GCK

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.50Å	1.51Å
P	O2P	sing	1.62Å	1.46Å
P	O5'	sing	1.62Å	1.58Å
P	O3P	sing	1.62Å	1.54Å
O2P	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.44Å
N1	C6	sing	1.38Å	1.36Å
N1	C2	sing	1.41Å	1.39Å
N1	C1'	sing	1.43Å	1.55Å
C6	C5	doub	1.33Å	1.35Å
C6	H6	sing	1.08Å	0.93Å
C2	O2	doub	1.23Å	1.22Å
C2	N3	sing	1.38Å	1.36Å
N3	C4	doub	1.31Å	1.33Å
C4	N4	sing	1.38Å	1.34Å
C4	C5	sing	1.49Å	1.43Å
N4	C14	sing	1.40Å	1.44Å
N4	H4	sing	1.01Å	0.86Å
C5	O8	sing	1.38Å	1.37Å
O8	C9	sing	1.38Å	1.34Å
C9	C10	doub	1.40Å	1.39Å	Aromatic
C9	C14	sing	1.40Å	1.39Å	Aromatic
C10	C11	sing	1.39Å	1.38Å	Aromatic
C10	H10	sing	1.09Å	0.93Å
C11	C12	doub	1.39Å	1.40Å	Aromatic
C11	H11	sing	1.09Å	0.93Å
C12	C13	sing	1.40Å	1.39Å	Aromatic
C12	H12	sing	1.09Å	0.93Å
C13	C14	doub	1.40Å	1.41Å	Aromatic
C13	O15	sing	1.36Å	1.37Å
O15	C16	sing	1.43Å	1.55Å
C16	C17	sing	1.52Å	1.46Å
C16	H161	sing	1.09Å	0.97Å
C16	H162	sing	1.10Å	0.97Å
C17	N18	sing	1.48Å	1.44Å
C17	H171	sing	1.09Å	0.97Å
C17	H172	sing	1.09Å	0.97Å
N18	C19	sing	1.39Å	1.36Å
N18	H18	sing	1.01Å	0.86Å
C19	N20	sing	1.39Å	1.28Å
C19	N21	doub	1.39Å	1.37Å
N20	H201	sing	1.02Å	0.86Å
N20	H202	sing	1.02Å	0.86Å
N21	H211	sing	1.02Å	0.86Å
N21	H212	sing	1.02Å	0.86Å
C2'	C1'	sing	1.52Å	1.36Å
C2'	C3'	sing	1.51Å	1.50Å
C2'	H2'1	sing	1.10Å	0.97Å
C2'	H2'2	sing	1.09Å	0.97Å
C5'	C4'	sing	1.52Å	1.53Å
C5'	H5'1	sing	1.09Å	0.97Å
C5'	H5'2	sing	1.09Å	0.97Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.09Å	0.98Å
O4'	C1'	sing	1.43Å	1.56Å
C1'	H1'	sing	1.10Å	0.98Å
C3'	O3'	sing	1.43Å	1.46Å
C3'	H3'	sing	1.09Å	0.98Å
O3'	H3T	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	121.3°	115.3°
O1P	P	O5'	106.9°	115.0°
O1P	P	O3P	105.3°	115.0°
O2P	P	O5'	106.1°	103.8°
O2P	P	O3P	110.8°	103.3°
P	O2P	HOP2	121.3°	118.9°
O5'	P	O3P	105.5°	102.9°
P	O5'	C5'	120.4°	118.4°
P	O3P	HOP3	109.5°	118.9°
O5'	C5'	C4'	109.2°	108.8°
O5'	C5'	H5'1	109.9°	109.0°
O5'	C5'	H5'2	109.8°	109.0°
C6	N1	C2	120.7°	121.0°
C6	N1	C1'	124.2°	119.4°
N1	C6	C5	120.9°	121.8°
N1	C6	H6	119.6°	116.7°
