1.08Å
C06H5sing1.09Å1.10Å
C07H6sing1.09Å1.10Å
C08H7sing1.09Å1.10Å
C09H8sing1.09Å1.10Å
C11H9sing1.09Å1.10Å
C11H10sing1.09Å1.10Å
O15H11sing0.97Å0.95Å
O19H12sing0.97Å0.95Å
C23H13sing1.09Å1.10Å
C25H14sing1.09Å1.10Å
C27H15sing1.09Å1.10Å
C27H16sing1.09Å1.10Å
O28H17sing0.97Å0.95Å
O29H18sing0.97Å0.95Å
O30H19sing0.97Å0.95Å
O31H20sing0.97Å0.95Å
O32H21sing0.97Å0.95Å
O33H22sing0.97Å0.95Å
N34H23sing0.97Å1.00Å
N39H24sing0.97Å1.00Å
N39H25sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N39C35N36120.2°118.8°
N39C35N34121.1°118.7°
C35N39H24120.0°120.0°
C35N39H25120.0°120.0°
N36C35N34118.7°122.5°
C35N36C37122.2°121.4°
C35N34C04119.2°120.5°
C35N34H23120.4°119.8°
N36C37O38119.3°120.7°
N36C37C03119.4°118.6°
N34C04C03122.0°118.9°
N34C04N05131.2°134.7°
C04N34H23120.4°119.7°
O33C07C06110.0°110.5°
O33C07C08111.9°110.5°
O33C07H6109.6°110.5°
C07O33H22109.5°114.0°
O38C37C03121.3°120.7°
C37C03C04118.4°118.1°
C37C03N02135.3°134.4°
C03C04N05106.8°106.4°
C04C03N02106.3°107.4°
C04N05C06122.0°126.3°
C04N05C01109.3°107.5°
C03N02C01108.6°109.1°
C06C07C08102.1°104.1°
C07C06N05112.7°110.4°
C07C06O10107.3°104.8°
C07C06H5111.6°110.5°
C06C07H6113.2°110.6°
C07C08O32112.7°110.5°
C07C08C09103.0°104.1°
C08C07H6109.9°110.5°
C07C08H7110.0°110.5°
O32C08C09109.4°110.5°
O32C08H7112.0°110.5°
C08O32H21109.5°114.0°
C06N05C01128.7°126.2°
N05C06O10108.4°110.4°
N05C06H5109.3°110.3°
N05C01N02108.9°109.5°
N05C01H4125.5°125.2°
C06O10C09106.2°105.3°
O10C06H5107.3°110.4°
N02C01H4125.5°125.2°
C08C09O10107.6°104.8°
C08C09C11108.3°110.4°
C09C08H7109.3°110.6°
C08C09H8108.9°110.5°
O10C09C11109.4°110.3°
O10C09H8113.7°110.5°
C09C11O12102.9°109.5°
C11C09H8108.9°110.3°
C09C11H9111.1°109.4°
C09C11H10111.1°109.5°
C11O12P13119.3°123.0°
O12C11H9111.1°109.5°
O12C11H10111.1°109.5°
O12P13O14106.3°109.5°
O12P13O15110.1°109.5°
O12P13O16110.0°109.5°
O14P13O15111.6°109.5°
O14P13O16109.0°109.5°
O15P13O16109.8°109.5°
P13O15H11109.5°114.0°
P13O16P17129.0°134.0°
O29C24C25109.3°109.6°
O29C24C23108.5°109.6°
O29C24H3109.1°109.5°
C24O29H18109.5°114.0°
O16P17O18108.8°109.5°
O16P17O19112.8°109.5°
O16P17O20107.5°109.5°
C25C27O28110.4°109.4°
C27C25C24111.5°109.5°
C27C25O26107.2°109.5°
C27C25H14108.5°109.5°
C25C27H15109.2°109.5°
C25C27H16109.2°109.5°
O28C27H15109.3°109.4°
O28C27H16109.2°109.5°
C27O28H17109.5°114.0°
C24C25O26113.4°109.5°
C25C24C23113.6°109.1°
C25C24H3107.8°109.5°
C24C25H14107.8°109.5°
C25O26C21115.3°114.1°
O26C25H14108.3°109.5°
O18P17O19108.5°109.4°
O18P17O20109.7°109.4°
C24C23O30108.0°109.5°
C24C23C22113.5°109.1°
C23C24H3108.4°109.5°
C24C23H13108.2°109.6°
O19P17O20109.5°109.5°
P17O19H12109.5°114.0°
P17O20C21128.0°123.0°
O26C21O20110.7°109.4°
O26C21C22112.5°109.4°
O26C21H1105.1°109.5°
O30C23C22110.5°109.5°
O30C23H13108.6°109.6°
C23O30H19109.5°114.0°
C23C22C21113.4°109.1°
C23C22O31112.7°109.6°
C23C22H2106.8°109.6°
C22C23H13107.8°109.6°
O20C21C22117.4°109.5°
O20C21H1105.4°109.5°
C21C22O31109.1°109.5°
C22C21H1104.5°109.5°
C21C22H2106.5°109.5°
