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GDC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3PPsing1.61Å1.50Å
O3PH3Psing0.97Å0.95Å
PO1Pdoub1.48Å1.49Å
PO2Psing1.61Å1.60Å
PO5'sing1.61Å1.58Å
O2PP1sing1.61Å1.58Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.53Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.45Å1.47Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.40Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.54Å
C3'H3'sing1.09Å1.10Å
O3'HAsing0.97Å0.95Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.54Å1.55Å
C2'H2'sing1.09Å1.10Å
O2'HBsing0.97Å0.95Å
C1'N9sing1.47Å1.44Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.38ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.36Å1.36ÅAromatic
C6O6doub1.22Å1.27Å
C6C5sing1.41Å1.45Å
C6N1sing1.35Å1.35Å
C5C4doub1.40Å1.48ÅAromatic
N1C2sing1.36Å1.38Å
N1H1sing0.97Å1.00Å
C2N2sing1.37Å1.33Å
C2N3doub1.31Å1.35Å
N2H2N1sing0.97Å1.00Å
N2H2N2sing0.97Å1.00Å
N3C4sing1.34Å1.36Å
C1C2Asing1.53Å1.56Å
C1O1sing1.43Å1.30Å
C1O5sing1.43Å1.45Å
C1HCsing1.09Å1.10Å
C2AC3sing1.53Å1.50Å
C2AO2sing1.43Å1.43Å
C2AH2Asing1.09Å1.10Å
C3C4Asing1.53Å1.53Å
C3O3sing1.43Å1.41Å
C3H3sing1.09Å1.10Å
C4AC5Asing1.53Å1.52Å
C4AO4sing1.43Å1.43Å
C4AH4Asing1.09Å1.10Å
C5AC6Asing1.53Å1.55Å
C5AO5sing1.43Å1.40Å
C5AH5Asing1.09Å1.10Å
C6AO6Asing1.43Å1.40Å
C6AH6A1sing1.09Å1.10Å
C6AH6A2sing1.09Å1.10Å
O1P1sing1.61Å1.57Å
O2H2sing0.97Å0.95Å
O3HDsing0.97Å0.95Å
O4H4sing0.97Å0.95Å
O6AH6Asing0.97Å0.95Å
P1O1Xsing1.61Å1.50Å
P1O2Xdoub1.48Å1.47Å
O1XH1PAsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PO3PH3P109.5°106.8°
O3PPO1P118.0°109.5°
O3PPO2P106.7°109.5°
O3PPO5'107.1°109.5°
O1PPO2P110.1°109.4°
O1PPO5'109.7°109.4°
O2PPO5'104.2°109.5°
PO2PP1139.3°106.8°
PO5'C5'121.1°106.8°
O2PP1O1102.4°109.5°
O2PP1O1X110.4°109.5°
O2PP1O2X112.8°109.5°
O5'C5'C4'108.6°109.5°
O5'C5'H5'1109.9°109.5°
O5'C5'H5'2109.7°109.4°
C4'C5'H5'1109.9°109.5°
C4'C5'H5'2109.7°109.5°
C5'C4'O4'107.8°110.4°
C5'C4'C3'112.9°110.5°
C5'C4'H4'108.2°110.3°
H5'1C5'H5'2108.8°109.4°
O4'C4'C3'109.2°104.8°
O4'C4'H4'112.0°110.3°
C4'O4'C1'106.1°105.2°
C3'C4'H4'106.7°110.4°
C4'C3'O3'109.3°110.5°
C4'C3'C2'101.1°104.1°
C4'C3'H3'114.9°110.5°
O4'C1'C2'104.6°105.0°
O4'C1'N9109.9°110.3°
O4'C1'H1'113.2°110.4°
O3'C3'C2'109.5°110.5°
O3'C3'H3'107.2°110.4°
C3'O3'HA109.5°106.8°
C2'C3'H3'114.7°110.6°
C3'C2'O2'115.9°110.5°
C3'C2'C1'99.9°103.9°