C2	N1	C1'	115.1°	119.5°
N1	C2	O2	118.1°	121.7°
N1	C2	N3	119.8°	118.2°
N1	C1'	C2'	120.6°	112.8°
N1	C1'	O4'	100.0°	109.4°
N1	C1'	H1'	108.2°	107.8°
C5	C6	H6	119.5°	121.5°
C6	C5	C4	117.2°	116.2°
C6	C5	O8	119.5°	122.5°
O2	C2	N3	122.1°	120.2°
C2	N3	C4	119.4°	120.9°
N3	C4	N4	119.4°	120.8°
N3	C4	C5	122.1°	121.9°
N4	C4	C5	118.5°	117.4°
C4	N4	C14	119.3°	120.9°
C4	N4	H4	120.4°	120.9°
C4	C5	O8	123.3°	121.3°
C14	N4	H4	120.3°	118.3°
N4	C14	C9	118.6°	120.0°
N4	C14	C13	119.3°	121.1°
C5	O8	C9	116.5°	118.1°
O8	C9	C10	116.7°	116.8°
O8	C9	C14	123.6°	122.4°
C10	C9	C14	119.7°	120.8°
C9	C10	C11	118.5°	119.7°
C9	C10	H10	120.8°	120.5°
C9	C14	C13	122.1°	119.0°
C11	C10	H10	120.7°	119.8°
C10	C11	C12	122.0°	120.0°
C10	C11	H11	119.0°	120.0°
C12	C11	H11	119.1°	120.0°
C11	C12	C13	120.1°	120.2°
C11	C12	H12	119.9°	119.5°
C13	C12	H12	120.0°	120.2°
C12	C13	C14	117.6°	120.3°
C12	C13	O15	127.7°	119.0°
C14	C13	O15	114.7°	120.6°
C13	O15	C16	111.9°	117.0°
O15	C16	C17	109.8°	109.4°
O15	C16	H161	109.7°	107.9°
O15	C16	H162	109.7°	108.7°
C17	C16	H161	109.7°	110.0°
C17	C16	H162	109.7°	111.6°
C16	C17	N18	113.7°	109.6°
C16	C17	H171	108.8°	111.3°
C16	C17	H172	108.8°	110.4°
H161	C16	H162	108.2°	109.1°
N18	C17	H171	108.8°	108.2°
N18	C17	H172	108.8°	108.2°
C17	N18	C19	123.5°	121.7°
C17	N18	H18	118.2°	118.6°
H171	C17	H172	107.7°	109.1°
C19	N18	H18	118.3°	119.7°
N18	C19	N20	121.4°	122.3°
N18	C19	N21	119.5°	118.6°
N20	C19	N21	118.8°	119.2°
C19	N20	H201	120.0°	120.9°
C19	N20	H202	120.0°	121.9°
C19	N21	H211	120.0°	121.2°
C19	N21	H212	120.0°	121.2°
H201	N20	H202	120.1°	117.2°
H211	N21	H212	120.0°	117.6°
C1'	C2'	C3'	102.5°	102.4°
C1'	C2'	H2'1	111.3°	110.5°
C1'	C2'	H2'2	111.3°	111.7°
C2'	C1'	O4'	111.1°	107.4°
C2'	C1'	H1'	108.1°	111.4°
C3'	C2'	H2'1	111.2°	109.7°
C3'	C2'	H2'2	111.3°	114.1°
C2'	C3'	C4'	101.6°	103.1°
C2'	C3'	O3'	114.5°	109.7°
C2'	C3'	H3'	109.4°	113.2°
H2'1	C2'	H2'2	109.2°	108.3°
C4'	C5'	H5'1	109.8°	110.3°
C4'	C5'	H5'2	109.8°	110.3°
C5'	C4'	O4'	108.1°	107.9°
C5'	C4'	C3'	117.7°	112.9°
C5'	C4'	H4'	108.4°	109.5°
