Obsolete: GCL

GCL was replaced with XAO on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.54Å
C1	C1'	sing	1.53Å	1.54Å
C1	H11	sing	1.09Å	1.12Å
C1	H12	sing	1.09Å	1.11Å
C2	C3	sing	1.53Å	1.54Å
C2	N2	sing	1.47Å	1.47Å
C2	H2	sing	1.09Å	1.11Å
C3	C4	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.42Å
C3	H3	sing	1.09Å	1.11Å
C4	C5	sing	1.53Å	1.53Å
C4	O4	sing	1.43Å	1.53Å
C4	H4	sing	1.09Å	1.11Å
C5	C6	sing	1.53Å	1.54Å
C5	H51	sing	1.09Å	1.11Å
C5	H52	sing	1.09Å	1.12Å
C6	C7	sing	1.53Å	1.53Å
C6	C8	sing	1.53Å	1.53Å
C6	H6	sing	1.09Å	1.11Å
C7	H71	sing	1.09Å	1.12Å
C7	H72	sing	1.09Å	1.11Å
C7	H73	sing	1.09Å	1.12Å
C8	H81	sing	1.09Å	1.11Å
C8	H82	sing	1.09Å	1.12Å
C8	H83	sing	1.09Å	1.11Å
C1'	C2'	sing	1.53Å	1.54Å
C1'	C6'	sing	1.53Å	1.41Å
C1'	H1'	sing	1.09Å	1.12Å
C2'	C3'	sing	1.53Å	1.54Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C3'	C4'	sing	1.53Å	1.53Å
C3'	H3'1	sing	1.09Å	1.11Å
C3'	H3'2	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.53Å
C4'	H4'1	sing	1.09Å	1.11Å
C4'	H4'2	sing	1.09Å	1.11Å
C5'	C6'	sing	1.53Å	1.53Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C6'	H6'1	sing	1.09Å	1.12Å
C6'	H6'2	sing	1.09Å	1.11Å
N2	HN21	sing	1.01Å	1.02Å
N2	HN22	sing	1.01Å	1.02Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C1'	113.6°	109.5°
C2	C1	H11	110.7°	109.5°
C2	C1	H12	110.7°	109.5°
C1	C2	C3	110.0°	109.5°
C1	C2	N2	110.2°	109.5°
C1	C2	H2	108.7°	109.5°
C1'	C1	H11	110.7°	109.5°
C1'	C1	H12	110.7°	109.5°
C1	C1'	C2'	110.4°	109.5°
C1	C1'	C6'	109.9°	109.5°
C1	C1'	H1'	108.4°	109.5°
H11	C1	H12	99.6°	109.4°
C3	C2	N2	109.7°	109.5°
C3	C2	H2	109.2°	109.5°
C2	C3	C4	109.3°	109.5°
C2	C3	O3	110.0°	109.5°
C2	C3	H3	109.3°	109.5°
N2	C2	H2	109.0°	109.4°
C2	N2	HN21	110.2°	106.7°
C2	N2	HN22	112.0°	106.7°
C4	C3	O3	109.4°	109.4°
C4	C3	H3	109.8°	109.5°
C3	C4	C5	111.2°	109.5°
C3	C4	O4	109.9°	109.4°
C3	C4	H4	107.6°	109.5°
O3	C3	H3	109.0°	109.4°
C3	O3	HO3	110.0°	106.8°
C5	C4	O4	108.3°	109.4°
C5	C4	H4	109.2°	109.5°
C4	C5	C6	109.5°	109.5°
C4	C5	H51	112.2°	109.5°
C4	C5	H52	112.2°	109.5°
O4	C4	H4	110.6°	109.5°
C4	O4	HO4	109.9°	106.8°
C6	C5	H51	112.2°	109.4°
C6	C5	H52	112.2°	109.5°
C5	C6	C7	110.3°	109.5°
C5	C6	C8	110.0°	109.5°
C5	C6	H6	108.4°	109.5°
H51	C5	H52	98.2°	109.5°
C7	C6	C8	108.8°	109.5°
C7	C6	H6	109.5°	109.4°
C6	C7	H71	110.3°	109.5°
C6	C7	H72	111.9°	109.5°
