Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

GBO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
P1O2sing1.61Å1.61Å
O2HO2sing0.97Å0.95Å
O1P1doub1.48Å1.48Å
O3P1sing1.61Å1.59Å
P1O8sing1.61Å1.59Å
O8HO8sing0.97Å0.95Å
P2O3sing1.61Å1.62Å
O9P2doub1.48Å1.50Å
O5P2sing1.61Å1.58Å
P2O4sing1.61Å1.46Å
O4HO4sing0.97Å0.95Å
C1O5sing1.43Å1.40Å
C1C2sing1.51Å1.39Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C3C2doub1.31Å1.37Å
C2H2sing1.08Å1.08Å
C4C3sing1.51Å1.55Å
C3C5sing1.51Å1.52Å
C4H4sing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
C4H4Bsing1.09Å1.10Å
C5C6sing1.53Å1.52Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C7C6sing1.51Å1.39Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C7C8doub1.31Å1.38Å
C7H7sing1.08Å1.08Å
C10C8sing1.51Å1.54Å
C8C9sing1.51Å1.53Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C9H9Bsing1.09Å1.10Å
N1C10sing1.46Å1.45Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11N1sing1.35Å1.32Å
N1HN1sing0.97Å1.00Å
C12C11sing1.51Å1.56Å
O6C11doub1.21Å1.23Å
C12C13sing1.53Å1.57Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C14C13sing1.53Å1.53Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C14C15sing1.53Å1.53Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C16C15sing1.53Å1.56Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
S1C16sing1.84Å1.86Å
C19C16sing1.54Å1.57Å
C16H16sing1.09Å1.10Å
C17S1sing1.84Å1.83Å
C18C17sing1.54Å1.56Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
N3C18sing1.47Å1.47Å
C18C19sing1.54Å1.57Å
C18H18sing1.09Å1.10Å
N2C19sing1.47Å1.49Å
C19H19sing1.09Å1.10Å
C20N2sing1.34Å1.33Å
N2HN2sing0.97Å1.00Å
O7C20doub1.22Å1.23Å
C20N3sing1.34Å1.34Å
N3HN3sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
P1O2HO2109.5°114.0°
O2P1O1112.9°109.4°
O2P1O3105.7°109.5°
O2P1O8100.7°109.5°
O1P1O3113.1°109.5°
O1P1O8117.5°109.5°
O3P1O8105.6°109.5°
P1O3P2125.9°134.0°
P1O8HO8109.5°114.0°
O3P2O9116.1°109.5°
O3P2O594.1°109.4°
O3P2O4103.0°109.5°
O9P2O5113.4°109.4°
O9P2O4118.9°109.5°
O5P2O4108.3°109.5°
P2O5C1127.0°123.0°
P2O4HO4109.5°114.0°
O5C1C2108.1°109.5°
O5C1H1109.9°109.4°
O5C1H1A110.2°109.4°
C2C1H1109.9°109.5°
C2C1H1A110.2°109.5°
C1C2C3121.0°120.0°
C1C2H2119.5°120.0°
H1C1H1A108.4°109.5°
C3C2H2119.5°120.0°
C2C3C4118.7°120.0°
C2C3C5123.8°120.0°
C4C3C5117.5°120.0°
C3C4H4109.5°109.5°
C3C4H4A109.5°109.5°
C3C4H4B109.5°109.5°
C3C5C6116.1°109.5°
C3C5H5107.3°109.5°
C3C5H5A105.8°109.4°
H4C4H4A109.4°109.5°
H4C4H4B109.5°109.4°
H4AC4H4B109.5°109.4°
C6C5H5107.3°109.5°
C6C5H5A105.8°109.5°
C5C6C7108.0°109.5°
C5C6H6110.0°109.5°
C5C6H6A110.3°109.5°