H5'1	C5'	H5'2	108.3°	109.4°
O4'	C4'	C3'	105.3°	106.2°
O4'	C4'	H4'	108.5°	107.9°
C4'	O4'	C1'	101.4°	109.3°
C3'	C4'	H4'	108.5°	112.1°
C4'	C3'	O3'	112.4°	109.9°
C4'	C3'	H3'	109.4°	113.4°
O4'	C1'	H1'	108.1°	108.0°
O3'	C3'	H3'	109.3°	107.4°
C3'	O3'	H3T	114.5°	107.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O5'	121.9°	126.6°
O1P	P	O2P	O3P	124.1°	126.3°
O1P	P	O5'	O3P	111.7°	125.8°
O1P	P	O2P	HOP2	180.0°	48.8°
O1P	P	O5'	C5'	41.8°	179.9°
O1P	P	O3P	HOP3	111.1°	48.0°
O2P	P	O5'	O3P	117.6°	107.4°
O2P	P	O5'	C5'	172.5°	53.1°
O2P	P	O3P	HOP3	21.6°	78.4°
O5'	P	O2P	HOP2	58.0°	175.4°
P	O5'	C5'	C4'	174.8°	180.0°
P	O5'	C5'	H5'1	54.3°	59.6°
P	O5'	C5'	H5'2	64.7°	59.6°
O5'	P	O3P	HOP3	136.1°	173.8°
O3P	P	O2P	HOP2	56.0°	77.5°
O3P	P	O5'	C5'	69.9°	54.3°
O5'	C5'	C4'	H5'1	120.5°	119.5°
O5'	C5'	C4'	H5'2	120.5°	119.5°
O5'	C5'	H5'1	H5'2	119.9°	119.0°
O5'	C5'	C4'	O4'	67.3°	62.5°
O5'	C5'	C4'	C3'	51.6°	179.5°
O5'	C5'	C4'	H4'	175.2°	54.7°
C6	N1	C2	C1'	177.1°	180.0°
N1	C6	C5	H6	180.0°	179.9°
C6	N1	C2	O2	178.7°	179.9°
C6	N1	C2	N3	1.6°	0.0°
N1	C6	C5	C4	0.2°	0.0°
N1	C6	C5	O8	178.9°	180.0°
C6	N1	C1'	C2'	91.6°	86.5°
C6	N1	C1'	O4'	30.3°	32.9°
C6	N1	C1'	H1'	143.3°	150.0°
C2	N1	C6	C5	1.0°	0.0°
C2	N1	C6	H6	179.0°	180.0°
N1	C2	O2	N3	179.6°	179.9°
N1	C2	N3	C4	1.3°	0.0°
C2	N1	C1'	C2'	85.4°	93.5°
C2	N1	C1'	O4'	152.7°	147.1°
C2	N1	C1'	H1'	39.7°	29.9°
C1'	N1	C6	C5	177.8°	180.0°
C1'	N1	C6	H6	2.2°	0.0°
C1'	N1	C2	O2	1.6°	0.1°
C1'	N1	C2	N3	178.7°	180.0°
N1	C1'	C2'	O4'	116.4°	120.5°
N1	C1'	C2'	H1'	125.1°	121.4°
N1	C1'	C2'	C3'	87.9°	147.4°
N1	C1'	C2'	H2'1	31.1°	30.6°
N1	C1'	C2'	H2'2	153.1°	90.0°
N1	C1'	O4'	C4'	124.6°	131.7°
N1	C1'	O4'	H1'	113.0°	117.0°
C6	C5	C4	N3	0.1°	0.0°
C6	C5	C4	N4	178.0°	180.0°
C6	C5	C4	O8	178.7°	179.9°
C6	C5	O8	C9	176.7°	180.0°
H6	C6	C5	C4	179.8°	180.0°
H6	C6	C5	O8	1.1°	0.1°
O2	C2	N3	C4	179.0°	179.9°
C2	N3	C4	N4	178.6°	180.0°
C2	N3	C4	C5	0.5°	0.0°
N3	C4	N4	C5	178.2°	180.0°
N3	C4	N4	C14	179.0°	180.0°
N3	C4	N4	H4	0.9°	0.1°
N3	C4	C5	O8	178.6°	180.0°
C4	N4	C14	H4	180.0°	179.8°
N4	C4	C5	O8	3.3°	0.1°