C3'C2'H2'111.5°110.4°
O2'C2'C1'108.7°110.8°
O2'C2'H2'103.1°110.5°
C2'O2'HB109.5°106.8°
C1'C2'H2'118.4°110.4°
C2'C1'N9112.0°110.4°
C2'C1'H1'111.2°110.4°
N9C1'H1'106.0°110.3°
C1'N9C8123.0°126.3°
C1'N9C4128.7°126.2°
C8N9C4108.2°107.4°
N9C8N7111.5°109.9°
N9C8H8124.3°125.1°
N9C4C5106.1°106.1°
N9C4N3130.7°134.2°
N7C8H8124.3°125.1°
C8N7C5106.4°109.3°
N7C5C6135.6°134.1°
N7C5C4107.6°107.3°
O6C6C5122.6°120.8°
O6C6N1120.4°120.8°
C5C6N1116.9°118.4°
C6C5C4116.4°118.6°
C6N1C2122.9°120.3°
C6N1H1118.6°119.9°
C5C4N3123.2°119.7°
C2N1H1118.6°119.8°
N1C2N2118.7°119.1°
N1C2N3124.3°121.9°
N2C2N3117.0°119.0°
C2N2H2N1125.1°120.0°
C2N2H2N2109.8°120.0°
C2N3C4116.1°121.1°
H2N1N2H2N2125.1°120.0°
C2AC1O1107.8°109.4°
C2AC1O5106.8°109.8°
C2AC1HC111.4°109.4°
C1C2AC3110.8°109.0°
C1C2AO2111.8°109.6°
C1C2AH2A106.8°109.6°
O1C1O5106.7°109.4°
O1C1HC111.5°109.4°
C1O1P1117.2°106.8°
O5C1HC112.4°109.4°
C1O5C5A110.8°107.6°
C3C2AO2108.9°109.6°
C3C2AH2A109.7°109.5°
C2AC3C4A109.7°108.6°
C2AC3O3109.9°109.7°
C2AC3H3108.6°109.7°
O2C2AH2A108.8°109.5°
C2AO2H2109.5°106.8°
C4AC3O3108.2°109.6°
C4AC3H3110.3°109.6°
C3C4AC5A108.5°109.0°
C3C4AO4115.3°109.6°
C3C4AH4A106.8°109.5°
O3C3H3110.1°109.6°
C3O3HD109.5°106.8°
C5AC4AO4111.5°109.5°
C5AC4AH4A111.0°109.5°
C4AC5AC6A110.9°109.4°
C4AC5AO5113.0°109.8°
C4AC5AH5A104.7°109.5°
O4C4AH4A103.5°109.6°
C4AO4H4109.5°106.8°
C6AC5AO5105.0°109.4°
C6AC5AH5A112.8°109.4°
C5AC6AO6A109.6°109.5°
C5AC6AH6A1109.4°109.4°
C5AC6AH6A2109.4°109.5°
O5C5AH5A110.7°109.4°
O6AC6AH6A1109.4°109.5°
O6AC6AH6A2109.4°109.5°
C6AO6AH6A109.5°106.8°
H6A1C6AH6A2109.6°109.5°
O1P1O1X112.3°109.4°
O1P1O2X101.7°109.5°
O1XP1O2X116.0°109.5°
P1O1XH1PA109.5°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3PPO1PO2P122.8°120.0°
O3PPO1PO5'123.0°120.1°
O3PPO2PO5'113.2°120.1°
O3PPO2PP1154.1°80.0°
O3PPO5'C5'169.2°65.0°
H3PO3PPO1P145.4°180.0°
H3PO3PPO2P20.9°60.1°
H3PO3PPO5'90.3°59.9°
O1PPO2PO5'117.6°119.9°
O1PPO2PP176.7°40.0°
O1PPO5'C5'40.0°55.1°
O2PPO5'C5'77.9°175.0°
PO2PP1O1176.2°165.0°
PO2PP1O1X56.4°75.0°
PO2PP1O2X75.3°45.0°
O5'PO2PP141.0°160.0°
PO5'C5'C4'175.8°180.0°
PO5'C5'H5'155.5°59.9°
PO5'C5'H5'264.2°60.0°
O2PP1O1C157.6°175.0°
O2PP1O1O1X118.5°120.0°
O2PP1O1O2X116.8°120.0°
O2PP1O1XO2X130.0°120.0°
O2PP1O1XH1PA14.5°60.0°
O5'C5'C4'H5'1120.3°120.1°
O5'C5'C4'H5'2120.0°119.9°
O5'C5'H5'1H5'2120.2°119.9°
O5'C5'C4'O4'73.7°66.4°
O5'C5'C4'C3'47.0°178.2°
O5'C5'C4'H4'165.0°55.8°
