GAV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.22Å
C6	C5	sing	1.41Å	1.40Å
C5	C4	doub	1.40Å	1.39Å	Aromatic
C4	N3	sing	1.34Å	1.37Å
N3	C2	doub	1.31Å	1.38Å
C2	N2	sing	1.37Å	1.33Å
C6	N1	sing	1.35Å	1.38Å
C2	N1	sing	1.36Å	1.38Å
C5	N7	sing	1.36Å	1.36Å	Aromatic
N7	C8	doub	1.30Å	1.36Å	Aromatic
C4	N9	sing	1.37Å	1.39Å	Aromatic
C8	N9	sing	1.37Å	1.38Å	Aromatic
N9	C1'	sing	1.46Å	1.49Å
C1'	C2'	sing	1.55Å	1.53Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C3'	sing	1.55Å	1.52Å
C3'	O3'	sing	1.43Å	1.41Å
C1'	O4'	sing	1.44Å	1.41Å
C3'	C4'	sing	1.54Å	1.53Å
O4'	C4'	sing	1.44Å	1.42Å
C4'	C5'	sing	1.53Å	1.52Å
C5'	O5'	sing	1.43Å	1.42Å
O5'	PA	sing	1.61Å	1.62Å
PA	S1A	sing	2.12Å	1.71Å
PA	O2A	doub	1.48Å	1.52Å
PA	O3A	sing	1.61Å	1.62Å
O3A	PB	sing	1.61Å	1.61Å
PB	O1B	sing	1.61Å	1.51Å
PB	O2B	doub	1.48Å	1.51Å
PB	O3B	sing	1.61Å	1.62Å
O3B	PG	sing	1.61Å	1.62Å
PG	O1G	sing	1.61Å	1.52Å
PG	O3G	doub	1.48Å	1.50Å
PG	O2G	sing	1.61Å	1.51Å
N1	H1	sing	0.97Å	1.00Å
N2	H2N1	sing	0.97Å	1.00Å
N2	H2N2	sing	0.97Å	1.00Å
C8	H8	sing	1.08Å	1.08Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HA	sing	0.97Å	0.95Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HB	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
S1A	H1A	sing	1.34Å	1.30Å
O1B	H1B	sing	0.97Å	0.95Å
O1G	H1G	sing	0.97Å	0.95Å
O2G	H2G	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	C5	120.9°	120.8°
O6	C6	N1	117.5°	120.8°
C6	C5	C4	118.0°	118.6°
C5	C6	N1	121.6°	118.4°
C6	C5	N7	134.8°	134.1°
C5	C4	N3	120.2°	119.7°
C4	C5	N7	107.3°	107.3°
C5	C4	N9	107.8°	106.1°
C4	N3	C2	121.5°	121.2°
N3	C4	N9	132.0°	134.2°
N3	C2	N2	119.8°	119.1°
N3	C2	N1	119.6°	121.9°
N2	C2	N1	120.6°	119.0°
C2	N2	H2N1	120.0°	120.0°
C2	N2	H2N2	120.0°	120.0°
C6	N1	C2	119.2°	120.3°
C6	N1	H1	120.4°	119.8°
C2	N1	H1	120.4°	119.9°
C5	N7	C8	109.3°	109.3°
N7	C8	N9	108.1°	109.8°
N7	C8	H8	125.9°	125.1°
C4	N9	C8	107.4°	107.5°
C4	N9	C1'	122.2°	126.3°
C8	N9	C1'	130.3°	126.2°
N9	C8	H8	126.0°	125.1°
N9	C1'	C2'	113.4°	110.6°
N9	C1'	O4'	117.7°	110.7°
N9	C1'	H1'	106.6°	110.6°