C4	N4	C14	C9	0.0°	0.0°
C4	N4	C14	C13	179.6°	179.9°
C5	C4	N4	C14	0.8°	0.0°
C5	C4	N4	H4	179.1°	179.8°
C4	C5	O8	C9	4.6°	0.1°
N4	C14	C9	O8	1.5°	0.0°
N4	C14	C9	C10	179.4°	180.0°
N4	C14	C9	C13	179.6°	180.0°
N4	C14	C13	C12	179.4°	180.0°
N4	C14	C13	O15	1.2°	0.0°
H4	N4	C14	C9	180.0°	179.8°
H4	N4	C14	C13	0.5°	0.2°
C5	O8	C9	C10	177.1°	180.0°
C5	O8	C9	C14	3.8°	0.1°
O8	C9	C10	C14	179.2°	179.9°
O8	C9	C10	C11	177.5°	179.9°
O8	C9	C10	H10	2.6°	0.0°
O8	C9	C14	C13	178.0°	179.9°
C9	C10	C11	H10	180.0°	180.0°
C9	C10	C11	C12	1.1°	0.0°
C9	C10	C11	H11	178.9°	180.0°
C10	C9	C14	C13	1.1°	0.0°
C14	C9	C10	C11	1.7°	0.0°
C14	C9	C10	H10	178.3°	179.9°
C9	C14	C13	C12	0.2°	0.0°
C9	C14	C13	O15	179.3°	180.0°
C10	C11	C12	H11	180.0°	180.0°
C10	C11	C12	C13	0.1°	0.0°
C10	C11	C12	H12	179.9°	180.0°
H10	C10	C11	C12	178.9°	180.0°
H10	C10	C11	H11	1.2°	0.1°
C11	C12	C13	H12	180.0°	179.9°
C11	C12	C13	C14	0.8°	0.0°
C11	C12	C13	O15	178.6°	180.0°
H11	C11	C12	C13	179.9°	180.0°
H11	C11	C12	H12	0.1°	0.1°
C12	C13	C14	O15	179.4°	180.0°
C12	C13	O15	C16	39.9°	30.1°
H12	C12	C13	C14	179.3°	180.0°
H12	C12	C13	O15	1.4°	0.1°
C14	C13	O15	C16	139.4°	150.0°
C13	O15	C16	C17	139.0°	150.3°
C13	O15	C16	H161	18.3°	90.0°
C13	O15	C16	H162	100.4°	28.1°
O15	C16	C17	H161	120.6°	118.4°
O15	C16	C17	H162	120.6°	120.4°
O15	C16	H161	H162	119.7°	118.0°
O15	C16	C17	N18	57.6°	61.5°
O15	C16	C17	H171	63.9°	58.1°
O15	C16	C17	H172	179.0°	179.4°
C17	C16	H161	H162	119.7°	122.7°
C16	C17	N18	H171	121.4°	121.6°
C16	C17	N18	H172	121.4°	120.4°
C16	C17	H171	H172	117.8°	122.0°
C16	C17	N18	C19	99.5°	180.0°
C16	C17	N18	H18	80.5°	0.0°
H161	C16	C17	N18	178.2°	179.9°
H161	C16	C17	H171	56.7°	60.3°
H161	C16	C17	H172	60.3°	61.0°
H162	C16	C17	N18	63.1°	58.8°
H162	C16	C17	H171	175.5°	178.5°
H162	C16	C17	H172	58.4°	60.2°
N18	C17	H171	H172	117.8°	117.4°
C17	N18	C19	H18	179.9°	180.0°
C17	N18	C19	N20	176.3°	179.9°
C17	N18	C19	N21	9.7°	0.0°
H171	C17	N18	C19	139.1°	58.5°
H171	C17	N18	H18	41.0°	121.5°
H172	C17	N18	C19	22.0°	59.5°
H172	C17	N18	H18	158.1°	120.5°
