GBA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N6 | C6 | sing | 1.38Å | 1.33Å | |
N1 | C6 | doub | 1.33Å | 1.34Å | Aromatic |
N1 | C2 | sing | 1.32Å | 1.40Å | Aromatic |
C6 | C5 | sing | 1.41Å | 1.34Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.40Å | Aromatic |
C5 | N7 | sing | 1.36Å | 1.33Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.35Å | Aromatic |
N7 | C8 | doub | 1.30Å | 1.32Å | Aromatic |
N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.33Å | Aromatic |
C8 | N9 | sing | 1.36Å | 1.33Å | Aromatic |
C8 | BR8 | sing | 1.89Å | 1.94Å | |
N9 | C1' | sing | 1.46Å | 1.50Å | |
O5' | C5' | sing | 1.43Å | 1.45Å | |
O4' | C1' | sing | 1.44Å | 1.44Å | |
O4' | C4' | sing | 1.44Å | 1.45Å | |
C1' | C2' | sing | 1.55Å | 1.55Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C4' | C3' | sing | 1.54Å | 1.54Å | |
C2' | C3' | sing | 1.55Å | 1.51Å | |
C2' | O2' | sing | 1.43Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
O2' | H1 | sing | 0.97Å | 0.95Å | |
C2' | H2 | sing | 1.09Å | 1.10Å | |
C3' | H3 | sing | 1.09Å | 1.10Å | |
O3' | H4 | sing | 0.97Å | 0.95Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C5' | H6 | sing | 1.09Å | 1.10Å | |
C5' | H7 | sing | 1.09Å | 1.10Å | |
O5' | H8 | sing | 0.97Å | 0.95Å | |
C1' | H9 | sing | 1.09Å | 1.10Å | |
C2 | H10 | sing | 1.08Å | 1.08Å | |
N6 | H11 | sing | 0.97Å | 1.00Å | |
N6 | H12 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N6 | C6 | N1 | 120.5° | 120.8° |
N6 | C6 | C5 | 117.7° | 120.8° |
C6 | N6 | H11 | 109.5° | 120.0° |
C6 | N6 | H12 | 109.5° | 120.0° |
C6 | N1 | C2 | 120.5° | 121.2° |
N1 | C6 | C5 | 121.7° | 118.5° |
N1 | C2 | N3 | 116.8° | 122.4° |
N1 | C2 | H10 | 121.6° | 118.8° |
C6 | C5 | N7 | 132.0° | 134.7° |
C6 | C5 | C4 | 119.8° | 118.2° |
C2 | N3 | C4 | 120.1° | 120.6° |
N3 | C2 | H10 | 121.6° | 118.8° |
N7 | C5 | C4 | 108.2° | 107.2° |
C5 | N7 | C8 | 107.1° | 109.4° |
C5 | C4 | N3 | 121.1° | 119.1° |
C5 | C4 | N9 | 108.0° | 106.0° |
N7 | C8 | N9 | 109.9° | 110.0° |
N7 | C8 | BR8 | 124.4° | 125.0° |
N3 | C4 | N9 | 130.9° | 134.9° |
C4 | N9 | C8 | 106.8° | 107.4° |
C4 | N9 | C1' | 123.7° | 126.3° |
N9 | C8 | BR8 | 125.7° | 125.0° |
C8 | N9 | C1' | 129.4° | 126.3° |
N9 | C1' | O4' | 111.6° | 110.6° |
N9 | C1' | C2' | 113.4° | 110.6° |
N9 | C1' | H9 | 108.8° | 110.7° |
O5' | C5' | C4' | 109.9° | 109.5° |
O5' | C5' | H6 | 109.4° | 109.5° |
O5' | C5' | H7 | 109.4° | 109.5° |
C5' | O5' | H8 | 109.5° | 113.9° |
C1' | O4' | C4' | 107.9° | 107.0° |
O4' | C1' | C2' | 105.0° | 103.5° |
O4' | C1' | H9 | 109.6° | 110.6° |
O4' | C4' | C5' | 107.7° | 110.0° |
O4' | C4' | C3' | 107.9° | 107.3° |
O4' | C4' | H5 | 110.3° | 109.9° |