H5C5H5A114.8°109.5°
C7C6H6110.0°109.5°
C7C6H6A110.3°109.5°
C6C7C8127.6°120.0°
C6C7H7116.2°120.0°
H6C6H6A108.3°109.4°
C8C7H7116.2°120.0°
C7C8C10121.5°120.0°
C7C8C9118.0°120.0°
C10C8C9120.4°120.0°
C8C10N1100.0°109.5°
C8C10H10112.7°109.4°
C8C10H10A114.7°109.5°
C8C9H9109.5°109.5°
C8C9H9A109.5°109.5°
C8C9H9B109.5°109.5°
H9C9H9A109.4°109.5°
H9C9H9B109.5°109.5°
H9AC9H9B109.5°109.5°
N1C10H10112.8°109.5°
N1C10H10A114.7°109.5°
C10N1C11130.5°120.0°
C10N1HN1114.7°120.0°
H10C10H10A102.5°109.5°
C11N1HN1114.7°120.0°
N1C11C12112.6°120.0°
N1C11O6127.1°120.0°
C12C11O6120.3°120.0°
C11C12C13117.0°109.5°
C11C12H12107.0°109.5°
C11C12H12A105.3°109.5°
C13C12H12107.1°109.5°
C13C12H12A105.3°109.5°
C12C13C14110.0°109.4°
C12C13H13109.3°109.5°
C12C13H13A109.2°109.5°
H12C12H12A115.5°109.5°
C14C13H13109.3°109.4°
C14C13H13A109.2°109.5°
C13C14C15112.5°109.5°
C13C14H14108.5°109.5°
C13C14H14A107.8°109.5°
H13C13H13A109.9°109.6°
C15C14H14108.5°109.4°
C15C14H14A107.8°109.5°
C14C15C16110.1°109.5°
C14C15H15109.3°109.5°
C14C15H15A109.2°109.5°
H14C14H14A111.9°109.5°
C16C15H15109.3°109.5°
C16C15H15A109.1°109.5°
C15C16S1117.0°110.8°
C15C16C19113.4°110.8°
C15C16H1699.1°110.7°
H15C15H15A109.9°109.4°
S1C16C19102.0°102.8°
S1C16H16111.1°110.8°
C16S1C1792.7°94.8°
C19C16H16114.9°110.7°
C16C19C18109.5°112.2°
C16C19N2109.9°109.0°
C16C19H19107.4°110.6°
S1C17C18103.4°102.7°
S1C17H17111.6°110.8°
S1C17H17A112.8°110.8°
C18C17H17111.5°110.7°
C18C17H17A112.8°110.9°
C17C18N3105.7°109.2°
C17C18C19111.5°112.4°
C17C18H18108.3°110.3°
H17C17H17A104.9°110.6°
N3C18C19101.5°104.1°
N3C18H18117.4°110.5°
C18N3C20112.7°108.9°
C18N3HN3123.7°125.7°
C19C18H18112.2°110.1°
C18C19N2103.4°104.0°
C18C19H19113.5°110.3°
N2C19H19113.1°110.5°
C19N2C20110.5°109.0°
C19N2HN2124.8°125.5°
C20N2HN2124.8°125.5°
N2C20O7123.9°123.0°
N2C20N3112.0°114.0°
O7C20N3124.1°123.0°
C20N3HN3123.7°125.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2P1O1O3120.0°120.0°
O2P1O1O8116.5°120.0°
O2P1O3O8106.2°120.0°
O2P1O8HO821.1°60.0°
O2P1O3P2148.8°75.0°
HO2O2P1O16.3°180.0°
HO2O2P1O3117.7°60.0°
HO2O2P1O8132.5°60.0°
O1P1O3O8129.8°120.0°
O1P1O8HO8144.1°59.9°
O1P1O3P224.8°45.0°
O3P1O8HO888.7°179.9°
P1O3P2O951.4°45.0°
P1O3P2O567.2°165.0°
P1O3P2O4177.0°75.1°
O8P1O3P2105.0°165.0°
O3P2O9O5107.4°120.0°
O3P2O9O4123.7°120.0°
O3P2O5O4105.1°120.0°
O3P2O4HO4172.4°60.0°
O3P2O5C1159.5°175.0°
O9P2O5O4134.2°120.0°
O9P2O4HO457.6°179.9°
O9P2O5C138.7°55.0°
O5P2O4HO473.6°59.9°
P2O5C1C2176.2°180.0°
P2O5C1H163.7°59.9°
P2O5C1H1A55.7°60.0°
O4P2O5C195.4°65.0°
O5C1C2H1120.0°120.0°
O5C1C2H1A120.6°120.0°
O5C1H1H1A120.5°119.9°