C4'C5'H5'1H5'2120.2°120.0°
C5'C4'O4'C3'123.0°119.0°
C5'C4'O4'H4'118.9°122.2°
C5'C4'C3'H4'118.8°122.3°
C5'C4'O4'C1'133.4°159.5°
C5'C4'C3'O3'142.3°98.3°
C5'C4'C3'C2'102.3°143.0°
C5'C4'C3'H3'21.7°24.2°
H5'1C5'C4'O4'46.7°173.6°
H5'1C5'C4'C3'167.4°58.1°
H5'1C5'C4'H4'74.6°64.3°
H5'2C5'C4'O4'166.3°53.6°
H5'2C5'C4'C3'72.9°61.9°
H5'2C5'C4'H4'45.0°175.8°
O4'C4'C3'H4'121.3°118.8°
O4'C4'C3'O3'97.8°142.8°
O4'C4'C3'C2'17.6°24.1°
O4'C4'C3'H3'141.6°94.7°
C4'O4'C1'C2'34.0°40.4°
C4'O4'C1'N9154.3°159.3°
C4'O4'C1'H1'87.3°78.5°
C3'C4'O4'C1'10.3°40.5°
C4'C3'O3'C2'109.9°114.7°
C4'C3'O3'H3'125.2°122.6°
C4'C3'C2'H3'124.2°118.8°
C4'C3'O3'HA175.3°180.0°
C4'C3'C2'O2'152.0°118.8°
C4'C3'C2'C1'35.5°0.2°
C4'C3'C2'H2'90.4°118.6°
H4'C4'O4'C1'107.7°78.4°
H4'C4'C3'O3'23.4°24.0°
H4'C4'C3'C2'138.9°94.7°
H4'C4'C3'H3'97.1°146.5°
O4'C1'C2'C3'44.4°23.8°
O4'C1'C2'O2'166.1°142.6°
O4'C1'C2'N9119.0°118.9°
O4'C1'C2'H1'122.6°118.9°
O4'C1'C2'H2'76.8°94.6°
O4'C1'N9H1'122.7°122.2°
O4'C1'N9C8120.1°22.1°
O4'C1'N9C464.3°157.9°
O3'C3'C2'H3'120.6°122.6°
O3'C3'C2'O2'36.8°0.1°
O3'C3'C2'C1'79.7°118.8°
O3'C3'C2'H2'154.4°122.7°
C2'C3'O3'HA65.4°65.3°
C3'C2'O2'C1'111.4°114.7°
C3'C2'O2'H2'122.2°122.6°
C3'C2'C1'H2'121.2°118.5°
C3'C2'O2'HB99.3°61.5°
C3'C2'C1'N9163.4°142.7°
C3'C2'C1'H1'78.2°95.1°
H3'C3'O3'HA59.6°57.4°
H3'C3'C2'O2'83.8°122.5°
H3'C3'C2'C1'159.8°118.6°
H3'C3'C2'H2'33.8°0.1°
O2'C2'C1'H2'117.1°122.8°
O2'C2'C1'N974.9°98.6°
O2'C2'C1'H1'43.5°23.6°
C1'C2'O2'HB149.4°176.2°
C2'C1'N9H1'121.5°122.2°
C2'C1'N9C8124.1°93.5°
C2'C1'N9C451.5°86.5°
H2'C2'O2'HB22.9°61.0°
H2'C2'C1'N942.2°24.2°
H2'C2'C1'H1'160.6°146.4°
C1'N9C8C4176.3°180.0°
C1'N9C8N7174.5°180.0°
C1'N9C8H85.5°0.0°
C1'N9C4C5177.6°180.0°
C1'N9C4N35.4°0.0°
H1'C1'N9C82.6°144.3°
H1'C1'N9C4173.0°35.7°
N9C8N7H8180.0°180.0°
N9C8N7C54.5°0.0°
C8N9C4C51.5°0.0°
C8N9C4N3178.5°180.0°
C4N9C8N71.8°0.0°
C4N9C8H8178.2°180.0°
N9C4C5N74.3°0.0°
N9C4C5C6177.5°180.0°
N9C4C5N3177.3°180.0°
N9C4N3C2176.5°180.0°
C8N7C5C6176.6°180.0°
C8N7C5C45.3°0.0°
H8C8N7C5175.4°180.0°
N7C5C6O68.9°0.0°
N7C5C6C4170.8°180.0°
N7C5C6N1172.8°179.7°
N7C5C4N3178.4°180.0°
O6C6C5N1178.3°179.7°
O6C6C5C4179.7°180.0°
O6C6N1C2179.6°179.7°
O6C6N1H10.4°0.3°
C5C6N1C21.2°0.6°
C5C6N1H1178.8°180.0°
C6C5C4N35.1°0.0°
N1C6C5C42.0°0.3°
C6N1C2H1180.0°179.5°
C6N1C2N2179.8°179.7°
C6N1C2N33.3°0.6°
C5C4N3C26.9°0.0°
N1C2N2N3177.1°179.8°
N1C2N2H2N10.0°179.8°
N1C2N2H2N2180.0°0.6°