C1'	C2'	O2'	110.7°	110.9°
C1'	C2'	C3'	102.6°	102.1°
C2'	C1'	O4'	104.8°	103.5°
C2'	C1'	H1'	106.1°	110.6°
C1'	C2'	H2'	109.3°	110.8°
O2'	C2'	C3'	113.4°	111.0°
O2'	C2'	H2'	111.0°	110.8°
C2'	O2'	HA	109.5°	114.0°
C2'	C3'	O3'	113.2°	110.5°
C2'	C3'	C4'	104.2°	104.2°
C3'	C2'	H2'	109.4°	111.0°
C2'	C3'	H3'	109.2°	110.5°
O3'	C3'	C4'	110.0°	110.5°
O3'	C3'	H3'	110.9°	110.5°
C3'	O3'	HB	109.5°	114.0°
C1'	O4'	C4'	105.6°	107.0°
O4'	C1'	H1'	107.5°	110.7°
C3'	C4'	O4'	106.5°	107.3°
C3'	C4'	C5'	114.2°	109.9°
C4'	C3'	H3'	109.1°	110.6°
C3'	C4'	H4'	108.3°	109.9°
O4'	C4'	C5'	109.6°	109.9°
O4'	C4'	H4'	109.7°	109.8°
C4'	C5'	O5'	113.6°	109.5°
C5'	C4'	H4'	108.4°	110.0°
C4'	C5'	H5'1	108.4°	109.5°
C4'	C5'	H5'2	108.4°	109.5°
C5'	O5'	PA	117.8°	123.0°
O5'	C5'	H5'1	108.5°	109.4°
O5'	C5'	H5'2	108.4°	109.5°
O5'	PA	S1A	107.6°	109.5°
O5'	PA	O2A	113.0°	109.5°
O5'	PA	O3A	104.3°	109.5°
S1A	PA	O2A	112.9°	109.5°
S1A	PA	O3A	104.8°	109.4°
PA	S1A	H1A	102.0°	103.0°
O2A	PA	O3A	113.6°	109.4°
PA	O3A	PB	127.4°	134.0°
O3A	PB	O1B	111.2°	109.5°
O3A	PB	O2B	106.2°	109.5°
O3A	PB	O3B	104.4°	109.5°
O1B	PB	O2B	111.1°	109.5°
O1B	PB	O3B	113.3°	109.5°
PB	O1B	H1B	109.5°	114.0°
O2B	PB	O3B	110.2°	109.4°
PB	O3B	PG	126.0°	134.0°
O3B	PG	O1G	108.9°	109.5°
O3B	PG	O3G	115.1°	109.5°
O3B	PG	O2G	107.8°	109.4°
O1G	PG	O3G	107.4°	109.5°
O1G	PG	O2G	113.3°	109.4°
PG	O1G	H1G	109.5°	114.0°
O3G	PG	O2G	104.5°	109.5°
PG	O2G	H2G	109.5°	114.0°
H2N1	N2	H2N2	120.0°	120.0°
H5'1	C5'	H5'2	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	C5	N1	179.4°	179.8°
O6	C6	C5	C4	179.8°	180.0°
O6	C6	N1	C2	179.7°	179.8°
O6	C6	C5	N7	0.5°	0.1°
O6	C6	N1	H1	0.3°	0.0°
C6	C5	C4	N7	179.7°	179.9°
C6	C5	C4	N3	0.2°	0.1°
C5	C6	N1	C2	0.9°	0.4°
C6	C5	N7	C8	179.8°	180.0°
C6	C5	C4	N9	179.3°	180.0°
C5	C6	N1	H1	179.1°	179.8°
C5	C4	N3	N9	179.4°	179.9°
C5	C4	N3	C2	0.5°	0.1°
C4	C5	C6	N1	0.4°	0.2°
C4	C5	N7	C8	0.1°	0.0°
C5	C4	N9	C8	0.8°	0.1°
C5	C4	N9	C1'	177.7°	180.0°
C4	N3	C2	N2	179.9°	180.0°
C4	N3	C2	N1	1.0°	0.1°
N3	C4	C5	N7	179.9°	180.0°
N3	C4	N9	C8	179.7°	180.0°
N3	C4	N9	C1'	2.9°	0.1°
