GBJ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C20 | C2 | sing | 1.53Å | 1.49Å | |
C1 | C2 | sing | 1.53Å | 1.50Å | |
C2 | C3 | sing | 1.51Å | 1.49Å | |
C2 | O4 | sing | 1.43Å | 1.37Å | |
C3 | C4 | doub | 1.33Å | 1.50Å | |
O4 | C6 | sing | 1.36Å | 1.40Å | |
C6 | C7 | sing | 1.38Å | 1.45Å | Aromatic |
C6 | C5 | doub | 1.40Å | 1.41Å | Aromatic |
C4 | C5 | sing | 1.48Å | 1.53Å | |
C7 | C8 | doub | 1.38Å | 1.41Å | Aromatic |
C5 | C10 | sing | 1.40Å | 1.46Å | Aromatic |
C8 | C9 | sing | 1.39Å | 1.44Å | Aromatic |
C10 | C9 | doub | 1.38Å | 1.41Å | Aromatic |
C10 | O1 | sing | 1.36Å | 1.41Å | |
C9 | C13 | sing | 1.51Å | 1.52Å | |
O1 | C11 | sing | 1.43Å | 1.37Å | |
C11 | C12 | sing | 1.53Å | 1.49Å | |
C13 | C12 | sing | 1.53Å | 1.49Å | |
C12 | C14 | sing | 1.51Å | 1.51Å | |
C14 | C15 | sing | 1.38Å | 1.39Å | Aromatic |
C14 | C19 | doub | 1.39Å | 1.39Å | Aromatic |
O2 | C19 | sing | 1.36Å | 1.38Å | |
C15 | C16 | doub | 1.38Å | 1.39Å | Aromatic |
C19 | C18 | sing | 1.39Å | 1.39Å | Aromatic |
C16 | C17 | sing | 1.39Å | 1.39Å | Aromatic |
C18 | C17 | doub | 1.39Å | 1.39Å | Aromatic |
C17 | O3 | sing | 1.36Å | 1.38Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C1 | H2 | sing | 1.09Å | 1.10Å | |
C1 | H3 | sing | 1.09Å | 1.10Å | |
C3 | H4 | sing | 1.08Å | 1.08Å | |
C4 | H6 | sing | 1.08Å | 1.08Å | |
C7 | H8 | sing | 1.08Å | 1.08Å | |
C8 | H9 | sing | 1.08Å | 1.08Å | |
C11 | H10 | sing | 1.09Å | 1.10Å | |
C11 | H11 | sing | 1.09Å | 1.10Å | |
C12 | H12 | sing | 1.09Å | 1.10Å | |
C13 | H13 | sing | 1.09Å | 1.10Å | |
C13 | H14 | sing | 1.09Å | 1.10Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C16 | H16 | sing | 1.08Å | 1.08Å | |
C18 | H17 | sing | 1.08Å | 1.08Å | |
O2 | H18 | sing | 0.97Å | 0.95Å | |
O3 | H19 | sing | 0.97Å | 0.95Å | |
C20 | H20 | sing | 1.09Å | 1.10Å | |
C20 | H21 | sing | 1.09Å | 1.10Å | |
C20 | H22 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C20 | C2 | C1 | 106.0° | 109.2° |
C20 | C2 | C3 | 106.0° | 109.2° |
C20 | C2 | O4 | 106.0° | 109.2° |
C2 | C20 | H20 | 109.5° | 109.5° |
C2 | C20 | H21 | 109.5° | 109.5° |
C2 | C20 | H22 | 109.5° | 109.5° |
C1 | C2 | C3 | 111.2° | 109.3° |
C1 | C2 | O4 | 110.6° | 109.3° |
C2 | C1 | H1 | 109.5° | 109.4° |