O5C1C2C3171.4°135.1°
O5C1C2H28.7°44.9°
C2C1H1H1A120.5°120.1°
C1C2C3H2180.0°180.0°
C1C2C3C40.8°5.6°
C1C2C3C5179.8°174.4°
H1C1C2C351.4°104.9°
H1C1C2H2128.7°75.0°
H1AC1C2C368.1°15.1°
H1AC1C2H2111.9°164.9°
C2C3C4C5179.4°180.0°
C2C3C4H420.4°84.8°
C2C3C4H4A99.6°155.1°
C2C3C4H4B140.4°35.2°
C2C3C5C633.6°95.0°
C2C3C5H5153.6°145.0°
C2C3C5H5A83.4°25.0°
H2C2C3C4179.2°174.4°
H2C2C3C50.2°5.6°
C3C4H4H4A120.0°120.0°
C3C4H4H4B120.0°120.0°
C3C4H4AH4B120.0°120.0°
C4C3C5C6147.0°85.0°
C4C3C5H527.0°35.0°
C4C3C5H5A96.0°155.0°
C5C3C4H4160.2°95.2°
C5C3C4H4A79.9°24.8°
C5C3C4H4B40.2°144.8°
C3C5C6H5120.0°120.0°
C3C5C6H5A117.0°120.0°
C3C5H5H5A117.3°119.9°
C3C5C6C7159.4°180.0°
C3C5C6H680.7°60.0°
C3C5C6H6A38.8°60.0°
H4C4H4AH4B120.0°120.0°
C6C5H5H5A117.3°120.0°
C5C6C7H6120.0°120.0°
C5C6C7H6A120.6°120.0°
C5C6H6H6A120.6°120.0°
C5C6C7C8175.5°120.8°
C5C6C7H74.5°59.2°
H5C5C6C739.4°60.0°
H5C5C6H6159.4°180.0°
H5C5C6H6A81.2°60.0°
H5AC5C6C783.6°60.0°
H5AC5C6H636.3°60.0°
H5AC5C6H6A155.8°180.0°
C7C6H6H6A120.6°120.0°
C6C7C8H7180.0°180.0°
C6C7C8C10178.2°174.2°
C6C7C8C91.7°5.9°
H6C6C7C864.5°0.8°
H6C6C7H7115.5°179.2°
H6AC6C7C854.9°119.2°
H6AC6C7H7125.1°60.8°
C7C8C10C9176.5°179.9°
C7C8C9H9135.5°86.5°
C7C8C9H9A15.5°153.5°
C7C8C9H9B104.5°33.5°
C7C8C10N1106.0°95.0°
C7C8C10H1014.0°145.1°
C7C8C10H10A130.8°25.1°
H7C7C8C101.8°5.8°
H7C7C8C9178.3°174.2°
C10C8C9H947.9°93.6°
C10C8C9H9A167.9°26.4°
C10C8C9H9B72.1°146.4°
C8C10N1H10120.0°119.9°
C8C10N1H10A123.2°120.0°
C8C10H10H10A123.8°120.0°
C8C10N1C11168.1°180.0°
C8C10N1HN112.0°0.0°
C8C9H9H9A120.0°120.0°
C8C9H9H9B120.0°120.0°
C8C9H9AH9B120.0°120.0°
C9C8C10N170.5°85.0°
C9C8C10H10169.5°35.0°
C9C8C10H10A52.7°155.0°
H9C9H9AH9B120.0°120.0°
N1C10H10H10A123.8°120.1°
C10N1C11HN1180.0°180.0°
C10N1C11C12179.5°180.0°
C10N1C11O61.7°0.0°
H10C10N1C1172.0°60.0°
H10C10N1HN1108.0°119.9°
H10AC10N1C1144.8°60.0°
H10AC10N1HN1135.2°120.0°
N1C11C12O6178.0°179.9°
N1C11C12C1354.8°180.0°
N1C11C12H1265.2°60.0°
N1C11C12H12A171.4°60.0°
HN1N1C11C120.4°0.1°
HN1N1C11O6178.3°180.0°
C11C12C13H12120.0°120.0°
C11C12C13H12A116.5°120.0°
C11C12H12H12A116.9°120.0°
C11C12C13C14168.5°179.9°
C11C12C13H1371.5°60.0°
C11C12C13H13A48.7°60.1°
O6C11C12C13127.2°0.0°
O6C11C12H12112.8°120.0°
O6C11C12H12A10.6°120.0°
C13C12H12H12A116.9°120.0°
C12C13C14H13120.0°119.9°
C12C13C14H13A119.8°120.0°
C12C13H13H13A119.8°120.1°
C12C13C14C15135.3°180.0°
C12C13C14H1415.3°60.0°
C12C13C14H14A106.0°60.0°
H12C12C13C1448.5°60.0°
H12C12C13H13168.5°179.9°
H12C12C13H13A71.2°60.0°
H12AC12C13C1475.0°60.0°
H12AC12C13H1345.0°59.9°
H12AC12C13H13A165.3°179.9°