N18	C19	N20	N21	174.0°	180.0°
N18	C19	N20	H201	0.1°	179.9°
N18	C19	N20	H202	180.0°	0.2°
N18	C19	N21	H211	174.2°	0.0°
N18	C19	N21	H212	5.9°	180.0°
H18	N18	C19	N20	3.8°	0.1°
H18	N18	C19	N21	170.2°	180.0°
C19	N20	H201	H202	179.9°	179.8°
N20	C19	N21	H211	0.0°	180.0°
N20	C19	N21	H212	180.0°	0.0°
N21	C19	N20	H201	174.0°	0.0°
N21	C19	N20	H202	6.0°	179.8°
C19	N21	H211	H212	180.0°	180.0°
C1'	C2'	C3'	H2'1	119.0°	117.4°
C1'	C2'	C3'	H2'2	119.1°	120.9°
C1'	C2'	H2'1	H2'2	123.3°	122.7°
C2'	C1'	O4'	C4'	3.8°	9.0°
C1'	C2'	C3'	C4'	41.0°	33.4°
C2'	C1'	O4'	H1'	118.5°	120.3°
C1'	C2'	C3'	O3'	162.4°	83.7°
C1'	C2'	C3'	H3'	74.5°	156.4°
C3'	C2'	H2'1	H2'2	123.1°	125.1°
C2'	C3'	C4'	C5'	160.3°	88.8°
C2'	C3'	C4'	O4'	39.8°	29.2°
C2'	C3'	C4'	O3'	122.9°	116.9°
C2'	C3'	C4'	H3'	115.6°	122.8°
C2'	C3'	C4'	H4'	76.2°	146.9°
C3'	C2'	C1'	O4'	28.5°	26.9°
C3'	C2'	C1'	H1'	147.0°	91.2°
C2'	C3'	O3'	H3'	123.1°	123.4°
C2'	C3'	O3'	H3T	180.0°	126.6°
H2'1	C2'	C3'	C4'	160.0°	84.0°
H2'1	C2'	C1'	O4'	147.4°	90.0°
H2'1	C2'	C1'	H1'	94.0°	152.0°
H2'1	C2'	C3'	O3'	78.6°	158.9°
H2'1	C2'	C3'	H3'	44.5°	39.0°
H2'2	C2'	C3'	C4'	78.0°	154.3°
H2'2	C2'	C1'	O4'	90.5°	149.4°
H2'2	C2'	C1'	H1'	28.0°	31.3°
H2'2	C2'	C3'	O3'	43.4°	37.2°
H2'2	C2'	C3'	H3'	166.4°	82.7°
C4'	C5'	H5'1	H5'2	119.9°	121.6°
C5'	C4'	O4'	C3'	126.6°	121.3°
C5'	C4'	O4'	H4'	117.4°	118.2°
C5'	C4'	C3'	H4'	123.6°	124.3°
C5'	C4'	O4'	C1'	149.0°	108.6°
C5'	C4'	C3'	O3'	76.9°	154.2°
C5'	C4'	C3'	H3'	44.7°	34.0°
H5'1	C5'	C4'	O4'	53.2°	57.1°
H5'1	C5'	C4'	C3'	172.2°	60.0°
H5'1	C5'	C4'	H4'	64.2°	174.3°
H5'2	C5'	C4'	O4'	172.2°	178.1°
H5'2	C5'	C4'	C3'	68.8°	61.0°
H5'2	C5'	C4'	H4'	54.8°	64.8°
O4'	C4'	C3'	H4'	116.0°	117.6°
C4'	O4'	C1'	H1'	122.3°	111.3°
O4'	C4'	C3'	O3'	162.7°	87.7°
O4'	C4'	C3'	H3'	75.8°	152.1°
C3'	C4'	O4'	C1'	22.4°	12.8°
C4'	C3'	O3'	H3'	121.6°	123.8°
C4'	C3'	O3'	H3T	64.8°	120.7°
H4'	C4'	O4'	C1'	93.6°	133.2°
H4'	C4'	C3'	O3'	46.7°	29.9°
H4'	C4'	C3'	H3'	168.3°	90.3°
H3'	C3'	O3'	H3T	56.9°	3.2°

Definition date:	2001-12-07
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1KGK