C2 | C1 | H2 | 109.5° | 109.5° |
C2 | C1 | H3 | 109.4° | 109.5° |
C3 | C2 | O4 | 116.3° | 110.6° |
C2 | C3 | C4 | 117.0° | 120.0° |
C2 | C3 | H4 | 121.5° | 120.0° |
C2 | O4 | C6 | 120.6° | 117.1° |
C3 | C4 | C5 | 112.1° | 118.1° |
C4 | C3 | H4 | 121.5° | 120.0° |
C3 | C4 | H6 | 124.0° | 120.9° |
O4 | C6 | C7 | 118.0° | 121.4° |
O4 | C6 | C5 | 122.7° | 118.9° |
C7 | C6 | C5 | 119.3° | 119.7° |
C6 | C7 | C8 | 120.4° | 119.8° |
C6 | C7 | H8 | 119.8° | 120.1° |
C6 | C5 | C4 | 119.5° | 118.4° |
C6 | C5 | C10 | 120.7° | 120.3° |
C4 | C5 | C10 | 119.8° | 121.3° |
C5 | C4 | H6 | 123.9° | 121.0° |
C7 | C8 | C9 | 120.1° | 120.9° |
C8 | C7 | H8 | 119.8° | 120.1° |
C7 | C8 | H9 | 120.0° | 119.5° |
C5 | C10 | C9 | 119.2° | 119.3° |
C5 | C10 | O1 | 119.9° | 118.8° |
C8 | C9 | C10 | 120.4° | 120.0° |
C8 | C9 | C13 | 119.2° | 118.7° |
C9 | C8 | H9 | 120.0° | 119.6° |
C9 | C10 | O1 | 120.9° | 121.9° |
C10 | C9 | C13 | 120.5° | 121.3° |
C10 | O1 | C11 | 113.6° | 117.9° |
C9 | C13 | C12 | 110.4° | 109.8° |
C9 | C13 | H13 | 109.2° | 109.5° |
C9 | C13 | H14 | 109.2° | 109.4° |
O1 | C11 | C12 | 110.9° | 108.4° |
O1 | C11 | H10 | 109.1° | 109.7° |
O1 | C11 | H11 | 109.1° | 109.7° |
C11 | C12 | C13 | 110.9° | 108.3° |
C11 | C12 | C14 | 113.8° | 109.7° |
C12 | C11 | H10 | 109.1° | 109.7° |
C12 | C11 | H11 | 109.1° | 109.7° |
C11 | C12 | H12 | 107.9° | 109.7° |
C13 | C12 | C14 | 108.5° | 109.7° |
C13 | C12 | H12 | 107.8° | 109.7° |
C12 | C13 | H13 | 109.3° | 109.4° |
C12 | C13 | H14 | 109.2° | 109.5° |
C12 | C14 | C15 | 121.8° | 120.0° |
C12 | C14 | C19 | 118.6° | 120.0° |
C14 | C12 | H12 | 107.6° | 109.7° |
C15 | C14 | C19 | 119.6° | 120.0° |
C14 | C15 | C16 | 120.0° | 120.1° |
C14 | C15 | H15 | 120.0° | 119.9° |
C14 | C19 | O2 | 120.2° | 120.0° |
C14 | C19 | C18 | 120.2° | 120.0° |
O2 | C19 | C18 | 119.6° | 120.1° |
C19 | O2 | H18 | 109.5° | 114.0° |
C15 | C16 | C17 | 120.3° | 120.1° |
C16 | C15 | H15 | 120.0° | 120.0° |
C15 | C16 | H16 | 119.9° | 120.0° |
C19 | C18 | C17 | 120.0° | 119.9° |
C19 | C18 | H17 | 120.0° | 120.1° |
C16 | C17 | C18 | 119.9° | 119.9° |
C16 | C17 | O3 | 120.0° | 120.0° |
C17 | C16 | H16 | 119.8° | 119.9° |
C18 | C17 | O3 | 120.1° | 120.1° |
C17 | C18 | H17 | 120.0° | 120.0° |