C6	C7	H73	111.9°	109.4°
C8	C6	H6	109.8°	109.5°
C6	C8	H81	110.0°	109.5°
C6	C8	H82	112.0°	109.4°
C6	C8	H83	112.0°	109.4°
H71	C7	H72	111.9°	109.5°
H71	C7	H73	111.8°	109.4°
H72	C7	H73	98.5°	109.4°
H81	C8	H82	111.9°	109.5°
H81	C8	H83	112.0°	109.5°
H82	C8	H83	98.4°	109.5°
C2'	C1'	C6'	108.9°	109.5°
C2'	C1'	H1'	109.4°	109.4°
C1'	C2'	C3'	110.3°	109.5°
C1'	C2'	H2'1	111.9°	109.5°
C1'	C2'	H2'2	111.9°	109.4°
C6'	C1'	H1'	109.9°	109.4°
C1'	C6'	C5'	110.5°	109.5°
C1'	C6'	H6'1	111.8°	109.5°
C1'	C6'	H6'2	111.8°	109.5°
C3'	C2'	H2'1	111.9°	109.5°
C3'	C2'	H2'2	111.9°	109.4°
C2'	C3'	C4'	109.9°	109.5°
C2'	C3'	H3'1	112.0°	109.5°
C2'	C3'	H3'2	112.0°	109.5°
H2'1	C2'	H2'2	98.5°	109.5°
C4'	C3'	H3'1	112.1°	109.4°
C4'	C3'	H3'2	112.0°	109.5°
C3'	C4'	C5'	109.6°	109.5°
C3'	C4'	H4'1	112.1°	109.5°
C3'	C4'	H4'2	112.1°	109.4°
H3'1	C3'	H3'2	98.4°	109.3°
C5'	C4'	H4'1	112.2°	109.5°
C5'	C4'	H4'2	112.1°	109.4°
C4'	C5'	C6'	110.1°	109.5°
C4'	C5'	H5'1	112.0°	109.4°
C4'	C5'	H5'2	112.0°	109.5°
H4'1	C4'	H4'2	98.3°	109.4°
C6'	C5'	H5'1	112.0°	109.4°
C6'	C5'	H5'2	112.0°	109.5°
C5'	C6'	H6'1	111.8°	109.4°
C5'	C6'	H6'2	111.9°	109.5°
H5'1	C5'	H5'2	98.4°	109.4°
H6'1	C6'	H6'2	98.6°	109.5°
HN21	N2	HN22	111.9°	106.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C1'	H11	125.2°	120.1°
C2	C1	C1'	H12	125.2°	120.0°
C2	C1	H11	H12	116.5°	120.0°
C1	C2	C3	N2	121.4°	120.0°
C1	C2	C3	H2	119.2°	120.0°
C1	C2	N2	H2	119.2°	120.0°
C1	C2	C3	C4	179.2°	180.0°
C1	C2	C3	O3	60.6°	60.0°
C1	C2	C3	H3	59.0°	60.0°
C2	C1	C1'	C2'	60.9°	180.0°
C2	C1	C1'	C6'	179.0°	60.0°
C2	C1	C1'	H1'	58.9°	60.0°
C1	C2	N2	HN21	180.0°	60.0°
C1	C2	N2	HN22	54.7°	53.7°
C1'	C1	H11	H12	116.6°	119.9°
C1'	C1	C2	C3	176.5°	180.0°
C1'	C1	C2	N2	55.3°	60.0°
C1'	C1	C2	H2	64.0°	60.0°
C1	C1'	C2'	C6'	120.7°	120.0°
C1	C1'	C2'	H1'	119.2°	120.0°
C1	C1'	C6'	H1'	119.2°	120.0°
C1	C1'	C2'	C3'	177.8°	179.9°
C1	C1'	C2'	H2'1	56.9°	60.0°
C1	C1'	C2'	H2'2	52.6°	60.1°
C1	C1'	C6'	C5'	175.4°	180.0°
C1	C1'	C6'	H6'1	50.1°	60.0°
C1	C1'	C6'	H6'2	59.3°	60.0°
H11	C1	C2	C3	51.2°	60.0°
H11	C1	C2	N2	69.9°	60.0°
H11	C1	C2	H2	170.7°	180.0°
H11	C1	C1'	C2'	173.9°	59.9°
H11	C1	C1'	C6'	53.8°	180.0°
H11	C1	C1'	H1'	66.3°	60.1°
H12	C1	C2	C3	58.3°	60.0°
H12	C1	C2	N2	179.4°	180.0°
H12	C1	C2	H2	61.2°	60.1°
H12	C1	C1'	C2'	64.3°	60.0°
H12	C1	C1'	C6'	55.8°	60.0°