N1C2N3C46.0°0.3°
H1N1C2N20.2°0.2°
H1N1C2N3176.6°180.0°
C2N2H2N1H2N2180.0°179.7°
N2C2N3C4177.1°180.0°
N3C2N2H2N1177.0°0.0°
N3C2N2H2N23.0°179.7°
C2AC1O1O5114.4°120.3°
C2AC1O1HC122.6°119.8°
C2AC1O5HC122.5°120.1°
C1C2AC3O2123.3°119.9°
C1C2AC3H2A117.7°119.9°
C1C2AO2H2A117.6°120.2°
C1C2AC3C4A55.7°53.8°
C1C2AC3O3174.6°173.6°
C1C2AC3H364.9°66.0°
C2AC1O5C5A63.1°67.6°
C2AC1O1P1137.1°149.9°
C1C2AO2H2139.7°60.4°
O1C1O5HC122.5°119.8°
O1C1C2AC3174.2°178.6°
O1C1C2AO264.2°58.6°
O1C1C2AH2A54.7°61.6°
O1C1O5C5A178.2°172.3°
C1O1P1O1X60.9°65.0°
C1O1P1O2X174.4°54.9°
O5C1C2AC359.8°61.3°
O5C1C2AO2178.5°178.7°
O5C1C2AH2A59.7°58.5°
C1O5C5AC4A64.5°67.6°
C1O5C5AC6A174.5°172.4°
C1O5C5AH5A52.5°52.6°
O5C1O1P1108.5°89.8°
HCC1C2AC363.2°58.8°
HCC1C2AO258.4°61.2°
HCC1C2AH2A177.3°178.6°
HCC1O5C5A59.3°52.5°
HCC1O1P114.5°30.0°
C3C2AO2H2A119.6°120.2°
C2AC3C4AO3119.9°119.8°
C2AC3C4AH3119.6°119.8°
C2AC3O3H3119.6°120.5°
C2AC3C4AC5A52.0°53.8°
C2AC3C4AO473.9°66.1°
C2AC3C4AH4A171.8°173.6°
C3C2AO2H297.5°179.9°
C2AC3O3HD172.0°60.8°
O2C2AC3C4A179.0°173.7°
O2C2AC3O362.1°66.5°
O2C2AC3H358.4°53.9°
H2AC2AC3C4A62.0°66.1°
H2AC2AC3O356.9°53.7°
H2AC2AC3H3177.4°174.1°
H2AC2AO2H222.0°59.9°
C4AC3O3H3120.6°120.4°
C3C4AC5AO4128.1°120.0°
C3C4AC5AH4A117.1°119.8°
C3C4AO4H4A116.3°120.3°
C3C4AC5AC6A174.6°178.7°
C3C4AC5AO557.1°61.3°
C3C4AC5AH5A63.5°58.8°
C4AC3O3HD52.2°180.0°
C3C4AO4H4154.1°60.5°
O3C3C4AC5A171.9°173.6°
O3C3C4AO446.0°53.7°
O3C3C4AH4A68.3°66.5°
H3C3C4AC5A67.6°66.0°
H3C3C4AO4166.5°174.1°
H3C3C4AH4A52.2°53.8°
H3C3O3HD68.4°59.6°
C5AC4AO4H4A119.4°120.2°
C4AC5AC6AO5122.3°120.3°
C4AC5AC6AH5A117.1°119.9°
C4AC5AO5H5A117.0°120.2°
C4AC5AC6AO6A167.1°174.7°
C4AC5AC6AH6A147.2°65.3°
C4AC5AC6AH6A272.9°54.7°
C5AC4AO4H429.8°180.0°
O4C4AC5AC6A46.5°61.4°
O4C4AC5AO571.0°58.7°
O4C4AC5AH5A168.5°178.8°
H4AC4AC5AC6A68.3°58.8°
H4AC4AC5AO5174.2°178.9°
H4AC4AC5AH5A53.7°61.0°
H4AC4AO4H489.6°59.8°
C6AC5AO5H5A122.0°119.8°
C5AC6AO6AH6A1119.9°119.9°
C5AC6AO6AH6A2120.0°120.0°
C5AC6AH6A1H6A2120.0°120.0°
C5AC6AO6AH6A59.4°180.0°
O5C5AC6AO6A70.6°65.0°
O5C5AC6AH6A1169.5°55.0°
O5C5AC6AH6A249.4°175.0°
H5AC5AC6AO6A50.0°54.9°
H5AC5AC6AH6A169.9°174.8°
H5AC5AC6AH6A2170.0°65.2°
O6AC6AH6A1H6A2120.0°120.1°
H6A1C6AO6AH6A179.4°60.1°
H6A2C6AO6AH6A60.6°59.9°
O1P1O1XO2X116.4°120.0°
O1P1O1XH1PA128.1°60.0°
O2XP1O1XH1PA115.5°180.0°

222415

PDB entries from 2024-07-10

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