C17 | O3 | H19 | 109.5° | 113.9° |
H1 | C1 | H2 | 109.5° | 109.5° |
H1 | C1 | H3 | 109.5° | 109.4° |
H2 | C1 | H3 | 109.4° | 109.5° |
H10 | C11 | H11 | 109.4° | 109.7° |
H13 | C13 | H14 | 109.5° | 109.3° |
H20 | C20 | H21 | 109.4° | 109.4° |
H20 | C20 | H22 | 109.5° | 109.4° |
H21 | C20 | H22 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C20 | C2 | C1 | C3 | 114.7° | 119.4° |
C20 | C2 | C1 | O4 | 114.4° | 119.4° |
C20 | C2 | C3 | O4 | 117.5° | 120.2° |
C20 | C2 | C3 | C4 | 158.7° | 89.1° |
C20 | C2 | O4 | C6 | 144.1° | 72.4° |
C20 | C2 | C1 | H1 | 180.0° | 179.4° |
C20 | C2 | C1 | H2 | 60.0° | 60.6° |
C20 | C2 | C1 | H3 | 60.0° | 59.5° |
C20 | C2 | C3 | H4 | 21.4° | 90.9° |
C2 | C20 | H20 | H21 | 120.0° | 120.0° |
C2 | C20 | H20 | H22 | 120.0° | 120.0° |
C2 | C20 | H21 | H22 | 120.0° | 120.1° |
C1 | C2 | C3 | O4 | 127.8° | 120.4° |
C1 | C2 | C3 | C4 | 86.6° | 151.4° |
C1 | C2 | O4 | C6 | 101.4° | 168.1° |
C2 | C1 | H1 | H2 | 120.0° | 120.0° |
C2 | C1 | H1 | H3 | 120.0° | 120.0° |
C2 | C1 | H2 | H3 | 119.9° | 120.0° |
C1 | C2 | C3 | H4 | 93.4° | 28.5° |
C1 | C2 | C20 | H20 | 180.0° | 60.0° |
C1 | C2 | C20 | H21 | 60.0° | 180.0° |
C1 | C2 | C20 | H22 | 60.0° | 60.0° |
C2 | C3 | C4 | H4 | 180.0° | 179.9° |
C3 | C2 | O4 | C6 | 26.7° | 47.8° |
C2 | C3 | C4 | C5 | 33.6° | 0.5° |
C3 | C2 | C1 | H1 | 65.3° | 60.0° |
C3 | C2 | C1 | H2 | 174.7° | 180.0° |
C3 | C2 | C1 | H3 | 54.7° | 59.9° |
C2 | C3 | C4 | H6 | 146.4° | 179.4° |
C3 | C2 | C20 | H20 | 61.8° | 179.5° |
C3 | C2 | C20 | H21 | 58.2° | 60.6° |
C3 | C2 | C20 | H22 | 178.2° | 59.5° |
O4 | C2 | C3 | C4 | 41.2° | 31.1° |
C2 | O4 | C6 | C7 | 173.9° | 146.4° |
C2 | O4 | C6 | C5 | 6.8° | 33.6° |
O4 | C2 | C1 | H1 | 65.6° | 61.2° |
O4 | C2 | C1 | H2 | 54.5° | 58.9° |
O4 | C2 | C1 | H3 | 174.4° | 178.9° |
O4 | C2 | C3 | H4 | 138.8° | 148.8° |
O4 | C2 | C20 | H20 | 62.4° | 59.5° |
O4 | C2 | C20 | H21 | 177.6° | 60.5° |
O4 | C2 | C20 | H22 | 57.6° | 179.5° |
C3 | C4 | C5 | C6 | 14.2° | 16.3° |
C3 | C4 | C5 | H6 | 180.0° | 180.0° |
C3 | C4 | C5 | C10 | 165.9° | 163.8° |
O4 | C6 | C7 | C5 | 179.4° | 180.0° |
O4 | C6 | C5 | C4 | 0.6° | 0.0° |
O4 | C6 | C7 | C8 | 179.6° | 180.0° |
O4 | C6 | C5 | C10 | 179.5° | 179.8° |
O4 | C6 | C7 | H8 | 0.4° | 0.0° |