N3	C2	N2	N1	179.0°	179.9°
N3	C2	N1	C6	1.2°	0.4°
C2	N3	C4	N9	178.9°	180.0°
N3	C2	N1	H1	178.8°	179.8°
N3	C2	N2	H2N1	0.0°	0.1°
N3	C2	N2	H2N2	180.0°	180.0°
N2	C2	N1	C6	179.8°	179.7°
N2	C2	N1	H1	0.2°	0.1°
C2	N2	H2N1	H2N2	180.0°	179.9°
C6	N1	C2	H1	180.0°	179.8°
N1	C6	C5	N7	179.9°	179.7°
N1	C2	N2	H2N1	179.1°	179.8°
N1	C2	N2	H2N2	0.9°	0.1°
N7	C5	C4	N9	0.4°	0.1°
C5	N7	C8	N9	0.7°	0.0°
C5	N7	C8	H8	179.3°	179.9°
N7	C8	N9	C4	0.9°	0.0°
N7	C8	N9	H8	180.0°	180.0°
N7	C8	N9	C1'	177.4°	180.0°
C4	N9	C8	C1'	176.5°	179.9°
C4	N9	C1'	C2'	138.0°	85.0°
C4	N9	C1'	O4'	99.3°	160.9°
C4	N9	C8	H8	179.1°	180.0°
C4	N9	C1'	H1'	21.5°	37.8°
C8	N9	C1'	C2'	38.1°	95.1°
C8	N9	C1'	O4'	84.7°	19.0°
C8	N9	C1'	H1'	154.5°	142.1°
N9	C1'	C2'	O4'	129.7°	118.6°
N9	C1'	C2'	H1'	116.7°	122.8°
N9	C1'	C2'	O2'	75.8°	86.2°
N9	C1'	C2'	C3'	162.9°	155.5°
N9	C1'	O4'	H1'	120.3°	123.0°
N9	C1'	O4'	C4'	169.0°	158.5°
C1'	N9	C8	H8	2.5°	0.1°
N9	C1'	C2'	H2'	46.9°	37.3°
C1'	C2'	O2'	C3'	114.7°	112.7°
C1'	C2'	O2'	H2'	121.6°	123.5°
C1'	C2'	C3'	H2'	116.0°	118.2°
C1'	C2'	C3'	O3'	106.8°	97.8°
C2'	C1'	O4'	H1'	112.6°	118.5°
C1'	C2'	C3'	C4'	12.7°	20.9°
C2'	C1'	O4'	C4'	41.9°	40.0°
C1'	C2'	O2'	HA	180.0°	180.0°
C1'	C2'	C3'	H3'	129.2°	139.7°
O2'	C2'	C3'	H2'	124.5°	123.6°
O2'	C2'	C3'	O3'	12.7°	20.4°
O2'	C2'	C1'	O4'	154.5°	155.2°
O2'	C2'	C3'	C4'	132.2°	139.1°
O2'	C2'	C1'	H1'	40.9°	36.6°
O2'	C2'	C3'	H3'	111.3°	102.1°
C2'	C3'	O3'	C4'	116.1°	114.8°
C2'	C3'	O3'	H3'	123.1°	122.5°
C3'	C2'	C1'	O4'	33.2°	37.0°
C2'	C3'	C4'	H3'	116.6°	118.7°
C2'	C3'	C4'	O4'	11.4°	2.0°
C2'	C3'	C4'	C5'	132.5°	121.4°
C3'	C2'	C1'	H1'	80.4°	81.6°
C3'	C2'	O2'	HA	65.2°	67.2°
C2'	C3'	O3'	HB	180.0°	61.5°
C2'	C3'	C4'	H4'	106.5°	117.4°
O3'	C3'	C4'	H3'	121.8°	122.6°
O3'	C3'	C4'	O4'	133.0°	120.6°
O3'	C3'	C4'	C5'	105.8°	119.9°
O3'	C3'	C2'	H2'	137.2°	144.0°
O3'	C3'	C4'	H4'	15.1°	1.3°
C1'	O4'	C4'	C3'	33.4°	26.5°
C1'	O4'	C4'	C5'	157.4°	145.9°
O4'	C1'	C2'	H2'	82.8°	81.2°
C1'	O4'	C4'	H4'	83.6°	92.9°
C3'	C4'	O4'	C5'	124.1°	119.5°
C3'	C4'	O4'	H4'	117.0°	119.4°