O31C22H2108.0°109.5°
C22O31H20109.5°114.0°
H9C11H10109.5°109.5°
H15C27H16109.5°109.5°
H24N39H25120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N39C35N36N34179.6°179.9°
N39C35N36C37179.9°180.0°
N39C35N34C04179.8°179.9°
N39C35N34H230.2°0.1°
C35N39H24H25180.0°180.0°
N36C35N34C040.3°0.2°
C35N36C37O38179.7°180.0°
C35N36C37C030.5°0.1°
N36C35N34H23179.7°180.0°
N36C35N39H240.0°0.0°
N36C35N39H25180.0°180.0°
N34C35N36C370.5°0.1°
C35N34C04H23180.0°179.9°
C35N34C04C030.0°0.2°
C35N34C04N05179.7°179.7°
N34C35N39H24179.6°179.9°
N34C35N39H250.5°0.0°
N36C37O38C03179.8°179.9°
N36C37C03C040.3°0.1°
N36C37C03N02179.9°180.0°
N34C04C03C370.0°0.1°
N34C04C03N05179.7°179.9°
N34C04C03N02179.9°179.9°
N34C04N05C061.0°0.2°
N34C04N05C01180.0°179.8°
O33C07C06C08118.9°118.7°
O33C07C06H6123.0°122.7°
O33C07C08H6122.0°122.6°
O33C07C08O3235.2°0.0°
O33C07C06N0586.3°98.5°
O33C07C06O10154.4°142.7°
O33C07C08C09153.0°118.6°
O33C07C06H537.2°23.7°
O33C07C08H790.6°122.7°
O38C37C03C04180.0°180.0°
O38C37C03N020.1°0.0°
C37C03C04N02179.9°179.9°
C37C03C04N05179.7°179.7°
C37C03N02C01179.9°180.0°
C03C04N05C06179.3°180.0°
C03C04N05C010.3°0.3°
C04C03N02C010.0°0.0°
C03C04N34H23180.0°180.0°
N05C04C03N020.2°0.2°
C04N05C06C07122.2°88.2°
C04N05C06C01178.7°179.6°
C04N05C06O10119.1°156.5°
C04N05C01N020.3°0.4°
C04N05C01H4179.7°179.8°
C04N05C06H52.5°34.2°
N05C04N34H230.3°0.2°
C03N02C01N050.2°0.3°
C03N02C01H4179.8°179.9°
C06C07C08H6120.4°118.7°
C06C07C08O3282.4°118.6°
C07C06N05O10118.6°115.4°
C07C06N05H5124.7°122.4°
C07C06N05C0159.0°92.3°
C07C06O10H5120.1°119.0°
C06C07C08C0935.4°0.0°
C07C06O10C0923.6°40.6°
C06C07C08H7151.8°118.7°
C06C07O33H22180.0°179.9°
C07C08O32C09114.0°114.6°
C07C08O32H7124.7°122.7°
C08C07C06N05154.8°142.8°
C08C07C06O1035.5°24.0°
C07C08C09H7117.0°118.7°
C07C08C09O1021.2°24.0°
C07C08C09C1197.0°142.8°
C08C07C06H581.8°94.9°
C07C08C09H8144.8°94.9°
C07C08O32H21180.0°61.5°
C08C07O33H2267.2°65.3°
O32C08C09H7123.0°122.7°
O32C08C09O1098.9°142.7°
O32C08C09C11142.9°98.6°
O32C08C07H6157.2°122.7°
O32C08C09H824.7°23.7°
N05C06O10H5118.0°122.2°
C06N05C01N02179.2°180.0°
N05C06O10C09145.6°159.4°
C06N05C01H40.8°0.2°
N05C06C07H636.7°24.2°
C01N05C06O1059.6°23.1°
N05C01N02H4180.0°179.8°
C01N05C06H5176.2°145.4°
C06O10C09C080.8°40.6°
C06O10C09C11116.6°159.4°
O10C06C07H682.6°94.6°
C06O10C09H8121.5°78.4°
C08C09O10C11117.5°118.8°
C08C09O10H8120.6°119.0°
C08C09C11H8118.2°122.3°
C08C09C11O1272.1°175.1°
C09C08C07H685.0°118.7°
C08C09C11H946.9°55.1°
C08C09C11H10168.9°64.9°
C09C08O32H2166.1°176.1°
O10C09C11H8124.7°122.4°
O10C09C11O12170.9°69.6°
C09O10C06H596.4°78.4°
O10C09C08H7138.1°94.6°
O10C09C11H970.2°170.4°
O10C09C11H1051.9°50.4°
C09C11O12H9118.9°120.0°
C09C11O12H10119.0°120.0°
C09C11O12P13167.3°179.9°
C11C09C08H720.0°24.1°
C09C11H9H10123.0°120.0°
C11O12P13O14151.0°55.0°
C11O12P13O1530.0°65.1°
C11O12P13O1691.2°175.0°
O12C11C09H846.2°52.7°
O12C11H9H10123.1°120.0°
O12P13O14O15120.0°120.0°
O12P13O14O16118.5°120.0°
O12P13O15O16121.2°120.0°