C7 | C6 | C5 | C4 | 179.9° | 180.0° |
C6 | C7 | C8 | H8 | 180.0° | 179.9° |
C7 | C6 | C5 | C10 | 0.2° | 0.2° |
C6 | C7 | C8 | C9 | 0.2° | 0.1° |
C6 | C7 | C8 | H9 | 179.7° | 179.9° |
C6 | C5 | C4 | C10 | 179.9° | 179.9° |
C5 | C6 | C7 | C8 | 0.2° | 0.0° |
C6 | C5 | C10 | C9 | 0.1° | 0.3° |
C6 | C5 | C10 | O1 | 179.9° | 179.3° |
C6 | C5 | C4 | H6 | 165.8° | 163.7° |
C5 | C6 | C7 | H8 | 179.8° | 179.9° |
C4 | C5 | C10 | C9 | 179.9° | 179.9° |
C4 | C5 | C10 | O1 | 0.1° | 0.5° |
C5 | C4 | C3 | H4 | 146.4° | 179.4° |
C7 | C8 | C9 | H9 | 180.0° | 180.0° |
C7 | C8 | C9 | C10 | 0.2° | 0.0° |
C7 | C8 | C9 | C13 | 180.0° | 179.8° |
C5 | C10 | C9 | C8 | 0.1° | 0.2° |
C5 | C10 | C9 | O1 | 180.0° | 179.6° |
C5 | C10 | C9 | C13 | 179.9° | 179.7° |
C5 | C10 | O1 | C11 | 156.4° | 163.1° |
C10 | C5 | C4 | H6 | 14.1° | 16.2° |
C8 | C9 | C10 | C13 | 179.8° | 179.8° |
C8 | C9 | C10 | O1 | 179.9° | 179.4° |
C8 | C9 | C13 | C12 | 170.1° | 162.1° |
C9 | C8 | C7 | H8 | 179.8° | 180.0° |
C8 | C9 | C13 | H13 | 69.7° | 77.9° |
C8 | C9 | C13 | H14 | 50.0° | 41.9° |
C9 | C10 | O1 | C11 | 23.6° | 17.3° |
C10 | C9 | C13 | C12 | 9.6° | 18.1° |
C10 | C9 | C8 | H9 | 179.8° | 180.0° |
C10 | C9 | C13 | H13 | 110.5° | 101.9° |
C10 | C9 | C13 | H14 | 129.7° | 138.3° |
O1 | C10 | C9 | C13 | 0.1° | 0.8° |
C10 | O1 | C11 | C12 | 56.3° | 49.1° |
C10 | O1 | C11 | H10 | 176.5° | 168.8° |
C10 | O1 | C11 | H11 | 64.0° | 70.6° |
C9 | C13 | C12 | C11 | 40.3° | 48.3° |
C9 | C13 | C12 | H13 | 120.1° | 120.1° |
C9 | C13 | C12 | H14 | 120.1° | 120.1° |
C9 | C13 | C12 | C14 | 166.0° | 168.0° |
C13 | C9 | C8 | H9 | 0.0° | 0.2° |
C9 | C13 | C12 | H12 | 77.7° | 71.4° |
C9 | C13 | H13 | H14 | 119.6° | 119.9° |
O1 | C11 | C12 | H10 | 120.2° | 119.7° |
O1 | C11 | C12 | H11 | 120.2° | 119.7° |
O1 | C11 | C12 | C13 | 66.7° | 64.6° |
O1 | C11 | C12 | C14 | 170.5° | 175.7° |
O1 | C11 | H10 | H11 | 119.4° | 120.6° |
O1 | C11 | C12 | H12 | 51.2° | 55.1° |
C11 | C12 | C13 | C14 | 125.7° | 119.7° |
C11 | C12 | C13 | H12 | 118.0° | 119.6° |
C11 | C12 | C14 | H12 | 119.5° | 120.6° |
C11 | C12 | C14 | C15 | 65.1° | 60.0° |
C11 | C12 | C14 | C19 | 115.8° | 120.3° |
C12 | C11 | H10 | H11 | 119.3° | 120.5° |
C11 | C12 | C13 | H13 | 79.8° | 71.8° |