C3'	C4'	C5'	H4'	120.9°	121.1°
C3'	C4'	C5'	O5'	43.3°	174.9°
C4'	C3'	C2'	H2'	103.3°	97.3°
C4'	C3'	O3'	HB	63.9°	176.2°
C3'	C4'	C5'	H5'1	77.3°	55.0°
C3'	C4'	C5'	H5'2	163.9°	65.0°
O4'	C4'	C5'	H4'	119.7°	121.0°
O4'	C4'	C5'	O5'	162.7°	67.2°
C4'	O4'	C1'	H1'	70.7°	78.5°
O4'	C4'	C3'	H3'	105.2°	116.7°
O4'	C4'	C5'	H5'1	42.1°	172.9°
O4'	C4'	C5'	H5'2	76.7°	52.9°
C4'	C5'	O5'	H5'1	120.6°	120.0°
C4'	C5'	O5'	H5'2	120.6°	120.1°
C4'	C5'	O5'	PA	160.3°	180.0°
C5'	C4'	C3'	H3'	16.0°	2.7°
C4'	C5'	H5'1	H5'2	118.1°	120.0°
C5'	O5'	PA	S1A	74.5°	64.9°
C5'	O5'	PA	O2A	160.2°	55.1°
C5'	O5'	PA	O3A	36.4°	175.1°
O5'	C5'	C4'	H4'	77.5°	53.8°
O5'	C5'	H5'1	H5'2	118.2°	120.0°
O5'	PA	S1A	O2A	125.4°	120.1°
O5'	PA	S1A	O3A	110.6°	120.0°
O5'	PA	O2A	O3A	118.6°	120.0°
O5'	PA	O3A	PB	103.2°	180.0°
PA	O5'	C5'	H5'1	39.8°	60.0°
PA	O5'	C5'	H5'2	79.1°	59.9°
O5'	PA	S1A	H1A	125.4°	60.0°
S1A	PA	O2A	O3A	119.1°	120.0°
S1A	PA	O3A	PB	143.9°	60.0°
O2A	PA	O3A	PB	20.3°	60.0°
O2A	PA	S1A	H1A	0.0°	180.0°
PA	O3A	PB	O1B	42.4°	80.0°
PA	O3A	PB	O2B	163.4°	40.0°
PA	O3A	PB	O3B	80.1°	160.0°
O3A	PA	S1A	H1A	124.1°	60.0°
O3A	PB	O1B	O2B	118.1°	120.0°
O3A	PB	O1B	O3B	117.2°	120.0°
O3A	PB	O2B	O3B	112.5°	120.0°
O3A	PB	O3B	PG	140.3°	165.0°
O3A	PB	O1B	H1B	118.1°	60.0°
O1B	PB	O2B	O3B	126.4°	120.0°
O1B	PB	O3B	PG	98.6°	75.0°
O2B	PB	O3B	PG	26.6°	45.0°
O2B	PB	O1B	H1B	0.0°	179.9°
PB	O3B	PG	O1G	63.1°	75.1°
PB	O3B	PG	O3G	57.5°	45.0°
PB	O3B	PG	O2G	173.6°	165.0°
O3B	PB	O1B	H1B	124.7°	60.0°
O3B	PG	O1G	O3G	125.2°	120.0°
O3B	PG	O1G	O2G	119.9°	119.9°
O3B	PG	O3G	O2G	118.0°	120.0°
O3B	PG	O1G	H1G	125.2°	59.9°
O3B	PG	O2G	H2G	122.9°	180.0°
O1G	PG	O3G	O2G	120.7°	120.0°
O1G	PG	O2G	H2G	116.6°	60.0°
O3G	PG	O1G	H1G	0.0°	180.0°
O3G	PG	O2G	H2G	0.0°	60.0°
O2G	PG	O1G	H1G	114.9°	60.0°
H1'	C1'	C2'	H2'	163.6°	160.1°
H2'	C2'	O2'	HA	58.4°	56.5°
H2'	C2'	C3'	H3'	13.2°	21.5°
H3'	C3'	O3'	HB	56.9°	61.0°
H3'	C3'	C4'	H4'	136.9°	123.9°
H4'	C4'	C5'	H5'1	161.9°	66.1°
H4'	C4'	C5'	H5'2	43.1°	173.9°

Definition date:	2007-05-15
Last modified:	2012-02-17
Release status:	REL
Processing site:	RCSB