C1' | C2' | C3' | 102.2° | 102.1° |
C1' | C2' | O2' | 111.6° | 110.9° |
C1' | C2' | H2 | 109.7° | 110.9° |
C2' | C1' | H9 | 108.2° | 110.6° |
C5' | C4' | C3' | 113.0° | 109.9° |
C5' | C4' | H5 | 109.0° | 109.8° |
C4' | C5' | H6 | 109.4° | 109.4° |
C4' | C5' | H7 | 109.4° | 109.5° |
C4' | C3' | C2' | 104.2° | 104.2° |
C4' | C3' | O3' | 109.0° | 110.5° |
C4' | C3' | H3 | 111.0° | 110.6° |
C3' | C4' | H5 | 109.0° | 109.9° |
C3' | C2' | O2' | 111.4° | 110.9° |
C2' | C3' | O3' | 108.2° | 110.5° |
C3' | C2' | H2 | 110.2° | 110.9° |
C2' | C3' | H3 | 111.5° | 110.5° |
C2' | O2' | H1 | 109.5° | 114.0° |
O2' | C2' | H2 | 111.3° | 110.8° |
O3' | C3' | H3 | 112.6° | 110.4° |
C3' | O3' | H4 | 109.5° | 114.0° |
H6 | C5' | H7 | 109.5° | 109.4° |
H11 | N6 | H12 | 109.4° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N6 | C6 | N1 | C5 | 175.9° | 179.9° |
N6 | C6 | N1 | C2 | 174.6° | 179.9° |
N6 | C6 | C5 | N7 | 4.1° | 0.1° |
N6 | C6 | C5 | C4 | 177.1° | 179.9° |
C6 | N6 | H11 | H12 | 120.0° | 179.9° |
C6 | N1 | C2 | N3 | 3.2° | 0.2° |
N1 | C6 | C5 | N7 | 179.9° | 180.0° |
N1 | C6 | C5 | C4 | 1.1° | 0.0° |
C6 | N1 | C2 | H10 | 176.8° | 179.9° |
N1 | C6 | N6 | H11 | 0.0° | 180.0° |
N1 | C6 | N6 | H12 | 120.0° | 0.1° |
C2 | N1 | C6 | C5 | 1.3° | 0.0° |
N1 | C2 | N3 | H10 | 180.0° | 179.8° |
N1 | C2 | N3 | C4 | 2.7° | 0.5° |
C6 | C5 | N7 | C4 | 178.9° | 180.0° |
C6 | C5 | N7 | C8 | 178.9° | 180.0° |
C6 | C5 | C4 | N3 | 1.5° | 0.3° |
C6 | C5 | C4 | N9 | 180.0° | 180.0° |
C5 | C6 | N6 | H11 | 176.1° | 0.1° |
C5 | C6 | N6 | H12 | 64.0° | 180.0° |
C2 | N3 | C4 | C5 | 0.5° | 0.5° |
C2 | N3 | C4 | N9 | 177.6° | 179.8° |
N7 | C5 | C4 | N3 | 179.4° | 179.8° |
N7 | C5 | C4 | N9 | 1.0° | 0.0° |
C5 | N7 | C8 | N9 | 0.9° | 0.0° |
C5 | N7 | C8 | BR8 | 177.8° | 180.0° |
C4 | C5 | N7 | C8 | 0.0° | 0.0° |
C5 | C4 | N3 | N9 | 178.0° | 179.7° |
C5 | C4 | N9 | C8 | 1.6° | 0.0° |
C5 | C4 | N9 | C1' | 178.6° | 180.0° |
N7 | C8 | N9 | C4 | 1.6° | 0.1° |
N7 | C8 | N9 | BR8 | 178.8° | 179.9° |
N7 | C8 | N9 | C1' | 178.6° | 180.0° |
N3 | C4 | N9 | C8 | 179.8° | 179.7° |
N3 | C4 | N9 | C1' | 0.4° | 0.2° |
C4 | N3 | C2 | H10 | 177.3° | 179.7° |
C4 | N9 | C8 | C1' | 179.8° | 179.9° |
C4 | N9 | C8 | BR8 | 177.2° | 180.0° |
C4 | N9 | C1' | O4' | 118.2° | 136.4° |
C4 | N9 | C1' | C2' | 123.4° | 109.5° |
C4 | N9 | C1' | H9 | 2.9° | 13.5° |
C8 | N9 | C1' | O4' | 61.7° | 43.5° |
C8 | N9 | C1' | C2' | 56.7° | 70.6° |
C8 | N9 | C1' | H9 | 177.2° | 166.5° |
BR8 | C8 | N9 | C1' | 2.6° | 0.1° |
N9 | C1' | O4' | C2' | 123.3° | 118.5° |
N9 | C1' | O4' | H9 | 120.6° | 123.0° |
N9 | C1' | O4' | C4' | 152.8° | 158.6° |
N9 | C1' | C2' | H9 | 120.9° | 123.0° |
N9 | C1' | C2' | C3' | 158.4° | 155.5° |