O12P13O16P17110.7°165.0°
P13O12C11H973.8°60.0°
P13O12C11H1048.4°60.0°
O12P13O15H11117.8°59.9°
O14P13O15O16121.0°120.0°
O14P13O16P17133.1°45.0°
O14P13O15H110.0°180.0°
O15P13O16P1710.5°75.0°
P13O16P17O1871.4°45.0°
P13O16P17O1949.0°75.0°
P13O16P17O20169.8°165.0°
O16P13O15H11121.0°60.0°
O29C24C25C2770.6°62.4°
O29C24C25C23121.4°120.0°
O29C24C25H3118.5°120.2°
O29C24C25O26168.3°177.6°
O29C24C23H3118.3°120.1°
O29C24C23O3067.4°63.2°
O29C24C23C22169.7°177.0°
O29C24C23H1350.0°57.1°
O29C24C25H1448.5°57.6°
O16P17O18O19123.1°120.0°
O16P17O18O20117.3°120.0°
O16P17O19O20119.6°120.1°
O16P17O20C2155.3°175.0°
O16P17O19H12120.6°60.0°
C25C27O28H15120.1°120.0°
C25C27O28H16120.1°120.0°
C27C25C24O26121.1°120.0°
C27C25C24H14119.0°120.0°
C27C25O26H14116.9°120.0°
C27C25C24C23168.0°177.6°
C27C25O26C21171.3°178.9°
C27C25C24H347.9°57.7°
C25C27H15H16119.6°120.1°
C25C27O28H17180.0°180.0°
O28C27C25C2469.8°175.0°
O28C27C25O2654.9°65.1°
O28C27C25H14171.6°54.9°
O28C27H15H16119.6°120.0°
C24C25O26H14119.6°120.0°
C25C24C23H3119.8°119.9°
C24C25O26C2147.8°61.1°
C25C24C23O30170.8°176.8°
C25C24C23C2247.9°57.0°
C25C24C23H1371.8°62.9°
C24C25C27H15170.0°55.0°
C24C25C27H1650.3°65.0°
C25C24O29H1872.4°179.7°
O26C25C24C2346.9°57.6°
C25O26C21O2085.2°58.9°
C25O26C21C2248.3°61.1°
C25O26C21H1161.4°178.9°
O26C25C24H373.2°62.3°
O26C25C27H1565.3°175.0°
O26C25C27H16175.0°54.9°
O18P17O19O20119.7°119.9°
O18P17O20C21173.4°55.0°
O18P17O19H120.0°180.0°
C24C23O30C22124.7°119.6°
C24C23O30H13117.1°120.2°
C24C23C22H13119.9°119.9°
C24C23C22C2148.8°57.0°
C24C23C22O31173.3°176.9°
C24C23C22H268.3°62.9°
C23C24C25H1472.9°62.4°
C23C24O29H1852.0°59.9°
C24C23O30H19180.0°180.0°
O19P17O20C2167.6°64.9°
P17O20C21O2696.2°90.1°
P17O20C21C2234.8°150.0°
P17O20C21H1150.6°30.0°
O20P17O19H12119.8°60.1°
O26C21C22C2348.3°57.6°
O26C21O20C22131.0°119.9°
O26C21O20H1113.2°120.0°
O26C21C22H1113.5°120.0°
O26C21C22O31174.8°177.5°
O26C21C22H268.9°62.4°
C21O26C25H1471.8°58.9°
O30C23C22H13118.6°120.2°
O30C23C22C21170.2°176.8°
O30C23C22O3165.2°63.3°
O30C23C22H253.2°56.9°
O30C23C24H350.9°56.9°
C23C22C21O2081.9°62.4°
C23C22C21O31126.5°119.9°
C23C22C21H2117.2°120.0°
C23C22O31H2117.7°120.2°
C23C22C21H1161.8°177.6°
C22C23C24H372.0°62.9°
C22C23O30H1955.3°60.5°
C23C22O31H20180.0°179.7°
O20C21C22H1116.3°120.0°
O20C21C22O3144.6°57.6°
O20C21C22H2160.9°177.7°
C21C22O31H2115.4°120.1°
C21C22C23H1371.2°62.9°
C21C22O31H2053.1°60.0°
O31C22C21H171.7°62.5°
O31C22C23H1353.4°57.0°
H1C21C22H244.6°57.6°
H2C22C23H13171.8°177.2°
H2C22O31H2062.3°60.1°
H3C24C23H13168.4°177.2°
H3C24C25H14166.9°177.7°
H3C24O29H18169.9°60.2°
H5C06C07H6160.2°146.4°
H6C07C08H731.4°0.0°
H6C07O33H2254.9°57.3°
H7C08C09H898.3°146.4°
H7C08O32H2155.3°61.2°
H8C09C11H9165.1°67.3°
H8C09C11H1072.8°172.7°
H13C23O30H1962.9°59.7°
H14C25C27H1551.4°65.0°
H14C25C27H1668.3°174.9°
H15C27O28H1759.9°60.0°
H16C27O28H1759.9°60.0°

224931

PDB entries from 2024-09-11

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