H12	C1	C1'	H1'	175.9°	180.0°
C3	C2	N2	H2	119.5°	120.0°
C2	C3	C4	O3	120.6°	120.0°
C2	C3	C4	H3	119.8°	120.0°
C2	C3	O3	H3	119.8°	120.0°
C2	C3	C4	C5	175.4°	180.0°
C2	C3	C4	O4	64.6°	60.0°
C2	C3	C4	H4	55.8°	60.0°
C3	C2	N2	HN21	58.7°	60.0°
C3	C2	N2	HN22	176.0°	173.7°
C2	C3	O3	HO3	179.9°	60.0°
N2	C2	C3	C4	59.4°	59.9°
N2	C2	C3	O3	60.8°	60.0°
N2	C2	C3	H3	179.5°	180.0°
C2	N2	HN21	HN22	125.3°	113.7°
H2	C2	C3	C4	59.9°	60.0°
H2	C2	C3	O3	179.9°	180.0°
H2	C2	C3	H3	60.2°	60.0°
H2	C2	N2	HN21	60.8°	180.0°
H2	C2	N2	HN22	64.5°	66.2°
C4	C3	O3	H3	120.1°	120.0°
C3	C4	C5	O4	120.9°	119.9°
C3	C4	C5	H4	118.6°	120.1°
C3	C4	O4	H4	118.7°	120.0°
C3	C4	C5	C6	179.7°	180.0°
C3	C4	C5	H51	55.1°	60.1°
C3	C4	C5	H52	54.4°	59.9°
C4	C3	O3	HO3	59.8°	60.0°
C3	C4	O4	HO4	180.0°	60.0°
O3	C3	C4	C5	54.8°	60.0°
O3	C3	C4	O4	174.8°	180.0°
O3	C3	C4	H4	64.7°	60.0°
H3	C3	C4	C5	64.8°	59.9°
H3	C3	C4	O4	55.2°	60.0°
H3	C3	C4	H4	175.7°	180.0°
H3	C3	O3	HO3	60.2°	180.0°
C5	C4	O4	H4	119.6°	120.0°
C4	C5	C6	H51	125.3°	119.9°
C4	C5	C6	H52	125.2°	120.1°
C4	C5	H51	H52	118.1°	120.0°
C4	C5	C6	C7	170.6°	180.0°
C4	C5	C6	C8	69.3°	59.9°
C4	C5	C6	H6	50.7°	60.1°
C5	C4	O4	HO4	58.3°	60.0°
O4	C4	C5	C6	59.4°	60.1°
O4	C4	C5	H51	65.8°	180.0°
O4	C4	C5	H52	175.3°	60.0°
H4	C4	C5	C6	61.0°	59.9°
H4	C4	C5	H51	173.7°	60.0°
H4	C4	C5	H52	64.2°	180.0°
H4	C4	O4	HO4	61.3°	180.0°
C6	C5	H51	H52	118.1°	120.0°
C5	C6	C7	C8	120.7°	120.1°
C5	C6	C7	H6	119.2°	120.0°
C5	C6	C8	H6	119.2°	120.0°
C5	C6	C7	H71	180.0°	180.0°
C5	C6	C7	H72	54.7°	59.9°
C5	C6	C7	H73	54.8°	60.1°
C5	C6	C8	H81	180.0°	60.0°
C5	C6	C8	H82	54.8°	60.0°
C5	C6	C8	H83	54.8°	180.0°
H51	C5	C6	C7	45.3°	60.1°
H51	C5	C6	C8	165.4°	60.0°
H51	C5	C6	H6	74.6°	180.0°
H52	C5	C6	C7	64.1°	59.9°
H52	C5	C6	C8	55.9°	180.0°
H52	C5	C6	H6	176.0°	60.0°
C7	C6	C8	H6	119.9°	119.9°
C6	C7	H71	H72	125.3°	120.1°
C6	C7	H71	H73	125.3°	120.0°
C6	C7	H72	H73	117.9°	120.0°
C7	C6	C8	H81	59.1°	60.0°
C7	C6	C8	H82	66.1°	179.9°
C7	C6	C8	H83	175.7°	59.9°
C8	C6	C7	H71	59.2°	59.9°
C8	C6	C7	H72	175.5°	180.0°
C8	C6	C7	H73	66.0°	60.0°
C6	C8	H81	H82	125.2°	120.0°
C6	C8	H81	H83	125.3°	119.9°
C6	C8	H82	H83	118.0°	120.0°
H6	C6	C7	H71	60.8°	60.1°
H6	C6	C7	H72	64.5°	60.0°
H6	C6	C7	H73	174.0°	180.0°
H6	C6	C8	H81	60.8°	179.9°
H6	C6	C8	H82	174.0°	60.0°
H6	C6	C8	H83	64.5°	60.0°
H71	C7	H72	H73	117.7°	119.9°