N9 | C1' | C2' | O2' | 82.5° | 86.3° |
N9 | C1' | C2' | H2 | 41.4° | 37.3° |
O5' | C5' | C4' | O4' | 51.8° | 67.1° |
O5' | C5' | C4' | H6 | 120.0° | 120.0° |
O5' | C5' | C4' | H7 | 120.1° | 120.0° |
O5' | C5' | C4' | C3' | 170.9° | 175.0° |
O5' | C5' | C4' | H5 | 67.8° | 54.0° |
O5' | C5' | H6 | H7 | 119.8° | 120.0° |
O4' | C1' | C2' | H9 | 117.0° | 118.5° |
C1' | O4' | C4' | C5' | 133.3° | 146.0° |
C1' | O4' | C4' | C3' | 11.0° | 26.6° |
O4' | C1' | C2' | C3' | 36.3° | 37.0° |
O4' | C1' | C2' | O2' | 155.4° | 155.2° |
O4' | C1' | C2' | H2 | 80.7° | 81.2° |
C1' | O4' | C4' | H5 | 107.9° | 92.9° |
C4' | O4' | C1' | C2' | 29.5° | 40.1° |
O4' | C4' | C5' | C3' | 119.1° | 117.9° |
O4' | C4' | C5' | H5 | 119.6° | 121.1° |
O4' | C4' | C3' | H5 | 119.7° | 119.5° |
O4' | C4' | C3' | C2' | 12.3° | 2.1° |
O4' | C4' | C3' | O3' | 103.0° | 120.7° |
O4' | C4' | C3' | H3 | 132.4° | 116.7° |
O4' | C4' | C5' | H6 | 68.2° | 172.9° |
O4' | C4' | C5' | H7 | 171.9° | 52.9° |
C4' | O4' | C1' | H9 | 86.6° | 78.4° |
C1' | C2' | C3' | C4' | 28.7° | 20.9° |
C1' | C2' | C3' | O2' | 119.3° | 118.2° |
C1' | C2' | C3' | H2 | 116.6° | 118.2° |
C1' | C2' | O2' | H2 | 123.0° | 123.6° |
C1' | C2' | C3' | O3' | 87.2° | 97.8° |
C1' | C2' | O2' | H1 | 180.0° | 174.2° |
C1' | C2' | C3' | H3 | 148.4° | 139.7° |
C5' | C4' | C3' | H5 | 121.3° | 121.0° |
C5' | C4' | C3' | C2' | 106.7° | 121.6° |
C5' | C4' | C3' | O3' | 138.1° | 119.7° |
C5' | C4' | C3' | H3 | 13.5° | 2.8° |
C4' | C5' | H6 | H7 | 119.8° | 120.0° |
C4' | C5' | O5' | H8 | 180.0° | 180.0° |
C4' | C3' | C2' | O3' | 115.9° | 118.7° |
C4' | C3' | C2' | H3 | 119.8° | 118.8° |
C4' | C3' | C2' | O2' | 148.0° | 139.1° |
C4' | C3' | O3' | H3 | 123.7° | 122.6° |
C4' | C3' | C2' | H2 | 88.0° | 97.3° |
C4' | C3' | O3' | H4 | 180.0° | 65.2° |
C3' | C4' | C5' | H6 | 50.8° | 55.0° |
C3' | C4' | C5' | H7 | 69.0° | 64.9° |
C3' | C2' | O2' | H2 | 123.5° | 123.7° |
C2' | C3' | O3' | H3 | 123.7° | 122.6° |
C3' | C2' | O2' | H1 | 66.5° | 61.5° |
C2' | C3' | O3' | H4 | 67.3° | 180.0° |
C2' | C3' | C4' | H5 | 132.0° | 117.4° |
C3' | C2' | C1' | H9 | 80.8° | 81.4° |
O2' | C2' | C3' | O3' | 32.1° | 20.4° |
O2' | C2' | C3' | H3 | 92.3° | 102.1° |
O2' | C2' | C1' | H9 | 38.4° | 36.8° |
O3' | C3' | C2' | H2 | 156.2° | 144.0° |
O3' | C3' | C4' | H5 | 16.7° | 1.3° |
H1 | O2' | C2' | H2 | 57.0° | 62.2° |
H2 | C2' | C3' | H3 | 31.8° | 21.5° |
H2 | C2' | C1' | H9 | 162.3° | 160.3° |
H3 | C3' | O3' | H4 | 56.3° | 57.4° |
H3 | C3' | C4' | H5 | 107.9° | 123.8° |
H5 | C4' | C5' | H6 | 172.2° | 66.0° |
H5 | C4' | C5' | H7 | 52.3° | 174.0° |
H6 | C5' | O5' | H8 | 59.9° | 60.0° |
H7 | C5' | O5' | H8 | 60.0° | 60.0° |