C11 | C12 | C13 | H14 | 160.4° | 168.4° |
C13 | C12 | C14 | H12 | 116.4° | 120.6° |
C13 | C12 | C14 | C15 | 58.9° | 58.8° |
C13 | C12 | C14 | C19 | 120.2° | 120.8° |
C13 | C12 | C11 | H10 | 173.0° | 175.7° |
C13 | C12 | C11 | H11 | 53.5° | 55.2° |
C12 | C13 | H13 | H14 | 119.6° | 119.9° |
C12 | C14 | C15 | C19 | 179.1° | 179.7° |
C12 | C14 | C19 | O2 | 0.6° | 0.0° |
C12 | C14 | C15 | C16 | 179.7° | 180.0° |
C12 | C14 | C19 | C18 | 179.6° | 179.7° |
C14 | C12 | C11 | H10 | 50.3° | 56.0° |
C14 | C12 | C11 | H11 | 69.2° | 64.6° |
C14 | C12 | C13 | H13 | 45.9° | 48.0° |
C14 | C12 | C13 | H14 | 73.9° | 71.8° |
C12 | C14 | C15 | H15 | 0.3° | 0.1° |
C15 | C14 | C19 | O2 | 179.7° | 179.7° |
C14 | C15 | C16 | H15 | 180.0° | 179.9° |
C15 | C14 | C19 | C18 | 0.5° | 0.6° |
C14 | C15 | C16 | C17 | 0.4° | 0.0° |
C15 | C14 | C12 | H12 | 175.3° | 179.4° |
C14 | C15 | C16 | H16 | 179.6° | 180.0° |
C14 | C19 | O2 | C18 | 179.8° | 179.7° |
C19 | C14 | C15 | C16 | 0.6° | 0.3° |
C14 | C19 | C18 | C17 | 0.2° | 0.6° |
C19 | C14 | C12 | H12 | 3.7° | 0.3° |
C19 | C14 | C15 | H15 | 179.4° | 179.8° |
C14 | C19 | C18 | H17 | 179.8° | 179.7° |
C14 | C19 | O2 | H18 | 180.0° | 90.0° |
O2 | C19 | C18 | C17 | 179.9° | 179.7° |
O2 | C19 | C18 | H17 | 0.1° | 0.0° |
C15 | C16 | C17 | H16 | 180.0° | 180.0° |
C15 | C16 | C17 | C18 | 0.0° | 0.0° |
C15 | C16 | C17 | O3 | 180.0° | 180.0° |
C19 | C18 | C17 | C16 | 0.1° | 0.3° |
C19 | C18 | C17 | H17 | 180.0° | 179.7° |
C19 | C18 | C17 | O3 | 179.9° | 179.8° |
C18 | C19 | O2 | H18 | 0.2° | 89.7° |
C16 | C17 | C18 | O3 | 180.0° | 180.0° |
C17 | C16 | C15 | H15 | 179.6° | 179.9° |
C16 | C17 | C18 | H17 | 179.9° | 180.0° |
C16 | C17 | O3 | H19 | 180.0° | 90.0° |
C18 | C17 | C16 | H16 | 179.9° | 180.0° |
C18 | C17 | O3 | H19 | 0.0° | 90.0° |
O3 | C17 | C16 | H16 | 0.0° | 0.0° |
O3 | C17 | C18 | H17 | 0.1° | 0.1° |
H1 | C1 | H2 | H3 | 120.0° | 120.0° |
H4 | C3 | C4 | H6 | 33.6° | 0.6° |
H8 | C7 | C8 | H9 | 0.3° | 0.0° |
H10 | C11 | C12 | H12 | 69.0° | 64.6° |
H11 | C11 | C12 | H12 | 171.5° | 174.8° |
H12 | C12 | C13 | H13 | 162.2° | 168.6° |
H12 | C12 | C13 | H14 | 42.4° | 48.8° |
H15 | C15 | C16 | H16 | 0.4° | 0.0° |
H20 | C20 | H21 | H22 | 120.0° | 119.9° |