H81	C8	H82	H83	117.9°	120.0°
C2'	C1'	C6'	H1'	119.8°	120.0°
C1'	C2'	C3'	H2'1	125.2°	120.1°
C1'	C2'	C3'	H2'2	125.2°	119.9°
C1'	C2'	H2'1	H2'2	117.8°	120.0°
C1'	C2'	C3'	C4'	56.0°	59.9°
C1'	C2'	C3'	H3'1	178.7°	60.0°
C1'	C2'	C3'	H3'2	69.3°	179.9°
C2'	C1'	C6'	C5'	63.6°	59.9°
C2'	C1'	C6'	H6'1	171.1°	60.0°
C2'	C1'	C6'	H6'2	61.7°	180.0°
C6'	C1'	C2'	C3'	61.5°	59.9°
C6'	C1'	C2'	H2'1	63.8°	180.0°
C6'	C1'	C2'	H2'2	173.3°	60.0°
C1'	C6'	C5'	C4'	62.3°	59.9°
C1'	C6'	C5'	H6'1	125.2°	120.0°
C1'	C6'	C5'	H6'2	125.3°	120.0°
C1'	C6'	C5'	H5'1	172.4°	60.0°
C1'	C6'	C5'	H5'2	62.9°	180.0°
C1'	C6'	H6'1	H6'2	117.7°	120.0°
H1'	C1'	C2'	C3'	58.6°	60.0°
H1'	C1'	C2'	H2'1	176.1°	60.0°
H1'	C1'	C2'	H2'2	66.6°	179.9°
H1'	C1'	C6'	C5'	56.2°	60.0°
H1'	C1'	C6'	H6'1	69.0°	179.9°
H1'	C1'	C6'	H6'2	178.5°	60.0°
C3'	C2'	H2'1	H2'2	117.8°	119.9°
C2'	C3'	C4'	H3'1	125.3°	120.0°
C2'	C3'	C4'	H3'2	125.2°	120.1°
C2'	C3'	H3'1	H3'2	117.9°	120.0°
C2'	C3'	C4'	C5'	53.8°	59.9°
C2'	C3'	C4'	H4'1	71.5°	180.0°
C2'	C3'	C4'	H4'2	179.0°	60.0°
H2'1	C2'	C3'	C4'	69.3°	180.0°
H2'1	C2'	C3'	H3'1	56.0°	60.0°
H2'1	C2'	C3'	H3'2	165.5°	59.8°
H2'2	C2'	C3'	C4'	178.8°	60.0°
H2'2	C2'	C3'	H3'1	53.5°	180.0°
H2'2	C2'	C3'	H3'2	56.0°	60.1°
C4'	C3'	H3'1	H3'2	118.0°	119.9°
C3'	C4'	C5'	H4'1	125.2°	120.1°
C3'	C4'	C5'	H4'2	125.2°	120.0°
C3'	C4'	H4'1	H4'2	118.1°	119.9°
C3'	C4'	C5'	C6'	55.6°	59.9°
C3'	C4'	C5'	H5'1	179.1°	60.0°
C3'	C4'	C5'	H5'2	69.6°	180.0°
H3'1	C3'	C4'	C5'	179.0°	60.1°
H3'1	C3'	C4'	H4'1	53.7°	60.0°
H3'1	C3'	C4'	H4'2	55.8°	179.9°
H3'2	C3'	C4'	C5'	71.5°	179.9°
H3'2	C3'	C4'	H4'1	163.3°	59.8°
H3'2	C3'	C4'	H4'2	53.7°	60.1°
C5'	C4'	H4'1	H4'2	118.1°	120.0°
C4'	C5'	C6'	H5'1	125.3°	120.0°
C4'	C5'	C6'	H5'2	125.2°	120.1°
C4'	C5'	H5'1	H5'2	117.9°	120.0°
C4'	C5'	C6'	H6'1	172.5°	60.0°
C4'	C5'	C6'	H6'2	63.0°	179.9°
H4'1	C4'	C5'	C6'	69.6°	180.0°
H4'1	C4'	C5'	H5'1	55.7°	60.1°
H4'1	C4'	C5'	H5'2	165.1°	59.9°
H4'2	C4'	C5'	C6'	179.2°	60.1°
H4'2	C4'	C5'	H5'1	53.9°	180.0°
H4'2	C4'	C5'	H5'2	55.6°	60.1°
C6'	C5'	H5'1	H5'2	117.9°	120.0°
C5'	C6'	H6'1	H6'2	117.8°	120.0°
H5'1	C5'	C6'	H6'1	47.1°	180.0°
H5'1	C5'	C6'	H6'2	62.3°	60.0°
H5'2	C5'	C6'	H6'1	62.3°	60.1°
H5'2	C5'	C6'	H6'2	171.8°	60.0°

Definition date:	1999-07-08
Last modified:	2008-10-14
Release status:	OBS
Processing site:	RCSB
Replaced by:	XAO
Derived from:	1EPQ