C14C13H13H13A119.8°120.0°
C13C14C15H14120.0°120.0°
C13C14C15H14A118.7°120.1°
C13C14H14H14A118.7°120.0°
C13C14C15C16176.0°180.0°
C13C14C15H1556.0°60.0°
C13C14C15H15A64.3°59.9°
H13C13C14C15104.7°60.1°
H13C13C14H14135.3°180.0°
H13C13C14H14A14.0°59.9°
H13AC13C14C1515.5°60.0°
H13AC13C14H14104.5°60.0°
H13AC13C14H14A134.2°180.0°
C15C14H14H14A118.8°120.0°
C14C15C16H15120.0°120.0°
C14C15C16H15A119.8°120.0°
C14C15H15H15A119.8°120.0°
C14C15C16S16.6°69.0°
C14C15C16C19124.8°177.6°
C14C15C16H16112.9°54.3°
H14C14C15C1664.0°60.0°
H14C14C15H15176.0°180.0°
H14C14C15H15A55.7°60.0°
H14AC14C15C1657.3°60.0°
H14AC14C15H1562.7°60.0°
H14AC14C15H15A177.0°180.0°
C16C15H15H15A119.7°120.0°
C15C16S1C19124.2°118.4°
C15C16S1H16112.8°123.3°
C15C16C19H16113.1°123.2°
C15C16S1C17166.3°153.0°
C15C16C19C18158.9°142.8°
C15C16C19N246.0°28.1°
C15C16C19H1977.4°93.7°
H15C15C16S1126.6°171.0°
H15C15C16C19115.2°57.5°
H15C15C16H167.1°65.7°
H15AC15C16S1113.2°51.0°
H15AC15C16C195.1°62.4°
H15AC15C16H16127.4°174.3°
S1C16C19H16120.3°118.4°
C16S1C17C1839.4°34.7°
C16S1C17H17159.4°153.0°
C16S1C17H17A82.8°83.8°
S1C16C19C1832.3°24.4°
S1C16C19N280.6°90.3°
S1C16C19H19156.0°147.9°
C19C16S1C1742.1°34.6°
C16C19C18C175.1°0.3°
C16C19C18N3117.3°117.8°
C16C19C18N2117.0°117.7°
C16C19C18H19120.0°123.7°
C16C19C18H18116.6°123.7°
C16C19N2H19120.0°121.7°
C16C19N2C20115.9°119.9°
C16C19N2HN264.1°60.1°
H16C16S1C1780.8°83.8°
H16C16C19C1888.0°94.0°
H16C16C19N2159.1°151.3°
H16C16C19H1935.7°29.6°
S1C17C18H17120.0°118.3°
S1C17C18H17A122.2°118.4°
S1C17H17H17A122.5°123.3°
S1C17C18N384.3°90.3°
S1C17C18C1925.2°24.8°
S1C17C18H18149.1°148.1°
C18C17H17H17A122.4°123.4°
C17C18N3C19116.5°120.3°
C17C18N3H18120.9°121.5°
C17C18C19H18121.7°123.4°
C17C18C19N2111.9°118.0°
C17C18C19H19125.2°123.4°
C17C18N3C20115.1°120.1°
C17C18N3HN364.9°59.7°
H17C17C18N335.7°28.1°
H17C17C18C19145.2°143.1°
H17C17C18H1890.9°93.6°
H17AC17C18N3153.5°151.3°
H17AC17C18C1997.0°93.6°
H17AC17C18H1826.9°29.7°
N3C18C19H18126.1°118.5°
N3C18C19N20.2°0.1°
N3C18C19H19122.7°118.4°
C18N3C20N22.0°0.2°
C18N3C20O7178.6°179.9°
C18N3C20HN3180.0°179.8°
C18C19N2H19123.2°118.3°
C18C19N2C200.9°0.0°
C18C19N2HN2179.1°180.0°
C19C18N3C201.3°0.2°
C19C18N3HN3178.7°180.0°
H18C18C19N2126.4°118.6°
H18C18C19H193.5°0.1°
H18C18N3C20123.9°118.4°
H18C18N3HN356.0°61.8°
C19N2C20HN2180.0°180.0°
C19N2C20O7178.8°180.0°
C19N2C20N31.8°0.1°
H19C19N2C20124.1°118.3°
H19C19N2HN255.9°61.6°
N2C20O7N3179.4°179.9°
N2C20N3HN3178.0°180.0°
HN2N2C20O71.2°0.0°
HN2N2C20N3178.2°179.9°
O7C20N3HN31.5°0.1°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon